RNA–Protein interactions for RNA: ENST00000544504.5

YBX3-215, Transcript of Y-box binding protein 3, human

TSL 3

Gene YBX3, Length 583 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-215	ENST00000544504	ARHGAP39	Q9C0H5	1083 aa		11.11	□□□□□ -0.63
YBX3-215	ENST00000544504	KAT14	Q9H8E8	782 aa		11.11	□□□□□ -0.63
YBX3-215	ENST00000544504	ZCCHC17	Q9NP64	241 aa	Known RBP	11.11	□□□□□ -0.63
YBX3-215	ENST00000544504	NAP1L2	Q9ULW6	460 aa	Predicted RBP	11.11	□□□□□ -0.63
YBX3-215	ENST00000544504	SYNPO2	Q9UMS6	1093 aa		11.11	□□□□□ -0.63
YBX3-215	ENST00000544504	KIF3A	Q9Y496	699 aa		11.11	□□□□□ -0.63
YBX3-215	ENST00000544504	GOLGA8B	A8MQT2	603 aa		11.1	□□□□□ -0.63
YBX3-215	ENST00000544504	SMIM22	K7EJ46	135 aa		11.1	□□□□□ -0.63
YBX3-215	ENST00000544504	MPHOSPH10	O00566	681 aa	Known RBP	11.1	□□□□□ -0.63
YBX3-215	ENST00000544504	ZBTB43	O43298	467 aa		11.1	□□□□□ -0.63
YBX3-215	ENST00000544504	PFKFB2	O60825	505 aa		11.1	□□□□□ -0.63
YBX3-215	ENST00000544504	CDKL5	O76039	1030 aa		11.1	□□□□□ -0.63
YBX3-215	ENST00000544504	TTLL1	O95922	423 aa		11.1	□□□□□ -0.63
YBX3-215	ENST00000544504	ASNS	P08243	561 aa		11.1	□□□□□ -0.63
YBX3-215	ENST00000544504	TOP1	P11387	765 aa	Known RBP	11.1	□□□□□ -0.63
YBX3-215	ENST00000544504	PDIA4	P13667	645 aa	Known RBP	11.1	□□□□□ -0.63
YBX3-215	ENST00000544504	EVX2	Q03828	476 aa		11.1	□□□□□ -0.63
YBX3-215	ENST00000544504	APOBR	Q0VD83	1088 aa		11.1	□□□□□ -0.63
YBX3-215	ENST00000544504	APOA5	Q6Q788	366 aa		11.1	□□□□□ -0.63
YBX3-215	ENST00000544504	MAP3K14	Q99558	947 aa		11.1	□□□□□ -0.63
YBX3-215	ENST00000544504	ZKSCAN3	Q9BRR0	538 aa		11.1	□□□□□ -0.63
YBX3-215	ENST00000544504	LLPH	Q9BRT6	129 aa	Known RBP	11.1	□□□□□ -0.63
YBX3-215	ENST00000544504	SH2D4A	Q9H788	454 aa		11.1	□□□□□ -0.63
YBX3-215	ENST00000544504	DNAJC18	Q9H819	358 aa		11.1	□□□□□ -0.63
YBX3-215	ENST00000544504	CWC22	Q9HCG8	908 aa	Known RBP	11.1	□□□□□ -0.63
YBX3-215	ENST00000544504	MTMR4	Q9NYA4	1195 aa		11.1	□□□□□ -0.63
YBX3-215	ENST00000544504	NYAP2	Q9P242	653 aa		11.1	□□□□□ -0.63
YBX3-215	ENST00000544504	TPCN1	Q9ULQ1	816 aa		11.1	□□□□□ -0.63
YBX3-215	ENST00000544504	STX8	Q9UNK0	236 aa		11.1	□□□□□ -0.63
YBX3-215	ENST00000544504	LAMA2	P24043	3122 aa	Known RBP	11.1	□□□□□ -0.63
YBX3-215	ENST00000544504	SIPA1L1	O43166	1804 aa		11.09	□□□□□ -0.63
YBX3-215	ENST00000544504	EYS	Q5T1H1	3165 aa		11.09	□□□□□ -0.63
YBX3-215	ENST00000544504	NID2	Q14112	1375 aa		11.09	□□□□□ -0.63
YBX3-215	ENST00000544504	IGKV6D-41	A0A0C4DH26	115 aa		11.09	□□□□□ -0.63
YBX3-215	ENST00000544504	CPLX1	O14810	134 aa		11.09	□□□□□ -0.63
YBX3-215	ENST00000544504	CTNND1	O60716	968 aa	Known RBP	11.09	□□□□□ -0.63
YBX3-215	ENST00000544504	AKR1B1	P15121	316 aa		11.09	□□□□□ -0.63
YBX3-215	ENST00000544504	PDIA3	P30101	505 aa	Known RBP	11.09	□□□□□ -0.63
YBX3-215	ENST00000544504	KIF5B	P33176	963 aa		11.09	□□□□□ -0.63
YBX3-215	ENST00000544504	CAP2	P40123	477 aa		11.09	□□□□□ -0.63
YBX3-215	ENST00000544504	NOV	P48745	357 aa		11.09	□□□□□ -0.63
YBX3-215	ENST00000544504	GNAQ	P50148	359 aa		11.09	□□□□□ -0.63
YBX3-215	ENST00000544504	VGLL4	Q14135	290 aa		11.09	□□□□□ -0.63
YBX3-215	ENST00000544504	ME3	Q16798	604 aa		11.09	□□□□□ -0.63
YBX3-215	ENST00000544504	PPP1R3F	Q6ZSY5	799 aa	Predicted RBP	11.09	□□□□□ -0.63
YBX3-215	ENST00000544504	ZNF654	Q8IZM8	581 aa		11.09	□□□□□ -0.63
YBX3-215	ENST00000544504	GTF3C6	Q969F1	213 aa		11.09	□□□□□ -0.63
YBX3-215	ENST00000544504	RBM28	Q9NW13	759 aa	Known RBP	11.09	□□□□□ -0.63
YBX3-215	ENST00000544504	SRRD	Q9UH36	339 aa		11.09	□□□□□ -0.63
YBX3-215	ENST00000544504	STXBP5L	Q9Y2K9	1186 aa		11.09	□□□□□ -0.63
YBX3-215	ENST00000544504	CSAD	Q9Y600	493 aa		11.09	□□□□□ -0.63
YBX3-215	ENST00000544504	GOLGA8A	A7E2F4	631 aa		11.08	□□□□□ -0.64
YBX3-215	ENST00000544504	EVI5	O60447	810 aa		11.08	□□□□□ -0.64
YBX3-215	ENST00000544504	CETP	P11597	493 aa		11.08	□□□□□ -0.64
YBX3-215	ENST00000544504	CCL5	P13501	91 aa		11.08	□□□□□ -0.64
YBX3-215	ENST00000544504	HOXD10	P28358	340 aa		11.08	□□□□□ -0.64
YBX3-215	ENST00000544504	GRK4	P32298	578 aa		11.08	□□□□□ -0.64
YBX3-215	ENST00000544504	METAP2	P50579	478 aa	Known RBP eCLIP	11.08	□□□□□ -0.64
YBX3-215	ENST00000544504	MAP3K9	P80192	1104 aa		11.08	□□□□□ -0.64
YBX3-215	ENST00000544504	HMGN5	P82970	282 aa	Known RBP	11.08	□□□□□ -0.64
YBX3-215	ENST00000544504	COL9A3	Q14050	684 aa	Predicted RBP	11.08	□□□□□ -0.64
YBX3-215	ENST00000544504	PNMA1	Q8ND90	353 aa		11.08	□□□□□ -0.64
YBX3-215	ENST00000544504	CTCFL	Q8NI51	663 aa	Predicted RBP	11.08	□□□□□ -0.64
YBX3-215	ENST00000544504	RAET1E	Q8TD07	263 aa		11.08	□□□□□ -0.64
YBX3-215	ENST00000544504	CNKSR2	Q8WXI2	1034 aa		11.08	□□□□□ -0.64
YBX3-215	ENST00000544504	CEP95	Q96GE4	821 aa		11.08	□□□□□ -0.64
YBX3-215	ENST00000544504	RNF208	Q9H0X6	261 aa		11.08	□□□□□ -0.64
YBX3-215	ENST00000544504	ARHGEF10L	Q9HCE6	1279 aa		11.08	□□□□□ -0.64
YBX3-215	ENST00000544504	IL17RB	Q9NRM6	502 aa		11.08	□□□□□ -0.64
YBX3-215	ENST00000544504	ZNF112	Q9UJU3	913 aa		11.08	□□□□□ -0.64
YBX3-215	ENST00000544504	SMC3	Q9UQE7	1217 aa		11.08	□□□□□ -0.64
YBX3-215	ENST00000544504	FAM196B	A6NMK8	535 aa		11.07	□□□□□ -0.64
YBX3-215	ENST00000544504	FARP2	O94887	1054 aa	Predicted RBP	11.07	□□□□□ -0.64
YBX3-215	ENST00000544504	GH2	P01242	217 aa		11.07	□□□□□ -0.64
YBX3-215	ENST00000544504	CAPN2	P17655	700 aa		11.07	□□□□□ -0.64
YBX3-215	ENST00000544504	UBXN2A	P68543	259 aa		11.07	□□□□□ -0.64
YBX3-215	ENST00000544504	ICA1	Q05084	483 aa		11.07	□□□□□ -0.64
YBX3-215	ENST00000544504	RTN1	Q16799	776 aa		11.07	□□□□□ -0.64
YBX3-215	ENST00000544504	RCSD1	Q6JBY9	416 aa		11.07	□□□□□ -0.64
YBX3-215	ENST00000544504	MIGA2	Q7L4E1	593 aa		11.07	□□□□□ -0.64
YBX3-215	ENST00000544504	MICU3	Q86XE3	530 aa		11.07	□□□□□ -0.64
YBX3-215	ENST00000544504	CCDC83	Q8IWF9	413 aa		11.07	□□□□□ -0.64
YBX3-215	ENST00000544504	DEFB123	Q8N688	67 aa		11.07	□□□□□ -0.64
YBX3-215	ENST00000544504	DDX55	Q8NHQ9	600 aa	Known RBP eCLIP	11.07	□□□□□ -0.64
YBX3-215	ENST00000544504	MKL1	Q969V6	931 aa		11.07	□□□□□ -0.64
YBX3-215	ENST00000544504	TRIM47	Q96LD4	638 aa		11.07	□□□□□ -0.64
YBX3-215	ENST00000544504	TMEM47	Q9BQJ4	181 aa		11.07	□□□□□ -0.64
YBX3-215	ENST00000544504	LZTS2	Q9BRK4	669 aa		11.07	□□□□□ -0.64
YBX3-215	ENST00000544504	COL25A1	Q9BXS0	654 aa	Predicted RBP	11.07	□□□□□ -0.64
YBX3-215	ENST00000544504	GPHN	Q9NQX3	736 aa	Predicted RBP	11.07	□□□□□ -0.64
YBX3-215	ENST00000544504	PICK1	Q9NRD5	415 aa		11.07	□□□□□ -0.64
YBX3-215	ENST00000544504	BRPF3	Q9ULD4	1205 aa		11.07	□□□□□ -0.64
YBX3-215	ENST00000544504	ZBTB21	Q9ULJ3	1066 aa		11.07	□□□□□ -0.64
YBX3-215	ENST00000544504	GREB1L	Q9C091	1923 aa	Predicted RBP	11.07	□□□□□ -0.64
YBX3-215	ENST00000544504	SPDYE5	A6NIY4	337 aa		11.06	□□□□□ -0.64
YBX3-215	ENST00000544504	PHF20L1	A8MW92	1017 aa		11.06	□□□□□ -0.64
YBX3-215	ENST00000544504	BTBD19	C9JJ37	291 aa		11.06	□□□□□ -0.64
YBX3-215	ENST00000544504	NMT2	O60551	498 aa		11.06	□□□□□ -0.64
YBX3-215	ENST00000544504	GDF11	O95390	407 aa		11.06	□□□□□ -0.64
YBX3-215	ENST00000544504	PDC	P20941	246 aa		11.06	□□□□□ -0.64

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