RNA–Protein interactions for RNA: ENST00000303354.10

SCN9A-201, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 9,786 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-201ENST00000303354 PLEKHG3A1L390 1219 aa8.65□□□□□ -1.02
SCN9A-201ENST00000303354 CLIC2O15247 247 aa8.65□□□□□ -1.02
SCN9A-201ENST00000303354 PTH1RQ03431 593 aa8.65□□□□□ -1.02
SCN9A-201ENST00000303354 ANO1Q5XXA6 986 aa8.65□□□□□ -1.02
SCN9A-201ENST00000303354 DCAF15Q66K64 600 aa8.65□□□□□ -1.02
SCN9A-201ENST00000303354 LMBR1Q8WVP7 490 aa8.65□□□□□ -1.02
SCN9A-201ENST00000303354 KCNH3Q9ULD8 1083 aa8.65□□□□□ -1.02
SCN9A-201ENST00000303354 SPDYE2BA6NHP3 402 aa8.65□□□□□ -1.02
SCN9A-201ENST00000303354 ATP2A1O14983 1001 aa8.65□□□□□ -1.02
SCN9A-201ENST00000303354 SPDYE6P0CI01 402 aa8.65□□□□□ -1.02
SCN9A-201ENST00000303354 SCARA5Q6ZMJ2 495 aa8.65□□□□□ -1.02
SCN9A-201ENST00000303354 POLR3AO14802 1390 aaPredicted RBP8.65□□□□□ -1.02
SCN9A-201ENST00000303354 ASXL1Q8IXJ9 1541 aa8.65□□□□□ -1.02
SCN9A-201ENST00000303354 NEMFO60524 1076 aa8.65□□□□□ -1.02
SCN9A-201ENST00000303354 MCM3P25205 808 aa8.65□□□□□ -1.02
SCN9A-201ENST00000303354 HDAC1Q13547 482 aaPredicted RBP8.65□□□□□ -1.02
SCN9A-201ENST00000303354 GDAP1L1Q96MZ0 367 aa8.65□□□□□ -1.02
SCN9A-201ENST00000303354 RSPH14Q9UHP6 348 aa8.65□□□□□ -1.02
SCN9A-201ENST00000303354 EPSTI1Q96J88 318 aa8.65□□□□□ -1.03
SCN9A-201ENST00000303354 CHAMP1Q96JM3 812 aa8.65□□□□□ -1.03
SCN9A-201ENST00000303354 MTRQ99707 1265 aa8.65□□□□□ -1.03
SCN9A-201ENST00000303354 GADD45BO75293 160 aaPredicted RBP8.65□□□□□ -1.03
SCN9A-201ENST00000303354 USP17L2Q6R6M4 530 aa8.65□□□□□ -1.03
SCN9A-201ENST00000303354 C17orf53Q8N3J3 647 aaPredicted RBP8.65□□□□□ -1.03
SCN9A-201ENST00000303354 ZBTB38Q8NAP3 1195 aaPredicted RBP8.65□□□□□ -1.03
SCN9A-201ENST00000303354 U2AF1L4Q8WU68 220 aaKnown RBP8.65□□□□□ -1.03
SCN9A-201ENST00000303354 ZSCAN10Q96SZ4 725 aaPredicted RBP8.65□□□□□ -1.03
SCN9A-201ENST00000303354 PANK4Q9NVE7 773 aa8.65□□□□□ -1.03
SCN9A-201ENST00000303354 CETN3O15182 167 aa8.65□□□□□ -1.03
SCN9A-201ENST00000303354 KCNQ2O43526 872 aa8.65□□□□□ -1.03
SCN9A-201ENST00000303354 NAA25Q14CX7 972 aa8.65□□□□□ -1.03
SCN9A-201ENST00000303354 ZNF710Q8N1W2 664 aa8.65□□□□□ -1.03
SCN9A-201ENST00000303354 TRIM35Q9UPQ4 493 aa8.65□□□□□ -1.03
SCN9A-201ENST00000303354 SSTR3P32745 418 aaPredicted RBP8.64□□□□□ -1.03
SCN9A-201ENST00000303354 PLCD1P51178 756 aa8.64□□□□□ -1.03
SCN9A-201ENST00000303354 SATB1Q01826 763 aa8.64□□□□□ -1.03
SCN9A-201ENST00000303354 LIN9Q5TKA1 542 aa8.64□□□□□ -1.03
SCN9A-201ENST00000303354 KRT40Q6A162 431 aa8.64□□□□□ -1.03
SCN9A-201ENST00000303354 PCDHA12Q9UN75 941 aa8.64□□□□□ -1.03
SCN9A-201ENST00000303354 WDR62O43379 1518 aa8.64□□□□□ -1.03
SCN9A-201ENST00000303354 ZSCAN20P17040 1043 aaPredicted RBP8.64□□□□□ -1.03
SCN9A-201ENST00000303354 PSMD2Q13200 908 aa8.64□□□□□ -1.03
SCN9A-201ENST00000303354 ZNF827Q17R98 1081 aa8.64□□□□□ -1.03
SCN9A-201ENST00000303354 CNNM4Q6P4Q7 775 aa8.64□□□□□ -1.03
SCN9A-201ENST00000303354 RMDN2Q96LZ7 410 aa8.64□□□□□ -1.03
SCN9A-201ENST00000303354 TEKT3Q9BXF9 490 aa8.64□□□□□ -1.03
SCN9A-201ENST00000303354 USP26Q9BXU7 913 aa8.64□□□□□ -1.03
SCN9A-201ENST00000303354 VPS18Q9P253 973 aa8.64□□□□□ -1.03
SCN9A-201ENST00000303354 F5H423 210 aaPredicted RBP8.64□□□□□ -1.03
SCN9A-201ENST00000303354 CIAPIN1Q6FI81 312 aa8.64□□□□□ -1.03
SCN9A-201ENST00000303354 CCDC125Q86Z20 511 aa8.64□□□□□ -1.03
SCN9A-201ENST00000303354 HACE1Q8IYU2 909 aa8.64□□□□□ -1.03
SCN9A-201ENST00000303354 BBXQ8WY36 941 aaPredicted RBP8.64□□□□□ -1.03
SCN9A-201ENST00000303354 TRIM7Q9C029 511 aa8.64□□□□□ -1.03
SCN9A-201ENST00000303354 SYNDIG1Q9H7V2 258 aa8.64□□□□□ -1.03
SCN9A-201ENST00000303354 RAVER2Q9HCJ3 691 aaKnown RBP8.64□□□□□ -1.03
SCN9A-201ENST00000303354 UPP2O95045 317 aa8.64□□□□□ -1.03
SCN9A-201ENST00000303354 SLC12A1Q13621 1099 aa8.64□□□□□ -1.03
SCN9A-201ENST00000303354 C2orf69Q8N8R5 385 aa8.64□□□□□ -1.03
SCN9A-201ENST00000303354 IGSF22Q8N9C0 903 aa8.64□□□□□ -1.03
SCN9A-201ENST00000303354 PNMA1Q8ND90 353 aa8.64□□□□□ -1.03
SCN9A-201ENST00000303354 GOLGA8IPA6NC78 632 aa8.64□□□□□ -1.03
SCN9A-201ENST00000303354 GOLGA8JA6NMD2 632 aa8.64□□□□□ -1.03
SCN9A-201ENST00000303354 VIMP08670 466 aaKnown RBP8.64□□□□□ -1.03
SCN9A-201ENST00000303354 TMOD1P28289 359 aa8.64□□□□□ -1.03
SCN9A-201ENST00000303354 DAAM2Q86T65 1068 aa8.64□□□□□ -1.03
SCN9A-201ENST00000303354 ZNF654Q8IZM8 581 aa8.64□□□□□ -1.03
SCN9A-201ENST00000303354 CPVLQ9H3G5 476 aa8.64□□□□□ -1.03
SCN9A-201ENST00000303354 TBC1D8O95759 1140 aa8.64□□□□□ -1.03
SCN9A-201ENST00000303354 TNNC2P02585 160 aa8.64□□□□□ -1.03
SCN9A-201ENST00000303354 PIK3CAP42336 1068 aa8.64□□□□□ -1.03
SCN9A-201ENST00000303354 KRT83P78385 493 aa8.64□□□□□ -1.03
SCN9A-201ENST00000303354 UNC5CLQ8IV45 518 aa8.64□□□□□ -1.03
SCN9A-201ENST00000303354 OTUD5Q96G74 571 aa8.64□□□□□ -1.03
SCN9A-201ENST00000303354 TMEM87BQ96K49 555 aa8.64□□□□□ -1.03
SCN9A-201ENST00000303354 ZNF577Q9BSK1 485 aa8.64□□□□□ -1.03
SCN9A-201ENST00000303354 KRT86O43790 486 aa8.64□□□□□ -1.03
SCN9A-201ENST00000303354 CEP104O60308 925 aa8.64□□□□□ -1.03
SCN9A-201ENST00000303354 PABPC4Q13310 644 aaKnown RBP eCLIP8.64□□□□□ -1.03
SCN9A-201ENST00000303354 C6orf163Q5TEZ5 329 aa8.64□□□□□ -1.03
SCN9A-201ENST00000303354 TTBK2Q6IQ55 1244 aa8.64□□□□□ -1.03
SCN9A-201ENST00000303354 ARMCX5Q6P1M9 558 aa8.64□□□□□ -1.03
SCN9A-201ENST00000303354 ZBTB8OSQ8IWT0 167 aa8.64□□□□□ -1.03
SCN9A-201ENST00000303354 ZBTB40Q9NUA8 1239 aa8.64□□□□□ -1.03
SCN9A-201ENST00000303354 FIS1Q9Y3D6 152 aa8.64□□□□□ -1.03
SCN9A-201ENST00000303354 USP17L3A6NCW0 530 aa8.63□□□□□ -1.03
SCN9A-201ENST00000303354 USP17L4A6NCW7 530 aa8.63□□□□□ -1.03
SCN9A-201ENST00000303354 CCDC14Q49A88 953 aa8.63□□□□□ -1.03
SCN9A-201ENST00000303354 CCDC93Q567U6 631 aa8.63□□□□□ -1.03
SCN9A-201ENST00000303354 RRAGAQ7L523 313 aa8.63□□□□□ -1.03
SCN9A-201ENST00000303354 USP17L1Q7RTZ2 530 aa8.63□□□□□ -1.03
SCN9A-201ENST00000303354 NLRP4Q96MN2 994 aa8.63□□□□□ -1.03
SCN9A-201ENST00000303354 M0R2C6 588 aa8.63□□□□□ -1.03
SCN9A-201ENST00000303354 GNL1P36915 607 aaPredicted RBP8.63□□□□□ -1.03
SCN9A-201ENST00000303354 ANO4Q32M45 955 aa8.63□□□□□ -1.03
SCN9A-201ENST00000303354 SUSD4Q5VX71 490 aa8.63□□□□□ -1.03
SCN9A-201ENST00000303354 NAA35Q5VZE5 725 aa8.63□□□□□ -1.03
SCN9A-201ENST00000303354 POMGNT1Q8WZA1 660 aa8.63□□□□□ -1.03
SCN9A-201ENST00000303354 ADPGKQ9BRR6 497 aa8.63□□□□□ -1.03
SCN9A-201ENST00000303354 ASIC3Q9UHC3 531 aa8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms