RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-216	ENST00000525293	SLC38A3	Q99624	504 aa		4.03	□□□□□ -1.76
CD44-216	ENST00000525293	C19orf44	Q9H6X5	657 aa		4.03	□□□□□ -1.76
CD44-216	ENST00000525293	DDX41	Q9UJV9	622 aa	Known RBP	4.03	□□□□□ -1.76
CD44-216	ENST00000525293	SSU72P8	A0A1W2PR75	194 aa		4.02	□□□□□ -1.77
CD44-216	ENST00000525293	MEIS3P2	A8K0S8	358 aa		4.02	□□□□□ -1.77
CD44-216	ENST00000525293	TNFRSF10C	O14798	259 aa		4.02	□□□□□ -1.77
CD44-216	ENST00000525293	VAMP1	P23763	118 aa		4.02	□□□□□ -1.77
CD44-216	ENST00000525293	RPL10	P27635	214 aa	Known RBP	4.02	□□□□□ -1.77
CD44-216	ENST00000525293	FBXW10	Q5XX13	1052 aa		4.02	□□□□□ -1.77
CD44-216	ENST00000525293	DAGLB	Q8NCG7	672 aa		4.02	□□□□□ -1.77
CD44-216	ENST00000525293	SYTL5	Q8TDW5	730 aa	Predicted RBP	4.02	□□□□□ -1.77
CD44-216	ENST00000525293	SLC6A18	Q96N87	628 aa		4.02	□□□□□ -1.77
CD44-216	ENST00000525293	HDAC8	Q9BY41	377 aa		4.02	□□□□□ -1.77
CD44-216	ENST00000525293	FOXP3	Q9BZS1	431 aa		4.02	□□□□□ -1.77
CD44-216	ENST00000525293	PRDM14	Q9GZV8	571 aa		4.02	□□□□□ -1.77
CD44-216	ENST00000525293	MKRN2	Q9H000	416 aa	Known RBP	4.02	□□□□□ -1.77
CD44-216	ENST00000525293	NSUN3	Q9H649	340 aa	Known RBP	4.02	□□□□□ -1.77
CD44-216	ENST00000525293	KCNK12	Q9HB15	430 aa		4.02	□□□□□ -1.77
CD44-216	ENST00000525293	SP110	Q9HB58	689 aa		4.02	□□□□□ -1.77
CD44-216	ENST00000525293	EBF1	Q9UH73	591 aa		4.02	□□□□□ -1.77
CD44-216	ENST00000525293	ZNRF3	Q9ULT6	936 aa		4.02	□□□□□ -1.77
CD44-216	ENST00000525293	MINPP1	Q9UNW1	487 aa		4.02	□□□□□ -1.77
CD44-216	ENST00000525293	PRAMEF1	O95521	474 aa		4.01	□□□□□ -1.77
CD44-216	ENST00000525293	ACR	P10323	421 aa		4.01	□□□□□ -1.77
CD44-216	ENST00000525293	PCBP3	P57721	371 aa	Known RBP	4.01	□□□□□ -1.77
CD44-216	ENST00000525293	PKN1	Q16512	942 aa		4.01	□□□□□ -1.77
CD44-216	ENST00000525293	TIGD5	Q53EQ6	642 aa		4.01	□□□□□ -1.77
CD44-216	ENST00000525293	C9orf131	Q5VYM1	1079 aa		4.01	□□□□□ -1.77
CD44-216	ENST00000525293	INTS3	Q68E01	1043 aa	Known RBP	4.01	□□□□□ -1.77
CD44-216	ENST00000525293	SYDE1	Q6ZW31	735 aa	Predicted RBP	4.01	□□□□□ -1.77
CD44-216	ENST00000525293	WAPL	Q7Z5K2	1190 aa		4.01	□□□□□ -1.77
CD44-216	ENST00000525293	METTL16	Q86W50	562 aa	Known RBP	4.01	□□□□□ -1.77
CD44-216	ENST00000525293	SPPL2C	Q8IUH8	684 aa		4.01	□□□□□ -1.77
CD44-216	ENST00000525293	ZNF654	Q8IZM8	581 aa		4.01	□□□□□ -1.77
CD44-216	ENST00000525293	OXR1	Q8N573	874 aa		4.01	□□□□□ -1.77
CD44-216	ENST00000525293	ZNF655	Q8N720	491 aa	Predicted RBP	4.01	□□□□□ -1.77
CD44-216	ENST00000525293	MRRF	Q96E11	262 aa	Known RBP	4.01	□□□□□ -1.77
CD44-216	ENST00000525293	RNF32	Q9H0A6	362 aa		4.01	□□□□□ -1.77
CD44-216	ENST00000525293	ZMYM5	Q9UJ78	669 aa		4.01	□□□□□ -1.77
CD44-216	ENST00000525293	FBXL21	Q9UKT6	434 aa		4.01	□□□□□ -1.77
CD44-216	ENST00000525293	TCFL5	Q9UL49	500 aa		4.01	□□□□□ -1.77
CD44-216	ENST00000525293	PPT2	Q9UMR5	302 aa		4.01	□□□□□ -1.77
CD44-216	ENST00000525293	FITM1	A5D6W6	292 aa		4	□□□□□ -1.77
CD44-216	ENST00000525293		C9IYK1	514 aa		4	□□□□□ -1.77
CD44-216	ENST00000525293	MEIS1	O00470	390 aa		4	□□□□□ -1.77
CD44-216	ENST00000525293	SIGLEC6	O43699	453 aa		4	□□□□□ -1.77
CD44-216	ENST00000525293	FKTN	O75072	461 aa		4	□□□□□ -1.77
CD44-216	ENST00000525293	SYP	P08247	313 aa		4	□□□□□ -1.77
CD44-216	ENST00000525293	IMPDH2	P12268	514 aa		4	□□□□□ -1.77
CD44-216	ENST00000525293	DUSP4	Q13115	394 aa		4	□□□□□ -1.77
CD44-216	ENST00000525293	PAK2	Q13177	524 aa		4	□□□□□ -1.77
CD44-216	ENST00000525293	AUH	Q13825	339 aa	Known RBP	4	□□□□□ -1.77
CD44-216	ENST00000525293	ZPBP2	Q6X784	338 aa		4	□□□□□ -1.77
CD44-216	ENST00000525293	RNF111	Q6ZNA4	994 aa		4	□□□□□ -1.77
CD44-216	ENST00000525293	RUFY4	Q6ZNE9	571 aa		4	□□□□□ -1.77
CD44-216	ENST00000525293	LILRA2	Q8N149	483 aa		4	□□□□□ -1.77
CD44-216	ENST00000525293	LINC00116	Q8NCU8	138 aa		4	□□□□□ -1.77
CD44-216	ENST00000525293	LINC01599	Q8WXQ3	324 aa		4	□□□□□ -1.77
CD44-216	ENST00000525293	DHRS1	Q96LJ7	313 aa		4	□□□□□ -1.77
CD44-216	ENST00000525293	G6PC3	Q9BUM1	346 aa		4	□□□□□ -1.77
CD44-216	ENST00000525293	DCP1A	Q9NPI6	582 aa	Predicted RBP	4	□□□□□ -1.77
CD44-216	ENST00000525293	CHST7	Q9NS84	486 aa		4	□□□□□ -1.77
CD44-216	ENST00000525293	GFOD1	Q9NXC2	390 aa		4	□□□□□ -1.77
CD44-216	ENST00000525293	KIAA1522	Q9P206	1035 aa	Predicted RBP	4	□□□□□ -1.77
CD44-216	ENST00000525293	SUCO	Q9UBS9	1254 aa	Known RBP	4	□□□□□ -1.77
CD44-216	ENST00000525293	ZNF281	Q9Y2X9	895 aa		4	□□□□□ -1.77
CD44-216	ENST00000525293	UNCX	A6NJT0	531 aa		3.99	□□□□□ -1.77
CD44-216	ENST00000525293	PSPN	O60542	156 aa		3.99	□□□□□ -1.77
CD44-216	ENST00000525293	GALK1	P51570	392 aa		3.99	□□□□□ -1.77
CD44-216	ENST00000525293	JAG1	P78504	1218 aa		3.99	□□□□□ -1.77
CD44-216	ENST00000525293	HDLBP	Q00341	1268 aa	Known RBP	3.99	□□□□□ -1.77
CD44-216	ENST00000525293	CHRNE	Q04844	493 aa		3.99	□□□□□ -1.77
CD44-216	ENST00000525293	NR0B2	Q15466	257 aa		3.99	□□□□□ -1.77
CD44-216	ENST00000525293	BBS9	Q3SYG4	887 aa		3.99	□□□□□ -1.77
CD44-216	ENST00000525293	TDRD10	Q5VZ19	366 aa	Known RBP	3.99	□□□□□ -1.77
CD44-216	ENST00000525293	CCDC81	Q6ZN84	652 aa		3.99	□□□□□ -1.77
CD44-216	ENST00000525293	NT5DC4	Q86YG4	428 aa		3.99	□□□□□ -1.77
CD44-216	ENST00000525293	SIRT2	Q8IXJ6	389 aa		3.99	□□□□□ -1.77
CD44-216	ENST00000525293	CCDC144CP	Q8IYA2	1237 aa		3.99	□□□□□ -1.77
CD44-216	ENST00000525293	ANKS4B	Q8N8V4	417 aa		3.99	□□□□□ -1.77
CD44-216	ENST00000525293	FBXO15	Q8NCQ5	510 aa	Predicted RBP	3.99	□□□□□ -1.77
CD44-216	ENST00000525293	RGS22	Q8NE09	1264 aa		3.99	□□□□□ -1.77
CD44-216	ENST00000525293	TM9SF2	Q99805	663 aa		3.99	□□□□□ -1.77
CD44-216	ENST00000525293	EPB41L4B	Q9H329	900 aa		3.99	□□□□□ -1.77
CD44-216	ENST00000525293	GINM1	Q9NU53	330 aa		3.99	□□□□□ -1.77
CD44-216	ENST00000525293	GPR160	Q9UJ42	338 aa		3.99	□□□□□ -1.77
CD44-216	ENST00000525293	EFR3B	Q9Y2G0	817 aa		3.99	□□□□□ -1.77
CD44-216	ENST00000525293	PCDHB12	Q9Y5F1	795 aa		3.99	□□□□□ -1.77
CD44-216	ENST00000525293	TMEM82	A0PJX8	343 aa		3.98	□□□□□ -1.77
CD44-216	ENST00000525293	DBX1	A6NMT0	343 aa		3.98	□□□□□ -1.77
CD44-216	ENST00000525293	USP2	O75604	605 aa	Predicted RBP	3.98	□□□□□ -1.77
CD44-216	ENST00000525293	TP53	P04637	393 aa	Predicted RBP	3.98	□□□□□ -1.77
CD44-216	ENST00000525293	GUCY2C	P25092	1073 aa		3.98	□□□□□ -1.77
CD44-216	ENST00000525293	CTSK	P43235	329 aa		3.98	□□□□□ -1.77
CD44-216	ENST00000525293	RAP1GAP	P47736	663 aa		3.98	□□□□□ -1.77
CD44-216	ENST00000525293	PMS1	P54277	932 aa	Known RBP	3.98	□□□□□ -1.77
CD44-216	ENST00000525293	SLC14A2	Q15849	920 aa		3.98	□□□□□ -1.77
CD44-216	ENST00000525293	ZYX	Q15942	572 aa	Known RBP	3.98	□□□□□ -1.77
CD44-216	ENST00000525293	UNC5A	Q6ZN44	842 aa		3.98	□□□□□ -1.77
CD44-216	ENST00000525293	C7orf61	Q8IZ16	206 aa		3.98	□□□□□ -1.77

Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms