RNA–Protein interactions for RNA: ENST00000422797.5

LIMS1-207, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 1,544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-207ENST00000422797 FGRP09769 529 aa12.42□□□□□ -0.42
LIMS1-207ENST00000422797 CD44P16070 742 aaKnown RBP12.42□□□□□ -0.42
LIMS1-207ENST00000422797 AFMP43652 599 aa12.42□□□□□ -0.42
LIMS1-207ENST00000422797 AMPD2Q01433 879 aa12.42□□□□□ -0.42
LIMS1-207ENST00000422797 FUT2Q10981 343 aa12.42□□□□□ -0.42
LIMS1-207ENST00000422797 KCNJ12Q14500 433 aa12.42□□□□□ -0.42
LIMS1-207ENST00000422797 KCNB1Q14721 858 aa12.42□□□□□ -0.42
LIMS1-207ENST00000422797 E2F4Q16254 413 aa12.42□□□□□ -0.42
LIMS1-207ENST00000422797 CCDC152Q4G0S7 254 aa12.42□□□□□ -0.42
LIMS1-207ENST00000422797 PARP10Q53GL7 1025 aa12.42□□□□□ -0.42
LIMS1-207ENST00000422797 IFIT1BQ5T764 474 aaKnown RBP12.42□□□□□ -0.42
LIMS1-207ENST00000422797 RRAGBQ5VZM2 374 aa12.42□□□□□ -0.42
LIMS1-207ENST00000422797 KLHL10Q6JEL2 608 aa12.42□□□□□ -0.42
LIMS1-207ENST00000422797 OR8K1Q8NGG5 319 aa12.42□□□□□ -0.42
LIMS1-207ENST00000422797 NKX2-3Q8TAU0 364 aa12.42□□□□□ -0.42
LIMS1-207ENST00000422797 OXER1Q8TDS5 423 aa12.42□□□□□ -0.42
LIMS1-207ENST00000422797 TNFRSF25Q93038 417 aa12.42□□□□□ -0.42
LIMS1-207ENST00000422797 CUEDC2Q9H467 287 aa12.42□□□□□ -0.42
LIMS1-207ENST00000422797 THAP9Q9H5L6 903 aa12.42□□□□□ -0.42
LIMS1-207ENST00000422797 PDE11AQ9HCR9 933 aa12.42□□□□□ -0.42
LIMS1-207ENST00000422797 ZNHIT6Q9NWK9 470 aaKnown RBP12.42□□□□□ -0.42
LIMS1-207ENST00000422797 PUF60Q9UHX1 559 aaKnown RBP12.42□□□□□ -0.42
LIMS1-207ENST00000422797 IPO7O95373 1038 aaKnown RBP12.41□□□□□ -0.42
LIMS1-207ENST00000422797 CYP19A1P11511 503 aaPredicted RBP12.41□□□□□ -0.42
LIMS1-207ENST00000422797 GPTP24298 496 aa12.41□□□□□ -0.42
LIMS1-207ENST00000422797 CYLC1P35663 651 aaPredicted RBP12.41□□□□□ -0.42
LIMS1-207ENST00000422797 IGHMBP2P38935 993 aaKnown RBP12.41□□□□□ -0.42
LIMS1-207ENST00000422797 ARHGAP25P42331 645 aa12.41□□□□□ -0.42
LIMS1-207ENST00000422797 FXR1P51114 621 aaKnown RBP eCLIP12.41□□□□□ -0.42
LIMS1-207ENST00000422797 CASP8Q14790 479 aa12.41□□□□□ -0.42
LIMS1-207ENST00000422797 PKN1Q16512 942 aa12.41□□□□□ -0.42
LIMS1-207ENST00000422797 WWC2Q6AWC2 1192 aa12.41□□□□□ -0.42
LIMS1-207ENST00000422797 PDXDC2PQ6P474 469 aa12.41□□□□□ -0.42
LIMS1-207ENST00000422797 TMTC3Q6ZXV5 915 aa12.41□□□□□ -0.42
LIMS1-207ENST00000422797 TRAPPC11Q7Z392 1133 aa12.41□□□□□ -0.42
LIMS1-207ENST00000422797 FAM114A1Q8IWE2 563 aa12.41□□□□□ -0.42
LIMS1-207ENST00000422797 CCDC170Q8IYT3 715 aa12.41□□□□□ -0.42
LIMS1-207ENST00000422797 CCDC47Q96A33 483 aaKnown RBP12.41□□□□□ -0.42
LIMS1-207ENST00000422797 DNAJC7Q99615 494 aa12.41□□□□□ -0.42
LIMS1-207ENST00000422797 TSGA10Q9BZW7 698 aa12.41□□□□□ -0.42
LIMS1-207ENST00000422797 ABCB6Q9NP58 842 aa12.41□□□□□ -0.42
LIMS1-207ENST00000422797 SH3GLB2Q9NR46 395 aa12.41□□□□□ -0.42
LIMS1-207ENST00000422797 VPS18Q9P253 973 aa12.41□□□□□ -0.42
LIMS1-207ENST00000422797 LRP2BPQ9P2M1 347 aa12.41□□□□□ -0.42
LIMS1-207ENST00000422797 FEZ2Q9UHY8 353 aaPredicted RBP12.41□□□□□ -0.42
LIMS1-207ENST00000422797 ABCA3Q99758 1704 aa12.4□□□□□ -0.42
LIMS1-207ENST00000422797 LAMB2P55268 1798 aa12.4□□□□□ -0.42
LIMS1-207ENST00000422797 MAGEB6P1A0A0J9YX57 407 aa12.4□□□□□ -0.42
LIMS1-207ENST00000422797 LGALS16A8MUM7 142 aa12.4□□□□□ -0.42
LIMS1-207ENST00000422797 KRT86O43790 486 aa12.4□□□□□ -0.42
LIMS1-207ENST00000422797 NDUFA10O95299 355 aa12.4□□□□□ -0.42
LIMS1-207ENST00000422797 RPN1P04843 607 aaKnown RBP12.4□□□□□ -0.42
LIMS1-207ENST00000422797 CAPN2P17655 700 aa12.4□□□□□ -0.42
LIMS1-207ENST00000422797 ATP2B1P20020 1258 aa12.4□□□□□ -0.42
LIMS1-207ENST00000422797 KRT9P35527 623 aa12.4□□□□□ -0.42
LIMS1-207ENST00000422797 STX17P56962 302 aa12.4□□□□□ -0.42
LIMS1-207ENST00000422797 MCM6Q14566 821 aa12.4□□□□□ -0.42
LIMS1-207ENST00000422797 HLFQ16534 295 aa12.4□□□□□ -0.42
LIMS1-207ENST00000422797 USP49Q70CQ1 688 aa12.4□□□□□ -0.42
LIMS1-207ENST00000422797 PIP4P2Q8N4L2 257 aa12.4□□□□□ -0.42
LIMS1-207ENST00000422797 CPLX3Q8WVH0 158 aa12.4□□□□□ -0.42
LIMS1-207ENST00000422797 NELFBQ8WX92 580 aa12.4□□□□□ -0.42
LIMS1-207ENST00000422797 EPSTI1Q96J88 318 aa12.4□□□□□ -0.42
LIMS1-207ENST00000422797 PNKPQ96T60 521 aa12.4□□□□□ -0.42
LIMS1-207ENST00000422797 EPC1Q9H2F5 836 aa12.4□□□□□ -0.42
LIMS1-207ENST00000422797 EFCC1Q9HA90 598 aa12.4□□□□□ -0.42
LIMS1-207ENST00000422797 VPS54Q9P1Q0 977 aa12.4□□□□□ -0.42
LIMS1-207ENST00000422797 MAGEC2Q9UBF1 373 aaPredicted RBP12.4□□□□□ -0.42
LIMS1-207ENST00000422797 LUC7L2Q9Y383 392 aaKnown RBP12.4□□□□□ -0.42
LIMS1-207ENST00000422797 TACC3Q9Y6A5 838 aa12.4□□□□□ -0.42
LIMS1-207ENST00000422797 EPN1Q9Y6I3 576 aaPredicted RBP12.4□□□□□ -0.42
LIMS1-207ENST00000422797 XDHP47989 1333 aa12.4□□□□□ -0.42
LIMS1-207ENST00000422797 BCL9O00512 1426 aa12.4□□□□□ -0.43
LIMS1-207ENST00000422797 MYH6P13533 1939 aa12.39□□□□□ -0.43
LIMS1-207ENST00000422797 NHSL1Q5SYE7 1610 aa12.39□□□□□ -0.43
LIMS1-207ENST00000422797 A0A087X0B3 334 aa12.39□□□□□ -0.43
LIMS1-207ENST00000422797 A6NNZ2 444 aa12.39□□□□□ -0.43
LIMS1-207ENST00000422797 LAD1O00515 517 aa12.39□□□□□ -0.43
LIMS1-207ENST00000422797 ORC4O43929 436 aa12.39□□□□□ -0.43
LIMS1-207ENST00000422797 CYP7A1P22680 504 aa12.39□□□□□ -0.43
LIMS1-207ENST00000422797 KIF5BP33176 963 aa12.39□□□□□ -0.43
LIMS1-207ENST00000422797 DNM2P50570 870 aa12.39□□□□□ -0.43
LIMS1-207ENST00000422797 USP14P54578 494 aa12.39□□□□□ -0.43
LIMS1-207ENST00000422797 ERVK-24P63145 666 aa12.39□□□□□ -0.43
LIMS1-207ENST00000422797 TUBB8Q3ZCM7 444 aa12.39□□□□□ -0.43
LIMS1-207ENST00000422797 CCDC178Q5BJE1 867 aa12.39□□□□□ -0.43
LIMS1-207ENST00000422797 PAPD7Q5XG87 772 aaKnown RBP12.39□□□□□ -0.43
LIMS1-207ENST00000422797 GALNT17Q6IS24 598 aa12.39□□□□□ -0.43
LIMS1-207ENST00000422797 SRLQ86TD4 932 aa12.39□□□□□ -0.43
LIMS1-207ENST00000422797 ENAHQ8N8S7 591 aaPredicted RBP12.39□□□□□ -0.43
LIMS1-207ENST00000422797 PIGBQ92521 554 aa12.39□□□□□ -0.43
LIMS1-207ENST00000422797 SEC31BQ9NQW1 1179 aa12.39□□□□□ -0.43
LIMS1-207ENST00000422797 CAPN11Q9UMQ6 739 aa12.39□□□□□ -0.43
LIMS1-207ENST00000422797 SOS2Q07890 1332 aaPredicted RBP12.39□□□□□ -0.43
LIMS1-207ENST00000422797 PDS5AQ29RF7 1337 aaKnown RBP12.39□□□□□ -0.43
LIMS1-207ENST00000422797 UBE2Q2LH0YL09 131 aa12.38□□□□□ -0.43
LIMS1-207ENST00000422797 PSMA7O14818 248 aa12.38□□□□□ -0.43
LIMS1-207ENST00000422797 CLSTN1O94985 981 aa12.38□□□□□ -0.43
LIMS1-207ENST00000422797 VSNL1P62760 191 aa12.38□□□□□ -0.43
LIMS1-207ENST00000422797 CDK17Q00537 523 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms