RNA–Protein interactions for RNA: ENST00000555773.5

SHMT2-221, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 600 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-221ENST00000555773 RCAN1P53805 252 aa14.59□□□□□ -0.07
SHMT2-221ENST00000555773 AK2P54819 239 aa14.59□□□□□ -0.07
SHMT2-221ENST00000555773 KLRC3Q07444 240 aa14.59□□□□□ -0.07
SHMT2-221ENST00000555773 PPP2R5BQ15173 497 aa14.59□□□□□ -0.07
SHMT2-221ENST00000555773 SH3D19Q5HYK7 790 aa14.59□□□□□ -0.07
SHMT2-221ENST00000555773 USP17L2Q6R6M4 530 aa14.59□□□□□ -0.07
SHMT2-221ENST00000555773 CCDC84Q86UT8 332 aaPredicted RBP14.59□□□□□ -0.07
SHMT2-221ENST00000555773 CLEC10AQ8IUN9 316 aa14.59□□□□□ -0.07
SHMT2-221ENST00000555773 PNMA1Q8ND90 353 aa14.59□□□□□ -0.07
SHMT2-221ENST00000555773 LPAR1Q92633 364 aa14.59□□□□□ -0.07
SHMT2-221ENST00000555773 OTUD5Q96G74 571 aa14.59□□□□□ -0.07
SHMT2-221ENST00000555773 ZNF274Q96GC6 653 aaPredicted RBP14.59□□□□□ -0.07
SHMT2-221ENST00000555773 MAP3K14Q99558 947 aa14.59□□□□□ -0.07
SHMT2-221ENST00000555773 FEZ1Q99689 392 aa14.59□□□□□ -0.07
SHMT2-221ENST00000555773 VCPKMTQ9H867 229 aa14.59□□□□□ -0.07
SHMT2-221ENST00000555773 FRMD4AQ9P2Q2 1039 aaPredicted RBP14.59□□□□□ -0.07
SHMT2-221ENST00000555773 TRIM75PA6NK02 468 aa14.58□□□□□ -0.08
SHMT2-221ENST00000555773 DDAH1O94760 285 aa14.58□□□□□ -0.08
SHMT2-221ENST00000555773 TROAPQ12815 778 aa14.58□□□□□ -0.08
SHMT2-221ENST00000555773 SNAPC2Q13487 334 aa14.58□□□□□ -0.08
SHMT2-221ENST00000555773 SPRYD7Q5W111 196 aa14.58□□□□□ -0.08
SHMT2-221ENST00000555773 CNKSR2Q8WXI2 1034 aa14.58□□□□□ -0.08
SHMT2-221ENST00000555773 CHMP4CQ96CF2 233 aa14.58□□□□□ -0.08
SHMT2-221ENST00000555773 WNK4Q96J92 1243 aa14.58□□□□□ -0.08
SHMT2-221ENST00000555773 ZSCAN31Q96LW9 406 aaPredicted RBP14.58□□□□□ -0.08
SHMT2-221ENST00000555773 SENP2Q9HC62 589 aa14.58□□□□□ -0.08
SHMT2-221ENST00000555773 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.58□□□□□ -0.08
SHMT2-221ENST00000555773 BRPF3Q9ULD4 1205 aa14.58□□□□□ -0.08
SHMT2-221ENST00000555773 LIMCH1Q9UPQ0 1083 aa14.58□□□□□ -0.08
SHMT2-221ENST00000555773 KLF18A0A0U1RQI7 1052 aa14.57□□□□□ -0.08
SHMT2-221ENST00000555773 ZBTB43O43298 467 aa14.57□□□□□ -0.08
SHMT2-221ENST00000555773 GTF2A2P52657 109 aa14.57□□□□□ -0.08
SHMT2-221ENST00000555773 APOBRQ0VD83 1088 aa14.57□□□□□ -0.08
SHMT2-221ENST00000555773 MTMR2Q13614 643 aa14.57□□□□□ -0.08
SHMT2-221ENST00000555773 DEFB115Q30KQ5 88 aa14.57□□□□□ -0.08
SHMT2-221ENST00000555773 SLFN13Q68D06 897 aa14.57□□□□□ -0.08
SHMT2-221ENST00000555773 APOA5Q6Q788 366 aa14.57□□□□□ -0.08
SHMT2-221ENST00000555773 FASTKD5Q7L8L6 764 aaKnown RBP14.57□□□□□ -0.08
SHMT2-221ENST00000555773 ZNF654Q8IZM8 581 aa14.57□□□□□ -0.08
SHMT2-221ENST00000555773 LRRC47Q8N1G4 583 aaKnown RBP14.57□□□□□ -0.08
SHMT2-221ENST00000555773 DCAF4Q8WV16 495 aa14.57□□□□□ -0.08
SHMT2-221ENST00000555773 SNX21Q969T3 373 aa14.57□□□□□ -0.08
SHMT2-221ENST00000555773 GMCL1Q96IK5 515 aa14.57□□□□□ -0.08
SHMT2-221ENST00000555773 C12orf42Q96LP6 360 aa14.57□□□□□ -0.08
SHMT2-221ENST00000555773 EMILIN3Q9NT22 766 aa14.57□□□□□ -0.08
SHMT2-221ENST00000555773 TMOD4Q9NZQ9 345 aa14.57□□□□□ -0.08
SHMT2-221ENST00000555773 A0A0G2JLL6 359 aaPredicted RBP14.56□□□□□ -0.08
SHMT2-221ENST00000555773 RASSF10A6NK89 507 aa14.56□□□□□ -0.08
SHMT2-221ENST00000555773 NDUFB10O96000 172 aa14.56□□□□□ -0.08
SHMT2-221ENST00000555773 SLC10A3P09131 477 aa14.56□□□□□ -0.08
SHMT2-221ENST00000555773 SNHG28P0DPA3 235 aa14.56□□□□□ -0.08
SHMT2-221ENST00000555773 CETPP11597 493 aa14.56□□□□□ -0.08
SHMT2-221ENST00000555773 PDIA3P30101 505 aaKnown RBP14.56□□□□□ -0.08
SHMT2-221ENST00000555773 GJA5P36382 358 aa14.56□□□□□ -0.08
SHMT2-221ENST00000555773 INHBEP58166 350 aa14.56□□□□□ -0.08
SHMT2-221ENST00000555773 PRRT2Q7Z6L0 340 aaPredicted RBP14.56□□□□□ -0.08
SHMT2-221ENST00000555773 FANCBQ8NB91 859 aa14.56□□□□□ -0.08
SHMT2-221ENST00000555773 TPCN1Q9ULQ1 816 aa14.56□□□□□ -0.08
SHMT2-221ENST00000555773 CCDC196A0A1B0GTZ2 297 aa14.55□□□□□ -0.08
SHMT2-221ENST00000555773 RAD21O60216 631 aa14.55□□□□□ -0.08
SHMT2-221ENST00000555773 PDHBP11177 359 aa14.55□□□□□ -0.08
SHMT2-221ENST00000555773 KIF5BP33176 963 aa14.55□□□□□ -0.08
SHMT2-221ENST00000555773 SLC1A4P43007 532 aa14.55□□□□□ -0.08
SHMT2-221ENST00000555773 GNAQP50148 359 aa14.55□□□□□ -0.08
SHMT2-221ENST00000555773 HMGCS2P54868 508 aa14.55□□□□□ -0.08
SHMT2-221ENST00000555773 GPATCH4Q5T3I0 446 aaKnown RBP14.55□□□□□ -0.08
SHMT2-221ENST00000555773 RASAL3Q86YV0 1011 aa14.55□□□□□ -0.08
SHMT2-221ENST00000555773 PROCA1Q8NCQ7 364 aaPredicted RBP14.55□□□□□ -0.08
SHMT2-221ENST00000555773 CTCFLQ8NI51 663 aaPredicted RBP14.55□□□□□ -0.08
SHMT2-221ENST00000555773 NUP133Q8WUM0 1156 aa14.55□□□□□ -0.08
SHMT2-221ENST00000555773 MS4A4AQ96JQ5 239 aa14.55□□□□□ -0.08
SHMT2-221ENST00000555773 SH2B1Q9NRF2 756 aaPredicted RBP14.55□□□□□ -0.08
SHMT2-221ENST00000555773 NAP1L2Q9ULW6 460 aaPredicted RBP14.55□□□□□ -0.08
SHMT2-221ENST00000555773 MANSC4A6NHS7 340 aaPredicted RBP14.54□□□□□ -0.08
SHMT2-221ENST00000555773 WDR46O15213 610 aaKnown RBP14.54□□□□□ -0.08
SHMT2-221ENST00000555773 DHX16O60231 1041 aaKnown RBP14.54□□□□□ -0.08
SHMT2-221ENST00000555773 PFKFB2O60825 505 aa14.54□□□□□ -0.08
SHMT2-221ENST00000555773 PARP1P09874 1014 aaKnown RBP14.54□□□□□ -0.08
SHMT2-221ENST00000555773 BMP3P12645 472 aa14.54□□□□□ -0.08
SHMT2-221ENST00000555773 METAP2P50579 478 aaKnown RBP eCLIP14.54□□□□□ -0.082e-6■■■■□ 21
SHMT2-221ENST00000555773 C1QTNF8P60827 252 aa14.54□□□□□ -0.08
SHMT2-221ENST00000555773 GRM4Q14833 912 aa14.54□□□□□ -0.08
SHMT2-221ENST00000555773 ZYXQ15942 572 aaKnown RBP14.54□□□□□ -0.08
SHMT2-221ENST00000555773 ASPRV1Q53RT3 343 aa14.54□□□□□ -0.08
SHMT2-221ENST00000555773 LZTS2Q9BRK4 669 aa14.54□□□□□ -0.08
SHMT2-221ENST00000555773 LARP6Q9BRS8 491 aaKnown RBP14.54□□□□□ -0.08
SHMT2-221ENST00000555773 SLKQ9H2G2 1235 aaPredicted RBP14.54□□□□□ -0.08
SHMT2-221ENST00000555773 RBM28Q9NW13 759 aaKnown RBP14.54□□□□□ -0.08
SHMT2-221ENST00000555773 TRPM7Q96QT4 1865 aa14.53□□□□□ -0.08
SHMT2-221ENST00000555773 TESPA1A2RU30 521 aaPredicted RBP14.53□□□□□ -0.08
SHMT2-221ENST00000555773 PALM3A6NDB9 673 aaPredicted RBP14.53□□□□□ -0.08
SHMT2-221ENST00000555773 GOLGA8BA8MQT2 603 aa14.53□□□□□ -0.08
SHMT2-221ENST00000555773 FAM155AB1AL88 458 aaPredicted RBP14.53□□□□□ -0.08
SHMT2-221ENST00000555773 PLA2G6O60733 806 aa14.53□□□□□ -0.08
SHMT2-221ENST00000555773 SMARCA1P28370 1054 aa14.53□□□□□ -0.08
SHMT2-221ENST00000555773 ZNF543Q08ER8 600 aa14.53□□□□□ -0.08
SHMT2-221ENST00000555773 PABPC4Q13310 644 aaKnown RBP eCLIP14.53□□□□□ -0.08
SHMT2-221ENST00000555773 KIAA1755Q5JYT7 1200 aa14.53□□□□□ -0.08
SHMT2-221ENST00000555773 MICU3Q86XE3 530 aa14.53□□□□□ -0.08
SHMT2-221ENST00000555773 REM2Q8IYK8 340 aaPredicted RBP14.53□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms