RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 PCDHB10Q9UN67 800 aa7.34□□□□□ -1.23
SCFD1-221ENST00000556534 SIGLEC6O43699 453 aa7.33□□□□□ -1.24
SCFD1-221ENST00000556534 TPP2P29144 1249 aaPredicted RBP7.33□□□□□ -1.24
SCFD1-221ENST00000556534 NBPF11Q86T75 865 aa7.33□□□□□ -1.24
SCFD1-221ENST00000556534 SYTL5Q8TDW5 730 aaPredicted RBP7.33□□□□□ -1.24
SCFD1-221ENST00000556534 CARS2Q9HA77 564 aaKnown RBP7.33□□□□□ -1.24
SCFD1-221ENST00000556534 FAM86C1Q9NVL1 165 aa7.33□□□□□ -1.24
SCFD1-221ENST00000556534 ADAMTS6Q9UKP5 1117 aa7.33□□□□□ -1.24
SCFD1-221ENST00000556534 PCDHB12Q9Y5F1 795 aa7.33□□□□□ -1.24
SCFD1-221ENST00000556534 CBFA2T2O43439 604 aa7.32□□□□□ -1.24
SCFD1-221ENST00000556534 PRAMEF1O95521 474 aa7.32□□□□□ -1.24
SCFD1-221ENST00000556534 TP53P04637 393 aaPredicted RBP7.32□□□□□ -1.24
SCFD1-221ENST00000556534 ZP2Q05996 745 aa7.32□□□□□ -1.24
SCFD1-221ENST00000556534 PLCL1Q15111 1095 aa7.32□□□□□ -1.24
SCFD1-221ENST00000556534 TANGO6Q9C0B7 1094 aa7.32□□□□□ -1.24
SCFD1-221ENST00000556534 PRR13Q9NZ81 148 aa7.32□□□□□ -1.24
SCFD1-221ENST00000556534 LMCD1Q9NZU5 365 aa7.32□□□□□ -1.24
SCFD1-221ENST00000556534 DUSP13Q9UII6 198 aa7.32□□□□□ -1.24
SCFD1-221ENST00000556534 SLC7A5Q01650 507 aa7.31□□□□□ -1.24
SCFD1-221ENST00000556534 CLEC16AQ2KHT3 1053 aa7.31□□□□□ -1.24
SCFD1-221ENST00000556534 GNPTABQ3T906 1256 aa7.31□□□□□ -1.24
SCFD1-221ENST00000556534 ANKRD39Q53RE8 183 aa7.31□□□□□ -1.24
SCFD1-221ENST00000556534 XP32Q5T750 250 aa7.31□□□□□ -1.24
SCFD1-221ENST00000556534 DAGLBQ8NCG7 672 aa7.31□□□□□ -1.24
SCFD1-221ENST00000556534 ENOX1Q8TC92 643 aaKnown RBP7.31□□□□□ -1.24
SCFD1-221ENST00000556534 HNRNPLLQ8WVV9 542 aaKnown RBP7.31□□□□□ -1.24
SCFD1-221ENST00000556534 HAUS7Q99871 368 aa7.31□□□□□ -1.24
SCFD1-221ENST00000556534 KLHL25Q9H0H3 589 aa7.31□□□□□ -1.24
SCFD1-221ENST00000556534 ASCC2Q9H1I8 757 aaPredicted RBP7.31□□□□□ -1.24
SCFD1-221ENST00000556534 PRDM7Q9NQW5 492 aa7.31□□□□□ -1.24
SCFD1-221ENST00000556534 MBNL3Q9NUK0 354 aaKnown RBP7.31□□□□□ -1.24
SCFD1-221ENST00000556534 GFOD1Q9NXC2 390 aa7.31□□□□□ -1.24
SCFD1-221ENST00000556534 MINPP1Q9UNW1 487 aa7.31□□□□□ -1.24
SCFD1-221ENST00000556534 PCDHA11Q9Y5I1 949 aa7.31□□□□□ -1.24
SCFD1-221ENST00000556534 B2RBV5 119 aa7.3□□□□□ -1.24
SCFD1-221ENST00000556534 ZNF792Q3KQV3 632 aa7.3□□□□□ -1.24
SCFD1-221ENST00000556534 SLC23A3Q6PIS1 610 aa7.3□□□□□ -1.24
SCFD1-221ENST00000556534 VHLLQ6RSH7 139 aa7.3□□□□□ -1.24
SCFD1-221ENST00000556534 CBLL1Q75N03 491 aa7.3□□□□□ -1.24
SCFD1-221ENST00000556534 CREG2Q8IUH2 290 aa7.3□□□□□ -1.24
SCFD1-221ENST00000556534 TCTN2Q96GX1 697 aa7.3□□□□□ -1.24
SCFD1-221ENST00000556534 GP6Q9HCN6 339 aa7.3□□□□□ -1.24
SCFD1-221ENST00000556534 CHST7Q9NS84 486 aa7.3□□□□□ -1.24
SCFD1-221ENST00000556534 SUSD2Q9UGT4 822 aa7.3□□□□□ -1.24
SCFD1-221ENST00000556534 FBXL21Q9UKT6 434 aa7.3□□□□□ -1.24
SCFD1-221ENST00000556534 ZNF451Q9Y4E5 1061 aa7.3□□□□□ -1.24
SCFD1-221ENST00000556534 KLF4O43474 513 aa7.29□□□□□ -1.24
SCFD1-221ENST00000556534 RNASE1P07998 156 aaKnown RBP7.29□□□□□ -1.24
SCFD1-221ENST00000556534 LTKP29376 864 aa7.29□□□□□ -1.24
SCFD1-221ENST00000556534 LARP1BQ659C4 914 aaKnown RBP7.29□□□□□ -1.24
SCFD1-221ENST00000556534 ANKS3Q6ZW76 656 aa7.29□□□□□ -1.24
SCFD1-221ENST00000556534 ZNF655Q8N720 491 aaPredicted RBP7.29□□□□□ -1.24
SCFD1-221ENST00000556534 ADGRE2Q9UHX3 823 aa7.29□□□□□ -1.24
SCFD1-221ENST00000556534 EPHX1P07099 455 aa7.28□□□□□ -1.24
SCFD1-221ENST00000556534 CD247P20963 164 aa7.28□□□□□ -1.24
SCFD1-221ENST00000556534 CTSKP43235 329 aa7.28□□□□□ -1.24
SCFD1-221ENST00000556534 ZNF445P59923 1031 aa7.28□□□□□ -1.24
SCFD1-221ENST00000556534 TEKQ02763 1124 aa7.28□□□□□ -1.24
SCFD1-221ENST00000556534 EGR3Q06889 387 aa7.28□□□□□ -1.24
SCFD1-221ENST00000556534 KIAA1211LQ6NV74 962 aa7.28□□□□□ -1.24
SCFD1-221ENST00000556534 C6orf15Q6UXA7 325 aaPredicted RBP7.28□□□□□ -1.24
SCFD1-221ENST00000556534 MICAL1Q8TDZ2 1067 aa7.28□□□□□ -1.24
SCFD1-221ENST00000556534 FHOD1Q9Y613 1164 aa7.28□□□□□ -1.24
SCFD1-221ENST00000556534 STK10O94804 968 aaKnown RBP7.27□□□□□ -1.25
SCFD1-221ENST00000556534 ATP2B1P20020 1258 aa7.27□□□□□ -1.25
SCFD1-221ENST00000556534 NCAPHQ15003 741 aa7.27□□□□□ -1.25
SCFD1-221ENST00000556534 MRM1Q6IN84 353 aaKnown RBP7.27□□□□□ -1.25
SCFD1-221ENST00000556534 CRTC3Q6UUV7 619 aa7.27□□□□□ -1.25
SCFD1-221ENST00000556534 CELF2-AS1Q8N7Q2 184 aa7.27□□□□□ -1.25
SCFD1-221ENST00000556534 LRRN4CLQ8ND94 238 aa7.27□□□□□ -1.25
SCFD1-221ENST00000556534 PI4K2BQ8TCG2 481 aa7.27□□□□□ -1.25
SCFD1-221ENST00000556534 SREK1Q8WXA9 508 aaKnown RBP7.27□□□□□ -1.25
SCFD1-221ENST00000556534 ARMC5Q96C12 935 aa7.27□□□□□ -1.25
SCFD1-221ENST00000556534 WHRNQ9P202 907 aa7.27□□□□□ -1.25
SCFD1-221ENST00000556534 MEIS1O00470 390 aa7.26□□□□□ -1.25
SCFD1-221ENST00000556534 ITGA4P13612 1032 aa7.26□□□□□ -1.25
SCFD1-221ENST00000556534 SF3A1Q15459 793 aaKnown RBP7.26□□□□□ -1.25
SCFD1-221ENST00000556534 HEATR6Q6AI08 1181 aaKnown RBP7.26□□□□□ -1.25
SCFD1-221ENST00000556534 RNF111Q6ZNA4 994 aa7.26□□□□□ -1.25
SCFD1-221ENST00000556534 FAM178BQ8IXR5 827 aa7.26□□□□□ -1.25
SCFD1-221ENST00000556534 USHBP1Q8N6Y0 703 aa7.26□□□□□ -1.25
SCFD1-221ENST00000556534 ZNF513Q8N8E2 541 aaPredicted RBP7.26□□□□□ -1.25
SCFD1-221ENST00000556534 ALPK1Q96QP1 1244 aa7.26□□□□□ -1.25
SCFD1-221ENST00000556534 FOXP3Q9BZS1 431 aa7.26□□□□□ -1.25
SCFD1-221ENST00000556534 RC3H2Q9HBD1 1191 aaKnown RBP7.26□□□□□ -1.25
SCFD1-221ENST00000556534 C19orf73Q9NVV2 129 aa7.26□□□□□ -1.25
SCFD1-221ENST00000556534 SLAMF8Q9P0V8 285 aa7.26□□□□□ -1.25
SCFD1-221ENST00000556534 ZNF281Q9Y2X9 895 aa7.26□□□□□ -1.25
SCFD1-221ENST00000556534 DNAJC25-GNG10A0A024R161 153 aa7.25□□□□□ -1.25
SCFD1-221ENST00000556534 H0Y8X5 98 aa7.25□□□□□ -1.25
SCFD1-221ENST00000556534 BMP8BP34820 402 aa7.25□□□□□ -1.25
SCFD1-221ENST00000556534 FXNQ16595 210 aa7.25□□□□□ -1.25
SCFD1-221ENST00000556534 DDR2Q16832 855 aa7.25□□□□□ -1.25
SCFD1-221ENST00000556534 RALGPS1Q5JS13 557 aa7.25□□□□□ -1.25
SCFD1-221ENST00000556534 FIBCD1Q8N539 461 aa7.25□□□□□ -1.25
SCFD1-221ENST00000556534 LINC00116Q8NCU8 138 aa7.25□□□□□ -1.25
SCFD1-221ENST00000556534 DHX38Q92620 1227 aaKnown RBP7.25□□□□□ -1.25
SCFD1-221ENST00000556534 BRF1Q92994 677 aa7.25□□□□□ -1.25
SCFD1-221ENST00000556534 FGD4Q96M96 766 aa7.25□□□□□ -1.25
SCFD1-221ENST00000556534 DSCC1Q9BVC3 393 aa7.25□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms