RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 ABI1Q8IZP0 508 aa12.49□□□□□ -0.41
PTPN4-201ENST00000263708 ALKBH8Q96BT7 664 aaKnown RBP12.49□□□□□ -0.41
PTPN4-201ENST00000263708 RPS6KC1Q96S38 1066 aa12.49□□□□□ -0.41
PTPN4-201ENST00000263708 DDX41Q9UJV9 622 aaKnown RBP12.49□□□□□ -0.41
PTPN4-201ENST00000263708 CTNNA1P35221 906 aaKnown RBP12.49□□□□□ -0.41
PTPN4-201ENST00000263708 NLRX1Q86UT6 975 aa12.49□□□□□ -0.41
PTPN4-201ENST00000263708 KDRP35968 1356 aa12.48□□□□□ -0.41
PTPN4-201ENST00000263708 GRK7Q8WTQ7 553 aa12.48□□□□□ -0.41
PTPN4-201ENST00000263708 CSRNP1Q96S65 589 aa12.48□□□□□ -0.41
PTPN4-201ENST00000263708 HADHQ16836 314 aaKnown RBP12.48□□□□□ -0.41
PTPN4-201ENST00000263708 ADAT2Q7Z6V5 191 aaKnown RBP12.48□□□□□ -0.41
PTPN4-201ENST00000263708 A6NNZ2 444 aa12.48□□□□□ -0.41
PTPN4-201ENST00000263708 SART1O43290 800 aaKnown RBP12.48□□□□□ -0.41
PTPN4-201ENST00000263708 EVI5O60447 810 aa12.48□□□□□ -0.41
PTPN4-201ENST00000263708 PIK3CAP42336 1068 aa12.48□□□□□ -0.41
PTPN4-201ENST00000263708 LIG4P49917 911 aa12.48□□□□□ -0.41
PTPN4-201ENST00000263708 TUBB8Q3ZCM7 444 aa12.48□□□□□ -0.41
PTPN4-201ENST00000263708 ANKRD20A4Q4UJ75 823 aa12.48□□□□□ -0.41
PTPN4-201ENST00000263708 ANKRD20A8PQ5CZ79 823 aa12.48□□□□□ -0.41
PTPN4-201ENST00000263708 ANKRD20A2Q5SQ80 823 aa12.48□□□□□ -0.41
PTPN4-201ENST00000263708 ANKRD20A1Q5TYW2 823 aa12.48□□□□□ -0.41
PTPN4-201ENST00000263708 U2AF1L4Q8WU68 220 aaKnown RBP12.48□□□□□ -0.41
PTPN4-201ENST00000263708 FRMD3A2A2Y4 597 aa12.48□□□□□ -0.41
PTPN4-201ENST00000263708 FAM186BQ8IYM0 893 aa12.48□□□□□ -0.41
PTPN4-201ENST00000263708 GDAP1L1Q96MZ0 367 aa12.48□□□□□ -0.41
PTPN4-201ENST00000263708 IFT122Q9HBG6 1241 aa12.48□□□□□ -0.41
PTPN4-201ENST00000263708 PRPF38AQ8NAV1 312 aaKnown RBP12.48□□□□□ -0.41
PTPN4-201ENST00000263708 IFIH1Q9BYX4 1025 aaKnown RBP12.48□□□□□ -0.41
PTPN4-201ENST00000263708 DISC1Q9NRI5 854 aa12.48□□□□□ -0.41
PTPN4-201ENST00000263708 MEIS3Q99687 375 aa12.48□□□□□ -0.41
PTPN4-201ENST00000263708 GLT8D2Q9H1C3 349 aa12.48□□□□□ -0.41
PTPN4-201ENST00000263708 ASPHQ12797 758 aa12.48□□□□□ -0.41
PTPN4-201ENST00000263708 DHX32Q7L7V1 743 aaKnown RBP12.48□□□□□ -0.41
PTPN4-201ENST00000263708 CSADQ9Y600 493 aa12.48□□□□□ -0.41
PTPN4-201ENST00000263708 WDR97A6NE52 1622 aa12.48□□□□□ -0.41
PTPN4-201ENST00000263708 H3BRJ5 948 aa12.48□□□□□ -0.41
PTPN4-201ENST00000263708 IGBP1P78318 339 aa12.48□□□□□ -0.41
PTPN4-201ENST00000263708 NONOQ15233 471 aaKnown RBP eCLIP12.48□□□□□ -0.41
PTPN4-201ENST00000263708 TRIM59Q8IWR1 403 aa12.48□□□□□ -0.41
PTPN4-201ENST00000263708 RASEFQ8IZ41 740 aa12.48□□□□□ -0.41
PTPN4-201ENST00000263708 GGA1Q9UJY5 639 aa12.48□□□□□ -0.41
PTPN4-201ENST00000263708 RRAGAQ7L523 313 aa12.47□□□□□ -0.41
PTPN4-201ENST00000263708 DRC3Q9H069 523 aa12.47□□□□□ -0.41
PTPN4-201ENST00000263708 METTL14Q9HCE5 456 aaKnown RBP12.47□□□□□ -0.41
PTPN4-201ENST00000263708 GAS7O60861 476 aa12.47□□□□□ -0.41
PTPN4-201ENST00000263708 DEXIO95424 95 aa12.47□□□□□ -0.41
PTPN4-201ENST00000263708 PDE1AP54750 535 aa12.47□□□□□ -0.41
PTPN4-201ENST00000263708 HIP1RO75146 1068 aa12.47□□□□□ -0.41
PTPN4-201ENST00000263708 SRGAP2BP0DMP2 458 aa12.47□□□□□ -0.41
PTPN4-201ENST00000263708 ADPGKQ9BRR6 497 aa12.47□□□□□ -0.41
PTPN4-201ENST00000263708 ARMT1Q9H993 441 aa12.47□□□□□ -0.41
PTPN4-201ENST00000263708 KCNH3Q9ULD8 1083 aa12.47□□□□□ -0.41
PTPN4-201ENST00000263708 ARHGDIAP52565 204 aa12.47□□□□□ -0.41
PTPN4-201ENST00000263708 TAB2Q9NYJ8 693 aa12.47□□□□□ -0.41
PTPN4-201ENST00000263708 ZSCAN32Q9NX65 697 aa12.47□□□□□ -0.41
PTPN4-201ENST00000263708 GOLGA8QA0A0J9YX86 632 aa12.47□□□□□ -0.41
PTPN4-201ENST00000263708 GOLGA8OA6NCC3 632 aa12.47□□□□□ -0.41
PTPN4-201ENST00000263708 GOLGA8NF8WBI6 632 aa12.47□□□□□ -0.41
PTPN4-201ENST00000263708 TRMT10CQ7L0Y3 403 aaKnown RBP12.47□□□□□ -0.41
PTPN4-201ENST00000263708 ZNF653Q96CK0 615 aa12.47□□□□□ -0.41
PTPN4-201ENST00000263708 STK32BQ9NY57 414 aa12.47□□□□□ -0.41
PTPN4-201ENST00000263708 RTEL1Q9NZ71 1219 aa12.47□□□□□ -0.41
PTPN4-201ENST00000263708 TSKSQ9UJT2 592 aa12.47□□□□□ -0.41
PTPN4-201ENST00000263708 SUGT1Q9Y2Z0 365 aa12.47□□□□□ -0.41
PTPN4-201ENST00000263708 ZBTB8OSQ8IWT0 167 aa12.47□□□□□ -0.41
PTPN4-201ENST00000263708 TBC1D32Q96NH3 1257 aa12.47□□□□□ -0.41
PTPN4-201ENST00000263708 POLR3CQ9BUI4 534 aaPredicted RBP12.47□□□□□ -0.41
PTPN4-201ENST00000263708 GTPBP10A4D1E9 387 aaKnown RBP12.46□□□□□ -0.41
PTPN4-201ENST00000263708 DLATP10515 647 aaKnown RBP12.46□□□□□ -0.41
PTPN4-201ENST00000263708 PEX19P40855 299 aa12.46□□□□□ -0.41
PTPN4-201ENST00000263708 Q3C1V9 767 aa12.46□□□□□ -0.41
PTPN4-201ENST00000263708 H0YIN7 160 aa12.46□□□□□ -0.41
PTPN4-201ENST00000263708 TUBB2AQ13885 445 aa12.46□□□□□ -0.41
PTPN4-201ENST00000263708 CWF19L2Q2TBE0 894 aaKnown RBP12.46□□□□□ -0.41
PTPN4-201ENST00000263708 TUBB2BQ9BVA1 445 aa12.46□□□□□ -0.41
PTPN4-201ENST00000263708 THEGQ9P2T0 379 aa12.46□□□□□ -0.41
PTPN4-201ENST00000263708 ZKSCAN5Q9Y2L8 839 aa12.46□□□□□ -0.41
PTPN4-201ENST00000263708 PTPN22Q9Y2R2 807 aa12.46□□□□□ -0.41
PTPN4-201ENST00000263708 PCDHB13Q9Y5F0 798 aa12.46□□□□□ -0.41
PTPN4-201ENST00000263708 SYNDIG1LA6NDD5 238 aa12.46□□□□□ -0.41
PTPN4-201ENST00000263708 KRIT1O00522 736 aa12.46□□□□□ -0.41
PTPN4-201ENST00000263708 POLR2BP30876 1174 aaKnown RBP12.46□□□□□ -0.41
PTPN4-201ENST00000263708 PDE6CP51160 858 aa12.46□□□□□ -0.41
PTPN4-201ENST00000263708 FAM207AQ9NSI2 230 aaPredicted RBP12.46□□□□□ -0.41
PTPN4-201ENST00000263708 CC2D2AQ9P2K1 1620 aa12.46□□□□□ -0.41
PTPN4-201ENST00000263708 TOM1O60784 492 aa12.46□□□□□ -0.41
PTPN4-201ENST00000263708 GPC4O75487 556 aa12.46□□□□□ -0.41
PTPN4-201ENST00000263708 EEF1DP29692 281 aaKnown RBP12.46□□□□□ -0.41
PTPN4-201ENST00000263708 STX1BP61266 288 aa12.46□□□□□ -0.41
PTPN4-201ENST00000263708 TTC38Q5R3I4 469 aa12.46□□□□□ -0.41
PTPN4-201ENST00000263708 BICC1Q9H694 974 aaKnown RBP12.46□□□□□ -0.41
PTPN4-201ENST00000263708 RNASELQ05823 741 aaKnown RBP12.46□□□□□ -0.41
PTPN4-201ENST00000263708 HACD3Q9P035 362 aa12.46□□□□□ -0.41
PTPN4-201ENST00000263708 FAM180AQ6UWF9 173 aa12.46□□□□□ -0.42
PTPN4-201ENST00000263708 C2CD5Q86YS7 1000 aa12.46□□□□□ -0.42
PTPN4-201ENST00000263708 NIM1KQ8IY84 436 aa12.46□□□□□ -0.42
PTPN4-201ENST00000263708 RBM46Q8TBY0 533 aaKnown RBP12.46□□□□□ -0.42
PTPN4-201ENST00000263708 LRFN2Q9ULH4 789 aa12.46□□□□□ -0.42
PTPN4-201ENST00000263708 H7C0C1 242 aa12.46□□□□□ -0.42
PTPN4-201ENST00000263708 ATP5OP48047 213 aa12.46□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms