RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 MTRQ99707 1265 aa9.75□□□□□ -0.85
USP40-203ENST00000427112 TMEM60Q9H2L4 133 aa9.75□□□□□ -0.85
USP40-203ENST00000427112 ANKZF1Q9H8Y5 726 aa9.75□□□□□ -0.85
USP40-203ENST00000427112 SLC39A2Q9NP94 309 aa9.75□□□□□ -0.85
USP40-203ENST00000427112 XDHP47989 1333 aa9.75□□□□□ -0.85
USP40-203ENST00000427112 CSF1RP07333 972 aa9.75□□□□□ -0.85
USP40-203ENST00000427112 IL17AQ16552 155 aa9.75□□□□□ -0.85
USP40-203ENST00000427112 TAF3Q5VWG9 929 aa9.75□□□□□ -0.85
USP40-203ENST00000427112 MMS19Q96T76 1030 aa9.75□□□□□ -0.85
USP40-203ENST00000427112 SRP68Q9UHB9 627 aaKnown RBP9.75□□□□□ -0.85
USP40-203ENST00000427112 EP400Q96L91 3159 aa9.75□□□□□ -0.85
USP40-203ENST00000427112 FAM205AQ6ZU69 1335 aa9.75□□□□□ -0.85
USP40-203ENST00000427112 RIC1Q4ADV7 1423 aa9.74□□□□□ -0.85
USP40-203ENST00000427112 ESYT3A0FGR9 886 aa9.74□□□□□ -0.85
USP40-203ENST00000427112 ERVV-2B6SEH9 535 aa9.74□□□□□ -0.85
USP40-203ENST00000427112 CYP19A1P11511 503 aaPredicted RBP9.74□□□□□ -0.85
USP40-203ENST00000427112 XBP1P17861 261 aa9.74□□□□□ -0.85
USP40-203ENST00000427112 TXLNAP40222 546 aa9.74□□□□□ -0.85
USP40-203ENST00000427112 MTIF2P46199 727 aaKnown RBP9.74□□□□□ -0.85
USP40-203ENST00000427112 SYCP1Q15431 976 aa9.74□□□□□ -0.85
USP40-203ENST00000427112 PKN1Q16512 942 aa9.74□□□□□ -0.85
USP40-203ENST00000427112 TSR1Q2NL82 804 aaKnown RBP9.74□□□□□ -0.85
USP40-203ENST00000427112 TYW1BQ6NUM6 668 aa9.74□□□□□ -0.85
USP40-203ENST00000427112 MAPKAPK5Q8IW41 473 aa9.74□□□□□ -0.85
USP40-203ENST00000427112 NLRC4Q9NPP4 1024 aa9.74□□□□□ -0.85
USP40-203ENST00000427112 SRPRBQ9Y5M8 271 aaKnown RBP9.74□□□□□ -0.85
USP40-203ENST00000427112 SPATA31A3Q5VYP0 1347 aa9.74□□□□□ -0.85
USP40-203ENST00000427112 LRRIQ3A6PVS8 624 aaPredicted RBP9.74□□□□□ -0.85
USP40-203ENST00000427112 EXOC5O00471 708 aa9.74□□□□□ -0.85
USP40-203ENST00000427112 MFAP3LO75121 409 aa9.74□□□□□ -0.85
USP40-203ENST00000427112 COPB1P53618 953 aaKnown RBP9.74□□□□□ -0.85
USP40-203ENST00000427112 SPATA1Q5VX52 437 aa9.74□□□□□ -0.85
USP40-203ENST00000427112 ENOX1Q8TC92 643 aaKnown RBP9.74□□□□□ -0.85
USP40-203ENST00000427112 LACRTQ9GZZ8 138 aa9.74□□□□□ -0.85
USP40-203ENST00000427112 MMRN2Q9H8L6 949 aa9.74□□□□□ -0.85
USP40-203ENST00000427112 MKNK2Q9HBH9 465 aa9.74□□□□□ -0.85
USP40-203ENST00000427112 CALCOCO1Q9P1Z2 691 aa9.74□□□□□ -0.85
USP40-203ENST00000427112 ZNF335Q9H4Z2 1342 aaPredicted RBP9.74□□□□□ -0.85
USP40-203ENST00000427112 SLIT1O75093 1534 aa9.74□□□□□ -0.85
USP40-203ENST00000427112 PPP1R3GB7ZBB8 358 aa9.74□□□□□ -0.85
USP40-203ENST00000427112 CCP110O43303 1012 aa9.74□□□□□ -0.85
USP40-203ENST00000427112 UQCRFS1P1P0C7P4 283 aa9.74□□□□□ -0.85
USP40-203ENST00000427112 UBA7P41226 1012 aa9.74□□□□□ -0.85
USP40-203ENST00000427112 TFAP4Q01664 338 aa9.74□□□□□ -0.85
USP40-203ENST00000427112 CCDC96Q2M329 555 aa9.74□□□□□ -0.85
USP40-203ENST00000427112 CADPS2Q86UW7 1296 aa9.74□□□□□ -0.85
USP40-203ENST00000427112 GOLGA6L1Q8N7Z2 621 aa9.74□□□□□ -0.85
USP40-203ENST00000427112 VGLL2Q8N8G2 317 aa9.74□□□□□ -0.85
USP40-203ENST00000427112 WASF1Q92558 559 aa9.74□□□□□ -0.85
USP40-203ENST00000427112 GOLPH3Q9H4A6 298 aa9.74□□□□□ -0.85
USP40-203ENST00000427112 MLXIPQ9HAP2 919 aa9.74□□□□□ -0.85
USP40-203ENST00000427112 BRMS1Q9HCU9 246 aa9.74□□□□□ -0.85
USP40-203ENST00000427112 DACH1Q9UI36 760 aa9.74□□□□□ -0.85
USP40-203ENST00000427112 PACSIN2Q9UNF0 486 aaPredicted RBP9.74□□□□□ -0.85
USP40-203ENST00000427112 BCS1LQ9Y276 419 aa9.74□□□□□ -0.85
USP40-203ENST00000427112 RCCD1A6NED2 376 aa9.73□□□□□ -0.85
USP40-203ENST00000427112 BACH1O14867 736 aa9.73□□□□□ -0.85
USP40-203ENST00000427112 ZNF18P17022 549 aa9.73□□□□□ -0.85
USP40-203ENST00000427112 TECP42680 631 aa9.73□□□□□ -0.85
USP40-203ENST00000427112 CRKLP46109 303 aaKnown RBP9.73□□□□□ -0.85
USP40-203ENST00000427112 ASIC1P78348 528 aa9.73□□□□□ -0.85
USP40-203ENST00000427112 SRGAP1Q7Z6B7 1085 aa9.73□□□□□ -0.85
USP40-203ENST00000427112 GPR161Q8N6U8 529 aaKnown RBP9.73□□□□□ -0.85
USP40-203ENST00000427112 NOC3LQ8WTT2 800 aaKnown RBP9.73□□□□□ -0.85
USP40-203ENST00000427112 HDAC7Q8WUI4 952 aa9.73□□□□□ -0.85
USP40-203ENST00000427112 BPIFA3Q9BQP9 254 aa9.73□□□□□ -0.85
USP40-203ENST00000427112 FAM204AQ9H8W3 233 aa9.73□□□□□ -0.85
USP40-203ENST00000427112 ADD3Q9UEY8 706 aaKnown RBP9.73□□□□□ -0.85
USP40-203ENST00000427112 MARF1Q9Y4F3 1742 aaKnown RBP9.73□□□□□ -0.85
USP40-203ENST00000427112 CCDC194A0A1B0GVG4 234 aa9.73□□□□□ -0.85
USP40-203ENST00000427112 MYBL2P10244 700 aa9.73□□□□□ -0.85
USP40-203ENST00000427112 TXKP42681 527 aa9.73□□□□□ -0.85
USP40-203ENST00000427112 ATP1A2P50993 1020 aa9.73□□□□□ -0.85
USP40-203ENST00000427112 PAK1Q13153 545 aa9.73□□□□□ -0.85
USP40-203ENST00000427112 GPS2Q13227 327 aa9.73□□□□□ -0.85
USP40-203ENST00000427112 LLGL1Q15334 1064 aa9.73□□□□□ -0.85
USP40-203ENST00000427112 KSR1Q8IVT5 923 aa9.73□□□□□ -0.85
USP40-203ENST00000427112 NAPGQ99747 312 aaPredicted RBP9.73□□□□□ -0.85
USP40-203ENST00000427112 BIN2Q9UBW5 565 aaPredicted RBP9.73□□□□□ -0.85
USP40-203ENST00000427112 SAMM50Q9Y512 469 aa9.73□□□□□ -0.85
USP40-203ENST00000427112 FRMPD2Q68DX3 1309 aaPredicted RBP9.73□□□□□ -0.85
USP40-203ENST00000427112 MARCH6O60337 910 aa9.73□□□□□ -0.85
USP40-203ENST00000427112 LEKR1Q6ZMV7 388 aa9.73□□□□□ -0.85
USP40-203ENST00000427112 GLIS3Q8NEA6 775 aa9.73□□□□□ -0.85
USP40-203ENST00000427112 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.73□□□□□ -0.856e-7■■■■□ 19.5
USP40-203ENST00000427112 SLAIN2Q9P270 581 aa9.73□□□□□ -0.85
USP40-203ENST00000427112 CDC23Q9UJX2 597 aa9.73□□□□□ -0.85
USP40-203ENST00000427112 ARHGAP23Q9P227 1491 aa9.73□□□□□ -0.85
USP40-203ENST00000427112 CCDC196A0A1B0GTZ2 297 aa9.72□□□□□ -0.85
USP40-203ENST00000427112 TAL1P17542 331 aaPredicted RBP9.72□□□□□ -0.85
USP40-203ENST00000427112 PICALMQ13492 652 aa9.72□□□□□ -0.85
USP40-203ENST00000427112 CASP8Q14790 479 aa9.72□□□□□ -0.85
USP40-203ENST00000427112 GRIK5Q16478 980 aa9.72□□□□□ -0.85
USP40-203ENST00000427112 DEF6Q9H4E7 631 aa9.72□□□□□ -0.85
USP40-203ENST00000427112 MED1Q15648 1581 aaPredicted RBP9.72□□□□□ -0.85
USP40-203ENST00000427112 ATP2C2O75185 946 aa9.72□□□□□ -0.85
USP40-203ENST00000427112 RPN1P04843 607 aaKnown RBP9.72□□□□□ -0.85
USP40-203ENST00000427112 PARP1P09874 1014 aaKnown RBP9.72□□□□□ -0.85
USP40-203ENST00000427112 TBX2Q13207 712 aaPredicted RBP9.72□□□□□ -0.85
USP40-203ENST00000427112 MKRN4PQ13434 485 aaPredicted RBP9.72□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms