RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 FKBP1AP62942 108 aaKnown RBP11.23□□□□□ -0.61
SS18-205ENST00000542420 LRMPQ12912 555 aa11.23□□□□□ -0.61
SS18-205ENST00000542420 FAM47AQ5JRC9 791 aa11.23□□□□□ -0.61
SS18-205ENST00000542420 CMTR1Q8N1G2 835 aaKnown RBP11.23□□□□□ -0.61
SS18-205ENST00000542420 IQUBQ8NA54 791 aa11.23□□□□□ -0.61
SS18-205ENST00000542420 TBC1D16Q8TBP0 767 aa11.23□□□□□ -0.61
SS18-205ENST00000542420 ARID3AQ99856 593 aa11.23□□□□□ -0.61
SS18-205ENST00000542420 TOP1P11387 765 aaKnown RBP11.22□□□□□ -0.61
SS18-205ENST00000542420 CCDC82Q8N4S0 544 aa11.22□□□□□ -0.61
SS18-205ENST00000542420 MRIQ9BWK5 157 aa11.22□□□□□ -0.61
SS18-205ENST00000542420 CUEDC2Q9H467 287 aa11.22□□□□□ -0.61
SS18-205ENST00000542420 RMND1Q9NWS8 449 aa11.22□□□□□ -0.61
SS18-205ENST00000542420 BARHL2Q9NY43 387 aa11.22□□□□□ -0.61
SS18-205ENST00000542420 SWAP70Q9UH65 585 aa11.22□□□□□ -0.61
SS18-205ENST00000542420 ATP6V0A2Q9Y487 856 aa11.22□□□□□ -0.61
SS18-205ENST00000542420 PSME4Q14997 1843 aa11.22□□□□□ -0.61
SS18-205ENST00000542420 SMIM22K7EJ46 135 aa11.21□□□□□ -0.61
SS18-205ENST00000542420 RHBDL3P58872 404 aa11.21□□□□□ -0.61
SS18-205ENST00000542420 DPYDQ12882 1025 aa11.21□□□□□ -0.61
SS18-205ENST00000542420 E2F4Q16254 413 aa11.21□□□□□ -0.61
SS18-205ENST00000542420 TMC6Q7Z403 805 aa11.21□□□□□ -0.61
SS18-205ENST00000542420 TEX11Q8IYF3 940 aa11.21□□□□□ -0.61
SS18-205ENST00000542420 CCAR2Q8N163 923 aaKnown RBP11.21□□□□□ -0.61
SS18-205ENST00000542420 NLGN1Q8N2Q7 840 aa11.21□□□□□ -0.61
SS18-205ENST00000542420 ERCC4Q92889 916 aaPredicted RBP11.21□□□□□ -0.61
SS18-205ENST00000542420 CTAGE1Q96RT6 745 aa11.21□□□□□ -0.61
SS18-205ENST00000542420 TMX1Q9H3N1 280 aa11.21□□□□□ -0.61
SS18-205ENST00000542420 FLT1P17948 1338 aa11.21□□□□□ -0.61
SS18-205ENST00000542420 PPEF1O14829 653 aaPredicted RBP11.21□□□□□ -0.62
SS18-205ENST00000542420 PLSCR1O15162 318 aa11.21□□□□□ -0.62
SS18-205ENST00000542420 GTPBP6O43824 516 aaPredicted RBP11.21□□□□□ -0.62
SS18-205ENST00000542420 TNNT1P13805 278 aa11.21□□□□□ -0.62
SS18-205ENST00000542420 ALDH1B1P30837 517 aa11.21□□□□□ -0.62
SS18-205ENST00000542420 CDK8P49336 464 aa11.21□□□□□ -0.62
SS18-205ENST00000542420 PTGDRQ13258 359 aa11.21□□□□□ -0.62
SS18-205ENST00000542420 TPD52L1Q16890 204 aaPredicted RBP11.21□□□□□ -0.62
SS18-205ENST00000542420 PPP1R18Q6NYC8 613 aa11.21□□□□□ -0.62
SS18-205ENST00000542420 SMIM5Q71RC9 77 aa11.21□□□□□ -0.62
SS18-205ENST00000542420 KRT27Q7Z3Y8 459 aa11.21□□□□□ -0.62
SS18-205ENST00000542420 KRT25Q7Z3Z0 450 aa11.21□□□□□ -0.62
SS18-205ENST00000542420 PIAS4Q8N2W9 510 aaPredicted RBP11.21□□□□□ -0.62
SS18-205ENST00000542420 MPNDQ8N594 471 aa11.21□□□□□ -0.62
SS18-205ENST00000542420 TGFBRAP1Q8WUH2 860 aa11.21□□□□□ -0.62
SS18-205ENST00000542420 SYMPKQ92797 1274 aaKnown RBP11.21□□□□□ -0.62
SS18-205ENST00000542420 PAGE5Q96GU1 130 aa11.21□□□□□ -0.62
SS18-205ENST00000542420 AK8Q96MA6 479 aa11.21□□□□□ -0.62
SS18-205ENST00000542420 ZMYND12Q9H0C1 365 aa11.21□□□□□ -0.62
SS18-205ENST00000542420 MYH4Q9Y623 1939 aa11.21□□□□□ -0.62
SS18-205ENST00000542420 GOLGA6L9A6NEM1 432 aa11.2□□□□□ -0.62
SS18-205ENST00000542420 SERPINC1P01008 464 aa11.2□□□□□ -0.62
SS18-205ENST00000542420 NPR1P16066 1061 aa11.2□□□□□ -0.62
SS18-205ENST00000542420 BMP6P22004 513 aa11.2□□□□□ -0.62
SS18-205ENST00000542420 LMOD1P29536 600 aaPredicted RBP11.2□□□□□ -0.62
SS18-205ENST00000542420 GNA11P29992 359 aa11.2□□□□□ -0.62
SS18-205ENST00000542420 GRIN1Q05586 938 aa11.2□□□□□ -0.62
SS18-205ENST00000542420 DDR1Q08345 913 aa11.2□□□□□ -0.62
SS18-205ENST00000542420 EARS2Q5JPH6 523 aaKnown RBP11.2□□□□□ -0.62
SS18-205ENST00000542420 SPATA1Q5VX52 437 aa11.2□□□□□ -0.62
SS18-205ENST00000542420 FILIP1Q7Z7B0 1213 aa11.2□□□□□ -0.62
SS18-205ENST00000542420 C4orf32Q8N8J7 132 aa11.2□□□□□ -0.62
SS18-205ENST00000542420 TMEM47Q9BQJ4 181 aa11.2□□□□□ -0.62
SS18-205ENST00000542420 CCSER1Q9C0I3 900 aa11.2□□□□□ -0.62
SS18-205ENST00000542420 NMT2O60551 498 aa11.2□□□□□ -0.62
SS18-205ENST00000542420 PPP1R2P41236 205 aa11.2□□□□□ -0.62
SS18-205ENST00000542420 SPAG1Q07617 926 aa11.2□□□□□ -0.62
SS18-205ENST00000542420 TBX2Q13207 712 aaPredicted RBP11.2□□□□□ -0.62
SS18-205ENST00000542420 PTPN14Q15678 1187 aa11.2□□□□□ -0.62
SS18-205ENST00000542420 MFSD14BQ5SR56 506 aa11.2□□□□□ -0.62
SS18-205ENST00000542420 ZNF710Q8N1W2 664 aa11.2□□□□□ -0.62
SS18-205ENST00000542420 C17orf53Q8N3J3 647 aaPredicted RBP11.2□□□□□ -0.62
SS18-205ENST00000542420 EYA3Q99504 573 aa11.2□□□□□ -0.62
SS18-205ENST00000542420 ARFGEF1Q9Y6D6 1849 aa11.19□□□□□ -0.62
SS18-205ENST00000542420 CCDC194A0A1B0GVG4 234 aa11.19□□□□□ -0.62
SS18-205ENST00000542420 STXBP3O00186 592 aa11.19□□□□□ -0.62
SS18-205ENST00000542420 PARP1P09874 1014 aaKnown RBP11.19□□□□□ -0.62
SS18-205ENST00000542420 PDE6BP35913 854 aa11.19□□□□□ -0.62
SS18-205ENST00000542420 GABPAQ06546 454 aa11.19□□□□□ -0.62
SS18-205ENST00000542420 CUL4BQ13620 913 aa11.19□□□□□ -0.62
SS18-205ENST00000542420 DIXDC1Q155Q3 683 aa11.19□□□□□ -0.62
SS18-205ENST00000542420 ASPRV1Q53RT3 343 aa11.19□□□□□ -0.62
SS18-205ENST00000542420 ARMCX5Q6P1M9 558 aa11.19□□□□□ -0.62
SS18-205ENST00000542420 HHIPL2Q6UWX4 724 aa11.19□□□□□ -0.62
SS18-205ENST00000542420 PIK3AP1Q6ZUJ8 805 aa11.19□□□□□ -0.62
SS18-205ENST00000542420 CCDC24Q8N4L8 307 aa11.19□□□□□ -0.62
SS18-205ENST00000542420 QTRT2Q9H974 415 aaKnown RBP11.19□□□□□ -0.62
SS18-205ENST00000542420 TNS1Q9HBL0 1735 aaKnown RBP11.19□□□□□ -0.62
SS18-205ENST00000542420 A0A087WWV3 80 aa11.19□□□□□ -0.62
SS18-205ENST00000542420 COL2A1P02458 1487 aaPredicted RBP11.19□□□□□ -0.62
SS18-205ENST00000542420 PRR29P0C7W0 189 aa11.19□□□□□ -0.62
SS18-205ENST00000542420 KCNB1Q14721 858 aa11.19□□□□□ -0.62
SS18-205ENST00000542420 ZNF174Q15697 407 aa11.19□□□□□ -0.62
SS18-205ENST00000542420 CFAP100Q494V2 611 aa11.19□□□□□ -0.62
SS18-205ENST00000542420 CEP135Q66GS9 1140 aa11.19□□□□□ -0.62
SS18-205ENST00000542420 PDXDC2PQ6P474 469 aa11.19□□□□□ -0.62
SS18-205ENST00000542420 DHX58Q96C10 678 aa11.19□□□□□ -0.62
SS18-205ENST00000542420 C6orf50Q9HD87 102 aa11.19□□□□□ -0.62
SS18-205ENST00000542420 FANCLQ9NW38 375 aa11.19□□□□□ -0.62
SS18-205ENST00000542420 POLLQ9UGP5 575 aa11.19□□□□□ -0.62
SS18-205ENST00000542420 BAZ2BQ9UIF8 2168 aaKnown RBP11.19□□□□□ -0.62
SS18-205ENST00000542420 NFE2L3Q9Y4A8 694 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms