RNA–Protein interactions for RNA: ENST00000566009.5

SMPD3-206, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 4

Gene SMPD3, Length 586 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-206ENST00000566009 USP17L20D6RJB6 530 aa11.37□□□□□ -0.59
SMPD3-206ENST00000566009 GALR2O43603 387 aaPredicted RBP11.37□□□□□ -0.59
SMPD3-206ENST00000566009 LDHBP07195 334 aaKnown RBP11.37□□□□□ -0.59
SMPD3-206ENST00000566009 AKR1A1P14550 325 aa11.37□□□□□ -0.59
SMPD3-206ENST00000566009 TAL1P17542 331 aaPredicted RBP11.37□□□□□ -0.59
SMPD3-206ENST00000566009 JAG1P78504 1218 aa11.37□□□□□ -0.59
SMPD3-206ENST00000566009 USP17L24Q0WX57 530 aa11.37□□□□□ -0.59
SMPD3-206ENST00000566009 NBPF20Q3BBV1 942 aa11.37□□□□□ -0.59
SMPD3-206ENST00000566009 FRMD5Q7Z6J6 570 aa11.37□□□□□ -0.59
SMPD3-206ENST00000566009 SYNRGQ9UMZ2 1314 aa11.36□□□□□ -0.59
SMPD3-206ENST00000566009 MYADML2A6NDP7 307 aa11.36□□□□□ -0.59
SMPD3-206ENST00000566009 ASGR1P07306 291 aa11.36□□□□□ -0.59
SMPD3-206ENST00000566009 ASNSP08243 561 aa11.36□□□□□ -0.59
SMPD3-206ENST00000566009 ZNF865P0CJ78 1059 aaPredicted RBP11.36□□□□□ -0.59
SMPD3-206ENST00000566009 IRX5P78411 483 aaPredicted RBP11.36□□□□□ -0.59
SMPD3-206ENST00000566009 NEUROD2Q15784 382 aa11.36□□□□□ -0.59
SMPD3-206ENST00000566009 USP17L2Q6R6M4 530 aa11.36□□□□□ -0.59
SMPD3-206ENST00000566009 LBX2Q6XYB7 198 aa11.36□□□□□ -0.59
SMPD3-206ENST00000566009 SCLYQ96I15 445 aa11.36□□□□□ -0.59
SMPD3-206ENST00000566009 NOC4LQ9BVI4 516 aaKnown RBP11.36□□□□□ -0.59
SMPD3-206ENST00000566009 MOV10L1Q9BXT6 1211 aaKnown RBP11.36□□□□□ -0.59
SMPD3-206ENST00000566009 MYH16Q9H6N6 1097 aa11.36□□□□□ -0.59
SMPD3-206ENST00000566009 MROH5Q6ZUA9 1318 aa11.35□□□□□ -0.59
SMPD3-206ENST00000566009 LCHNA4D1U4 455 aa11.35□□□□□ -0.59
SMPD3-206ENST00000566009 CCDC30Q5VVM6 783 aa11.35□□□□□ -0.59
SMPD3-206ENST00000566009 CATSPERGQ6ZRH7 1159 aa11.35□□□□□ -0.59
SMPD3-206ENST00000566009 EP400NLQ6ZTU2 488 aa11.35□□□□□ -0.59
SMPD3-206ENST00000566009 PABPC5Q96DU9 382 aaKnown RBP11.35□□□□□ -0.59
SMPD3-206ENST00000566009 MBIPQ9NS73 344 aa11.35□□□□□ -0.59
SMPD3-206ENST00000566009 ROBO3Q96MS0 1386 aa11.35□□□□□ -0.59
SMPD3-206ENST00000566009 ZNF236Q9UL36 1845 aa11.35□□□□□ -0.59
SMPD3-206ENST00000566009 MAP1BP46821 2468 aaKnown RBP11.34□□□□□ -0.59
SMPD3-206ENST00000566009 PFKMP08237 780 aa11.34□□□□□ -0.59
SMPD3-206ENST00000566009 ERCC3P19447 782 aa11.34□□□□□ -0.59
SMPD3-206ENST00000566009 SIGLEC14Q08ET2 396 aa11.34□□□□□ -0.59
SMPD3-206ENST00000566009 SMAD2Q15796 467 aaKnown RBP11.34□□□□□ -0.59
SMPD3-206ENST00000566009 MCTP2Q6DN12 878 aa11.34□□□□□ -0.59
SMPD3-206ENST00000566009 PCSK9Q8NBP7 692 aaKnown RBP11.34□□□□□ -0.59
SMPD3-206ENST00000566009 ASIC4Q96FT7 647 aa11.34□□□□□ -0.59
SMPD3-206ENST00000566009 DLL3Q9NYJ7 618 aa11.34□□□□□ -0.59
SMPD3-206ENST00000566009 MTUS1Q9ULD2 1270 aa11.34□□□□□ -0.59
SMPD3-206ENST00000566009 TRIM35Q9UPQ4 493 aa11.34□□□□□ -0.59
SMPD3-206ENST00000566009 FASNP49327 2511 aaKnown RBP11.34□□□□□ -0.59
SMPD3-206ENST00000566009 PDE8BO95263 885 aa11.33□□□□□ -0.6
SMPD3-206ENST00000566009 ACTN1P12814 892 aa11.33□□□□□ -0.6
SMPD3-206ENST00000566009 CST5P28325 142 aaPredicted RBP11.33□□□□□ -0.6
SMPD3-206ENST00000566009 SHROOM1Q2M3G4 852 aaPredicted RBP11.33□□□□□ -0.6
SMPD3-206ENST00000566009 DEFB128Q7Z7B8 93 aa11.33□□□□□ -0.6
SMPD3-206ENST00000566009 ABRAQ8N0Z2 381 aa11.33□□□□□ -0.6
SMPD3-206ENST00000566009 CDCA7LQ96GN5 454 aa11.33□□□□□ -0.6
SMPD3-206ENST00000566009 C12orf42Q96LP6 360 aa11.33□□□□□ -0.6
SMPD3-206ENST00000566009 AGBL1Q96MI9 1066 aa11.33□□□□□ -0.6
SMPD3-206ENST00000566009 TINF2Q9BSI4 451 aa11.33□□□□□ -0.6
SMPD3-206ENST00000566009 SH2B1Q9NRF2 756 aaPredicted RBP11.33□□□□□ -0.6
SMPD3-206ENST00000566009 SPDYE16A6NNV3 312 aaPredicted RBP11.32□□□□□ -0.6
SMPD3-206ENST00000566009 STXBP3O00186 592 aa11.32□□□□□ -0.6
SMPD3-206ENST00000566009 NPM3O75607 178 aaKnown RBP11.32□□□□□ -0.6
SMPD3-206ENST00000566009 C6orf222P0C671 652 aaPredicted RBP11.32□□□□□ -0.6
SMPD3-206ENST00000566009 ERVK-21P61565 698 aa11.32□□□□□ -0.6
SMPD3-206ENST00000566009 METTL24Q5JXM2 366 aa11.32□□□□□ -0.6
SMPD3-206ENST00000566009 KIAA2013Q8IYS2 634 aa11.32□□□□□ -0.6
SMPD3-206ENST00000566009 SLC43A3Q8NBI5 491 aa11.32□□□□□ -0.6
SMPD3-206ENST00000566009 SHCBP1Q8NEM2 672 aa11.32□□□□□ -0.6
SMPD3-206ENST00000566009 LINS1Q8NG48 757 aa11.32□□□□□ -0.6
SMPD3-206ENST00000566009 HERC5Q9UII4 1024 aaKnown RBP11.32□□□□□ -0.6
SMPD3-206ENST00000566009 FAM184BQ9ULE4 1060 aa11.32□□□□□ -0.6
SMPD3-206ENST00000566009 CLSPNQ9HAW4 1339 aa11.32□□□□□ -0.6
SMPD3-206ENST00000566009 MBTPS2O43462 519 aa11.31□□□□□ -0.6
SMPD3-206ENST00000566009 DUSP11O75319 330 aaKnown RBP11.31□□□□□ -0.6
SMPD3-206ENST00000566009 BTDP43251 543 aa11.31□□□□□ -0.6
SMPD3-206ENST00000566009 COL19A1Q14993 1142 aa11.31□□□□□ -0.6
SMPD3-206ENST00000566009 ZYXQ15942 572 aaKnown RBP11.31□□□□□ -0.6
SMPD3-206ENST00000566009 G2E3Q7L622 706 aa11.31□□□□□ -0.6
SMPD3-206ENST00000566009 VGLL2Q8N8G2 317 aa11.31□□□□□ -0.6
SMPD3-206ENST00000566009 C8orf58Q8NAV2 365 aa11.31□□□□□ -0.6
SMPD3-206ENST00000566009 CHAMP1Q96JM3 812 aa11.31□□□□□ -0.6
SMPD3-206ENST00000566009 TGS1Q96RS0 853 aaKnown RBP11.31□□□□□ -0.6
SMPD3-206ENST00000566009 SPATC1LQ9H0A9 340 aa11.31□□□□□ -0.6
SMPD3-206ENST00000566009 TRPV6Q9H1D0 765 aa11.31□□□□□ -0.6
SMPD3-206ENST00000566009 DMXL1Q9Y485 3027 aa11.31□□□□□ -0.6
SMPD3-206ENST00000566009 KIF16BQ96L93 1317 aa11.31□□□□□ -0.6
SMPD3-206ENST00000566009 IFIT1P09914 478 aaKnown RBP11.3□□□□□ -0.6
SMPD3-206ENST00000566009 RHBDL3P58872 404 aa11.3□□□□□ -0.6
SMPD3-206ENST00000566009 LRRC24Q50LG9 513 aa11.3□□□□□ -0.6
SMPD3-206ENST00000566009 GNASQ5JWF2 1037 aa11.3□□□□□ -0.6
SMPD3-206ENST00000566009 MRPL38Q96DV4 380 aaKnown RBP11.3□□□□□ -0.6
SMPD3-206ENST00000566009 FAM163AQ96GL9 167 aaPredicted RBP11.3□□□□□ -0.6
SMPD3-206ENST00000566009 CHMP4AQ9BY43 222 aa11.3□□□□□ -0.6
SMPD3-206ENST00000566009 MROH8Q9H579 483 aa11.3□□□□□ -0.6
SMPD3-206ENST00000566009 IGSF5Q9NSI5 407 aa11.3□□□□□ -0.6
SMPD3-206ENST00000566009 CLDND1Q9NY35 253 aa11.3□□□□□ -0.6
SMPD3-206ENST00000566009 CNPY2Q9Y2B0 182 aa11.3□□□□□ -0.6
SMPD3-206ENST00000566009 GPR179Q6PRD1 2367 aa11.3□□□□□ -0.6
SMPD3-206ENST00000566009 MYH2Q9UKX2 1941 aa11.29□□□□□ -0.6
SMPD3-206ENST00000566009 A0A1B0GUL7 405 aa11.29□□□□□ -0.6
SMPD3-206ENST00000566009 B4GALT4O60513 344 aa11.29□□□□□ -0.6
SMPD3-206ENST00000566009 GDF11O95390 407 aa11.29□□□□□ -0.6
SMPD3-206ENST00000566009 FCER1AP12319 257 aa11.29□□□□□ -0.6
SMPD3-206ENST00000566009 VCAM1P19320 739 aa11.29□□□□□ -0.6
SMPD3-206ENST00000566009 LTBRP36941 435 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms