RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 HYOU1Q9Y4L1 999 aa12.74□□□□□ -0.37
VPS39-201ENST00000318006 RGS12O14924 1447 aa12.74□□□□□ -0.37
VPS39-201ENST00000318006 CEP152O94986 1710 aa12.73□□□□□ -0.37
VPS39-201ENST00000318006 LRRD1A4D1F6 860 aa12.73□□□□□ -0.37
VPS39-201ENST00000318006 MYO1CO00159 1063 aa12.73□□□□□ -0.37
VPS39-201ENST00000318006 RGS16O15492 202 aaPredicted RBP12.73□□□□□ -0.37
VPS39-201ENST00000318006 SPOPO43791 374 aa12.73□□□□□ -0.37
VPS39-201ENST00000318006 PDE6AP16499 860 aa12.73□□□□□ -0.37
VPS39-201ENST00000318006 GUCY2FP51841 1108 aa12.73□□□□□ -0.37
VPS39-201ENST00000318006 RBM6P78332 1123 aaKnown RBP12.73□□□□□ -0.37
VPS39-201ENST00000318006 HHATQ5VTY9 493 aa12.73□□□□□ -0.37
VPS39-201ENST00000318006 MCTP2Q6DN12 878 aa12.73□□□□□ -0.37
VPS39-201ENST00000318006 UNC5CLQ8IV45 518 aa12.73□□□□□ -0.37
VPS39-201ENST00000318006 LSG1Q9H089 658 aaKnown RBP12.73□□□□□ -0.37
VPS39-201ENST00000318006 KLHL14Q9P2G3 628 aa12.73□□□□□ -0.37
VPS39-201ENST00000318006 DBNLQ9UJU6 430 aaKnown RBP12.73□□□□□ -0.37
VPS39-201ENST00000318006 CLTAP09496 248 aa12.73□□□□□ -0.37
VPS39-201ENST00000318006 INF2Q27J81 1249 aa12.73□□□□□ -0.37
VPS39-201ENST00000318006 STAG1Q8WVM7 1258 aa12.73□□□□□ -0.37
VPS39-201ENST00000318006 CCDC97Q96F63 343 aaPredicted RBP12.73□□□□□ -0.37
VPS39-201ENST00000318006 HOMER3Q9NSC5 361 aa12.73□□□□□ -0.37
VPS39-201ENST00000318006 RFC1P35251 1148 aaPredicted RBP12.73□□□□□ -0.37
VPS39-201ENST00000318006 SF3A3Q12874 501 aaKnown RBP eCLIP12.73□□□□□ -0.37
VPS39-201ENST00000318006 E2F4Q16254 413 aa12.73□□□□□ -0.37
VPS39-201ENST00000318006 CCDC84Q86UT8 332 aaPredicted RBP12.73□□□□□ -0.37
VPS39-201ENST00000318006 MAP4K1Q92918 833 aa12.73□□□□□ -0.37
VPS39-201ENST00000318006 RAB17Q9H0T7 212 aa12.73□□□□□ -0.37
VPS39-201ENST00000318006 GPR108Q9NPR9 543 aa12.73□□□□□ -0.37
VPS39-201ENST00000318006 TXNDC16Q9P2K2 825 aa12.73□□□□□ -0.37
VPS39-201ENST00000318006 PFKFB2O60825 505 aa12.73□□□□□ -0.37
VPS39-201ENST00000318006 ERCC5P28715 1186 aaPredicted RBP12.73□□□□□ -0.37
VPS39-201ENST00000318006 PPARAQ07869 468 aa12.73□□□□□ -0.37
VPS39-201ENST00000318006 PNOCQ13519 176 aa12.73□□□□□ -0.37
VPS39-201ENST00000318006 FBXO38Q6PIJ6 1188 aa12.73□□□□□ -0.37
VPS39-201ENST00000318006 SEPT14Q6ZU15 432 aa12.73□□□□□ -0.37
VPS39-201ENST00000318006 SIRT2Q8IXJ6 389 aa12.73□□□□□ -0.37
VPS39-201ENST00000318006 CCDC65Q8IXS2 484 aa12.73□□□□□ -0.37
VPS39-201ENST00000318006 CHAMP1Q96JM3 812 aa12.73□□□□□ -0.37
VPS39-201ENST00000318006 TCP1P17987 556 aaKnown RBP12.72□□□□□ -0.37
VPS39-201ENST00000318006 DCAF17Q5H9S7 520 aaPredicted RBP12.72□□□□□ -0.37
VPS39-201ENST00000318006 MYSM1Q5VVJ2 828 aa12.72□□□□□ -0.37
VPS39-201ENST00000318006 SYCE1Q8N0S2 351 aa12.72□□□□□ -0.37
VPS39-201ENST00000318006 TRIM4Q9C037 500 aa12.72□□□□□ -0.37
VPS39-201ENST00000318006 KCNJ14Q9UNX9 436 aa12.72□□□□□ -0.37
VPS39-201ENST00000318006 PFKFB1P16118 471 aa12.72□□□□□ -0.37
VPS39-201ENST00000318006 TNFAIP3P21580 790 aa12.72□□□□□ -0.37
VPS39-201ENST00000318006 MAGEA9P43362 315 aa12.72□□□□□ -0.37
VPS39-201ENST00000318006 RBM26Q5T8P6 1007 aaKnown RBP12.72□□□□□ -0.37
VPS39-201ENST00000318006 SH2D4AQ9H788 454 aa12.72□□□□□ -0.37
VPS39-201ENST00000318006 TXNDC9O14530 226 aa12.72□□□□□ -0.37
VPS39-201ENST00000318006 EIF6P56537 245 aaKnown RBP12.72□□□□□ -0.37
VPS39-201ENST00000318006 ANKRD20A3Q5VUR7 823 aa12.72□□□□□ -0.37
VPS39-201ENST00000318006 DPP8Q6V1X1 898 aaPredicted RBP12.72□□□□□ -0.37
VPS39-201ENST00000318006 IFNL3Q8IZI9 196 aa12.72□□□□□ -0.37
VPS39-201ENST00000318006 NELFBQ8WX92 580 aa12.72□□□□□ -0.37
VPS39-201ENST00000318006 FRMD3A2A2Y4 597 aa12.72□□□□□ -0.37
VPS39-201ENST00000318006 PRAMEF22A3QJZ6 481 aa12.72□□□□□ -0.37
VPS39-201ENST00000318006 FGAP02671 866 aa12.72□□□□□ -0.37
VPS39-201ENST00000318006 PNMA6AP0CW24 399 aaPredicted RBP12.72□□□□□ -0.37
VPS39-201ENST00000318006 STX2P32856 288 aa12.72□□□□□ -0.37
VPS39-201ENST00000318006 PPP2R5AQ15172 486 aa12.72□□□□□ -0.37
VPS39-201ENST00000318006 TBC1D22AQ8WUA7 517 aa12.72□□□□□ -0.37
VPS39-201ENST00000318006 USP28Q96RU2 1077 aa12.72□□□□□ -0.37
VPS39-201ENST00000318006 GLT8D2Q9H1C3 349 aa12.72□□□□□ -0.37
VPS39-201ENST00000318006 NUCKS1Q9H1E3 243 aaKnown RBP12.72□□□□□ -0.37
VPS39-201ENST00000318006 CIAO1O76071 339 aa12.71□□□□□ -0.37
VPS39-201ENST00000318006 TFAP4Q01664 338 aa12.71□□□□□ -0.37
VPS39-201ENST00000318006 UAP1Q16222 522 aaPredicted RBP12.71□□□□□ -0.37
VPS39-201ENST00000318006 MMS22LQ6ZRQ5 1243 aa12.71□□□□□ -0.37
VPS39-201ENST00000318006 ANKARQ7Z5J8 1434 aa12.71□□□□□ -0.37
VPS39-201ENST00000318006 SDCCAG8Q86SQ7 713 aaPredicted RBP12.71□□□□□ -0.37
VPS39-201ENST00000318006 RASEFQ8IZ41 740 aa12.71□□□□□ -0.37
VPS39-201ENST00000318006 ZNF654Q8IZM8 581 aa12.71□□□□□ -0.37
VPS39-201ENST00000318006 LZTS2Q9BRK4 669 aa12.71□□□□□ -0.37
VPS39-201ENST00000318006 PARP2Q9UGN5 583 aa12.71□□□□□ -0.37
VPS39-201ENST00000318006 USP21Q9UK80 565 aa12.71□□□□□ -0.37
VPS39-201ENST00000318006 ASAP1Q9ULH1 1129 aa12.71□□□□□ -0.37
VPS39-201ENST00000318006 WDR17Q8IZU2 1322 aa12.71□□□□□ -0.37
VPS39-201ENST00000318006 NCBP1Q09161 790 aaKnown RBP12.71□□□□□ -0.37
VPS39-201ENST00000318006 MAPKAPK5Q8IW41 473 aa12.71□□□□□ -0.37
VPS39-201ENST00000318006 GREM2Q9H772 168 aa12.71□□□□□ -0.37
VPS39-201ENST00000318006 ASIC3Q9UHC3 531 aa12.71□□□□□ -0.37
VPS39-201ENST00000318006 USP17L12C9JPN9 530 aa12.71□□□□□ -0.38
VPS39-201ENST00000318006 USP17L21D6R901 530 aa12.71□□□□□ -0.38
VPS39-201ENST00000318006 PDE8BO95263 885 aa12.71□□□□□ -0.38
VPS39-201ENST00000318006 IFT88Q13099 833 aa12.71□□□□□ -0.38
VPS39-201ENST00000318006 NONOQ15233 471 aaKnown RBP eCLIP12.71□□□□□ -0.38
VPS39-201ENST00000318006 GBP7Q8N8V2 638 aaPredicted RBP12.71□□□□□ -0.38
VPS39-201ENST00000318006 JPH2Q9BR39 696 aaPredicted RBP12.71□□□□□ -0.38
VPS39-201ENST00000318006 ARPP21Q9UBL0 812 aaPredicted RBP12.71□□□□□ -0.38
VPS39-201ENST00000318006 MADDQ8WXG6 1647 aa12.71□□□□□ -0.38
VPS39-201ENST00000318006 CPSF1Q10570 1443 aaKnown RBP12.71□□□□□ -0.38
VPS39-201ENST00000318006 CCNT1O60563 726 aaKnown RBP12.71□□□□□ -0.38
VPS39-201ENST00000318006 RPSAP08865 295 aaKnown RBP12.71□□□□□ -0.38
VPS39-201ENST00000318006 KRT25Q7Z3Z0 450 aa12.71□□□□□ -0.38
VPS39-201ENST00000318006 PEX26Q7Z412 305 aa12.71□□□□□ -0.38
VPS39-201ENST00000318006 FBXO18Q8NFZ0 1043 aa12.71□□□□□ -0.38
VPS39-201ENST00000318006 TLR7Q9NYK1 1049 aaKnown RBP12.71□□□□□ -0.38
VPS39-201ENST00000318006 USH1CQ9Y6N9 552 aa12.71□□□□□ -0.38
VPS39-201ENST00000318006 POLD1P28340 1107 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms