RNA–Protein interactions for RNA: ENST00000592790.1

VMP1-216, Transcript of vacuole membrane protein 1, human

Gene VMP1, Length 4,325 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VMP1-216	ENST00000592790	PTPRE	P23469	700 aa		3.95	□□□□□ -1.78
VMP1-216	ENST00000592790	EPHB4	P54760	987 aa		3.95	□□□□□ -1.78
VMP1-216	ENST00000592790	TBC1D8B	Q0IIM8	1120 aa		3.95	□□□□□ -1.78
VMP1-216	ENST00000592790	MORC3	Q14149	939 aa		3.95	□□□□□ -1.78
VMP1-216	ENST00000592790	KCNJ12	Q14500	433 aa		3.95	□□□□□ -1.78
VMP1-216	ENST00000592790	CCDC40	Q4G0X9	1142 aa		3.95	□□□□□ -1.78
VMP1-216	ENST00000592790	STXBP4	Q6ZWJ1	553 aa		3.95	□□□□□ -1.78
VMP1-216	ENST00000592790	CCDC26	Q8TAB7	109 aa		3.95	□□□□□ -1.78
VMP1-216	ENST00000592790	KLHDC4	Q8TBB5	520 aa		3.95	□□□□□ -1.78
VMP1-216	ENST00000592790	NELFB	Q8WX92	580 aa		3.95	□□□□□ -1.78
VMP1-216	ENST00000592790	DGCR8	Q8WYQ5	773 aa	Known RBP eCLIP	3.95	□□□□□ -1.78	4e-30	■■■■■ 492.4
VMP1-216	ENST00000592790	DHTKD1	Q96HY7	919 aa	Predicted RBP	3.95	□□□□□ -1.78
VMP1-216	ENST00000592790	PLVAP	Q9BX97	442 aa		3.95	□□□□□ -1.78
VMP1-216	ENST00000592790	C6orf50	Q9HD87	102 aa		3.95	□□□□□ -1.78
VMP1-216	ENST00000592790	GEMIN8	Q9NWZ8	242 aa	Known RBP	3.95	□□□□□ -1.78
VMP1-216	ENST00000592790	TLR7	Q9NYK1	1049 aa	Known RBP	3.95	□□□□□ -1.78
VMP1-216	ENST00000592790	FAM208A	Q9UK61	1670 aa	Known RBP	3.95	□□□□□ -1.78
VMP1-216	ENST00000592790	WDR17	Q8IZU2	1322 aa		3.95	□□□□□ -1.78
VMP1-216	ENST00000592790	MYO5B	Q9ULV0	1848 aa		3.95	□□□□□ -1.78
VMP1-216	ENST00000592790		A0A1B0GUA9	196 aa		3.95	□□□□□ -1.78
VMP1-216	ENST00000592790	MYO1C	O00159	1063 aa		3.95	□□□□□ -1.78
VMP1-216	ENST00000592790	BAG3	O95817	575 aa		3.95	□□□□□ -1.78
VMP1-216	ENST00000592790	COPB1	P53618	953 aa	Known RBP	3.95	□□□□□ -1.78
VMP1-216	ENST00000592790	TCIRG1	Q13488	830 aa		3.95	□□□□□ -1.78
VMP1-216	ENST00000592790	HLTF	Q14527	1009 aa	Known RBP eCLIP	3.95	□□□□□ -1.78
VMP1-216	ENST00000592790	CASP8	Q14790	479 aa		3.95	□□□□□ -1.78
VMP1-216	ENST00000592790	TMCO4	Q5TGY1	634 aa		3.95	□□□□□ -1.78
VMP1-216	ENST00000592790	ARL6IP4	Q66PJ3	421 aa	Known RBP	3.95	□□□□□ -1.78
VMP1-216	ENST00000592790	EMB	Q6PCB8	327 aa		3.95	□□□□□ -1.78
VMP1-216	ENST00000592790	CEP128	Q6ZU80	1094 aa		3.95	□□□□□ -1.78
VMP1-216	ENST00000592790	RPAIN	Q86UA6	219 aa		3.95	□□□□□ -1.78
VMP1-216	ENST00000592790	ZNF444	Q8N0Y2	327 aa	Predicted RBP	3.95	□□□□□ -1.78
VMP1-216	ENST00000592790	ZNF496	Q96IT1	587 aa	Predicted RBP	3.95	□□□□□ -1.78
VMP1-216	ENST00000592790	CAPS2	Q9BXY5	557 aa		3.95	□□□□□ -1.78
VMP1-216	ENST00000592790	THAP9	Q9H5L6	903 aa		3.95	□□□□□ -1.78
VMP1-216	ENST00000592790	MKNK2	Q9HBH9	465 aa		3.95	□□□□□ -1.78
VMP1-216	ENST00000592790	STRN4	Q9NRL3	753 aa		3.95	□□□□□ -1.78
VMP1-216	ENST00000592790	FMN2	Q9NZ56	1722 aa		3.95	□□□□□ -1.78
VMP1-216	ENST00000592790	ZNF142	P52746	1687 aa	Predicted RBP	3.94	□□□□□ -1.78
VMP1-216	ENST00000592790	TSPY2	A6NKD2	308 aa		3.94	□□□□□ -1.78
VMP1-216	ENST00000592790	USP27X	A6NNY8	438 aa		3.94	□□□□□ -1.78
VMP1-216	ENST00000592790	MBD4	O95243	580 aa		3.94	□□□□□ -1.78
VMP1-216	ENST00000592790	CYP7A1	P22680	504 aa		3.94	□□□□□ -1.78
VMP1-216	ENST00000592790	GBP1	P32455	592 aa		3.94	□□□□□ -1.78
VMP1-216	ENST00000592790	STX17	P56962	302 aa		3.94	□□□□□ -1.78
VMP1-216	ENST00000592790	ASIC1	P78348	528 aa		3.94	□□□□□ -1.78
VMP1-216	ENST00000592790	RAD51AP2	Q09MP3	1159 aa		3.94	□□□□□ -1.78
VMP1-216	ENST00000592790	TRAF1	Q13077	416 aa		3.94	□□□□□ -1.78
VMP1-216	ENST00000592790	PARP10	Q53GL7	1025 aa		3.94	□□□□□ -1.78
VMP1-216	ENST00000592790	ZNF658	Q5TYW1	1059 aa	Predicted RBP	3.94	□□□□□ -1.78
VMP1-216	ENST00000592790	OTUD7B	Q6GQQ9	843 aa		3.94	□□□□□ -1.78
VMP1-216	ENST00000592790	SGMS1	Q86VZ5	419 aa		3.94	□□□□□ -1.78
VMP1-216	ENST00000592790	MB21D2	Q8IYB1	491 aa	Predicted RBP	3.94	□□□□□ -1.78
VMP1-216	ENST00000592790	ZNF654	Q8IZM8	581 aa		3.94	□□□□□ -1.78
VMP1-216	ENST00000592790	CNPY4	Q8N129	248 aa		3.94	□□□□□ -1.78
VMP1-216	ENST00000592790	FANCB	Q8NB91	859 aa		3.94	□□□□□ -1.78
VMP1-216	ENST00000592790	AK8	Q96MA6	479 aa		3.94	□□□□□ -1.78
VMP1-216	ENST00000592790	SEC62	Q99442	399 aa	Known RBP	3.94	□□□□□ -1.78
VMP1-216	ENST00000592790	GLT8D2	Q9H1C3	349 aa		3.94	□□□□□ -1.78
VMP1-216	ENST00000592790	CENPH	Q9H3R5	247 aa		3.94	□□□□□ -1.78
VMP1-216	ENST00000592790	FAM204A	Q9H8W3	233 aa		3.94	□□□□□ -1.78
VMP1-216	ENST00000592790	PLCB1	Q9NQ66	1216 aa		3.94	□□□□□ -1.78
VMP1-216	ENST00000592790	ABCF2	Q9UG63	623 aa		3.94	□□□□□ -1.78
VMP1-216	ENST00000592790	ZNF609	O15014	1411 aa		3.94	□□□□□ -1.78
VMP1-216	ENST00000592790	VWA3A	A6NCI4	1184 aa		3.94	□□□□□ -1.78
VMP1-216	ENST00000592790	KCNQ3	O43525	872 aa		3.94	□□□□□ -1.78
VMP1-216	ENST00000592790	LTK	P29376	864 aa		3.94	□□□□□ -1.78
VMP1-216	ENST00000592790	ATP5D	P30049	168 aa		3.94	□□□□□ -1.78
VMP1-216	ENST00000592790	SLC8A1	P32418	973 aa		3.94	□□□□□ -1.78
VMP1-216	ENST00000592790	ADD2	P35612	726 aa		3.94	□□□□□ -1.78
VMP1-216	ENST00000592790	CCT6A	P40227	531 aa	Known RBP	3.94	□□□□□ -1.78
VMP1-216	ENST00000592790	CETN2	P41208	172 aa		3.94	□□□□□ -1.78
VMP1-216	ENST00000592790	ZAP70	P43403	619 aa		3.94	□□□□□ -1.78
VMP1-216	ENST00000592790	SLC9C1	Q4G0N8	1177 aa		3.94	□□□□□ -1.78
VMP1-216	ENST00000592790	ICE2	Q659A1	982 aa		3.94	□□□□□ -1.78
VMP1-216	ENST00000592790	KRT25	Q7Z3Z0	450 aa		3.94	□□□□□ -1.78
VMP1-216	ENST00000592790	HOOK3	Q86VS8	718 aa		3.94	□□□□□ -1.78
VMP1-216	ENST00000592790	ANKRD18A	Q8IVF6	992 aa		3.94	□□□□□ -1.78
VMP1-216	ENST00000592790	SLC35F6	Q8N357	371 aa		3.94	□□□□□ -1.78
VMP1-216	ENST00000592790	CSGALNACT2	Q8N6G5	542 aa		3.94	□□□□□ -1.78
VMP1-216	ENST00000592790	MAGEB6	Q8N7X4	407 aa		3.94	□□□□□ -1.78
VMP1-216	ENST00000592790	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	3.94	□□□□□ -1.78
VMP1-216	ENST00000592790	ERMN	Q8TAM6	284 aa		3.94	□□□□□ -1.78
VMP1-216	ENST00000592790	ZNF512B	Q96KM6	892 aa	Predicted RBP	3.94	□□□□□ -1.78
VMP1-216	ENST00000592790	NOC4L	Q9BVI4	516 aa	Known RBP	3.94	□□□□□ -1.78
VMP1-216	ENST00000592790	VPS16	Q9H269	839 aa		3.94	□□□□□ -1.78
VMP1-216	ENST00000592790	DENND2A	Q9ULE3	1009 aa		3.94	□□□□□ -1.78
VMP1-216	ENST00000592790	FAM184B	Q9ULE4	1060 aa		3.94	□□□□□ -1.78
VMP1-216	ENST00000592790	JRKL	Q9Y4A0	524 aa		3.94	□□□□□ -1.78
VMP1-216	ENST00000592790	ZNF532	Q9HCE3	1301 aa		3.94	□□□□□ -1.78
VMP1-216	ENST00000592790	JCAD	Q9P266	1359 aa		3.94	□□□□□ -1.78
VMP1-216	ENST00000592790		A0A1W2PQC6	194 aa		3.94	□□□□□ -1.78
VMP1-216	ENST00000592790	TMCO5B	A8MYB1	307 aa		3.94	□□□□□ -1.78
VMP1-216	ENST00000592790	RNF40	O75150	1001 aa		3.94	□□□□□ -1.78
VMP1-216	ENST00000592790	PHACTR2	O75167	634 aa		3.94	□□□□□ -1.78
VMP1-216	ENST00000592790	IGKV5-2	P06315	115 aa		3.94	□□□□□ -1.78
VMP1-216	ENST00000592790	MAP2K1	Q02750	393 aa	Predicted RBP	3.94	□□□□□ -1.78
VMP1-216	ENST00000592790	CETN1	Q12798	172 aa		3.94	□□□□□ -1.78
VMP1-216	ENST00000592790	ORC2	Q13416	577 aa	Predicted RBP	3.94	□□□□□ -1.78
VMP1-216	ENST00000592790	HSP90AA4P	Q58FG1	418 aa		3.94	□□□□□ -1.78

Retrieved 100 of 20,778 RNA–protein pairs in 92.3 ms