RNA–Protein interactions for RNA: ENST00000553950.5

SHMT2-210, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-210ENST00000553950 FSTL1Q12841 308 aa16.92■□□□□ 0.3
SHMT2-210ENST00000553950 VGLL4Q14135 290 aa16.92■□□□□ 0.3
SHMT2-210ENST00000553950 RRP1BQ14684 758 aaKnown RBP16.92■□□□□ 0.3
SHMT2-210ENST00000553950 RTN1Q16799 776 aa16.92■□□□□ 0.3
SHMT2-210ENST00000553950 ASPRV1Q53RT3 343 aa16.92■□□□□ 0.3
SHMT2-210ENST00000553950 GPATCH4Q5T3I0 446 aaKnown RBP16.92■□□□□ 0.3
SHMT2-210ENST00000553950 DCAF4Q8WV16 495 aa16.92■□□□□ 0.3
SHMT2-210ENST00000553950 LLPHQ9BRT6 129 aaKnown RBP16.92■□□□□ 0.3
SHMT2-210ENST00000553950 WDR18Q9BV38 432 aa16.92■□□□□ 0.3
SHMT2-210ENST00000553950 TMX2Q9Y320 296 aa16.92■□□□□ 0.3
SHMT2-210ENST00000553950 KIF3AQ9Y496 699 aa16.92■□□□□ 0.3
SHMT2-210ENST00000553950 TRAF5O00463 557 aa16.91■□□□□ 0.3
SHMT2-210ENST00000553950 CELF2O95319 508 aaKnown RBP16.91■□□□□ 0.3
SHMT2-210ENST00000553950 SLURP2P0DP57 97 aa16.91■□□□□ 0.3
SHMT2-210ENST00000553950 PTPRAP18433 802 aa16.91■□□□□ 0.3
SHMT2-210ENST00000553950 TROAPQ12815 778 aa16.91■□□□□ 0.3
SHMT2-210ENST00000553950 CUL4AQ13619 759 aa16.91■□□□□ 0.3
SHMT2-210ENST00000553950 ME3Q16798 604 aa16.91■□□□□ 0.3
SHMT2-210ENST00000553950 LRRC47Q8N1G4 583 aaKnown RBP16.91■□□□□ 0.3
SHMT2-210ENST00000553950 NUP133Q8WUM0 1156 aa16.91■□□□□ 0.3
SHMT2-210ENST00000553950 LPAR1Q92633 364 aa16.91■□□□□ 0.3
SHMT2-210ENST00000553950 IPO9Q96P70 1041 aaKnown RBP16.91■□□□□ 0.3
SHMT2-210ENST00000553950 LZTS2Q9BRK4 669 aa16.91■□□□□ 0.3
SHMT2-210ENST00000553950 GPHNQ9NQX3 736 aaPredicted RBP16.91■□□□□ 0.3
SHMT2-210ENST00000553950 BRPF3Q9ULD4 1205 aa16.91■□□□□ 0.3
SHMT2-210ENST00000553950 SNCAIPQ9Y6H5 919 aa16.91■□□□□ 0.3
SHMT2-210ENST00000553950 ITGBL1O95965 494 aaPredicted RBP16.9■□□□□ 0.3
SHMT2-210ENST00000553950 PPATQ06203 517 aa16.9■□□□□ 0.3
SHMT2-210ENST00000553950 PRKG1Q13976 671 aa16.9■□□□□ 0.3
SHMT2-210ENST00000553950 GRM4Q14833 912 aa16.9■□□□□ 0.3
SHMT2-210ENST00000553950 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.9■□□□□ 0.3
SHMT2-210ENST00000553950 ERO1BQ86YB8 467 aa16.9■□□□□ 0.3
SHMT2-210ENST00000553950 ZNF280CQ8ND82 737 aa16.9■□□□□ 0.3
SHMT2-210ENST00000553950 ZKSCAN4Q969J2 545 aaPredicted RBP16.9■□□□□ 0.3
SHMT2-210ENST00000553950 GMCL1Q96IK5 515 aa16.9■□□□□ 0.3
SHMT2-210ENST00000553950 KIAA1683Q9H0B3 1180 aa16.9■□□□□ 0.3
SHMT2-210ENST00000553950 RBM27Q9P2N5 1060 aaKnown RBP16.9■□□□□ 0.3
SHMT2-210ENST00000553950 SPDYE5A6NIY4 337 aa16.89■□□□□ 0.29
SHMT2-210ENST00000553950 C19orf81C9J6K1 198 aa16.89■□□□□ 0.29
SHMT2-210ENST00000553950 USP17L10C9JJH3 530 aa16.89■□□□□ 0.29
SHMT2-210ENST00000553950 PARP1P09874 1014 aaKnown RBP16.89■□□□□ 0.29
SHMT2-210ENST00000553950 SNHG28P0DPA3 235 aa16.89■□□□□ 0.29
SHMT2-210ENST00000553950 HMGN5P82970 282 aaKnown RBP16.89■□□□□ 0.29
SHMT2-210ENST00000553950 SCRN1Q12765 414 aa16.89■□□□□ 0.29
SHMT2-210ENST00000553950 STK3Q13188 491 aa16.89■□□□□ 0.29
SHMT2-210ENST00000553950 CLEC10AQ8IUN9 316 aa16.89■□□□□ 0.29
SHMT2-210ENST00000553950 CCDC83Q8IWF9 413 aa16.89■□□□□ 0.29
SHMT2-210ENST00000553950 FANCBQ8NB91 859 aa16.89■□□□□ 0.29
SHMT2-210ENST00000553950 VCPKMTQ9H867 229 aa16.89■□□□□ 0.29
SHMT2-210ENST00000553950 SENP2Q9HC62 589 aa16.89■□□□□ 0.29
SHMT2-210ENST00000553950 PASKQ96RG2 1323 aa16.89■□□□□ 0.29
SHMT2-210ENST00000553950 PARP14Q460N5 1801 aa16.89■□□□□ 0.29
SHMT2-210ENST00000553950 LARGE1O95461 756 aa16.88■□□□□ 0.29
SHMT2-210ENST00000553950 PDHBP11177 359 aa16.88■□□□□ 0.29
SHMT2-210ENST00000553950 SLC1A4P43007 532 aa16.88■□□□□ 0.29
SHMT2-210ENST00000553950 PPIL2Q13356 520 aa16.88■□□□□ 0.29
SHMT2-210ENST00000553950 LDLRAD1Q5T700 205 aa16.88■□□□□ 0.29
SHMT2-210ENST00000553950 SLFN13Q68D06 897 aa16.88■□□□□ 0.29
SHMT2-210ENST00000553950 TRIM22Q8IYM9 498 aa16.88■□□□□ 0.29
SHMT2-210ENST00000553950 ZNF784Q8NCA9 323 aaPredicted RBP16.88■□□□□ 0.29
SHMT2-210ENST00000553950 HPS5Q9UPZ3 1129 aa16.88■□□□□ 0.29
SHMT2-210ENST00000553950 STK36Q9NRP7 1315 aa16.88■□□□□ 0.29
SHMT2-210ENST00000553950 WDR46O15213 610 aaKnown RBP16.87■□□□□ 0.29
SHMT2-210ENST00000553950 PDIA4P13667 645 aaKnown RBP16.87■□□□□ 0.29
SHMT2-210ENST00000553950 SMARCA1P28370 1054 aa16.87■□□□□ 0.29
SHMT2-210ENST00000553950 JAG1P78504 1218 aa16.87■□□□□ 0.29
SHMT2-210ENST00000553950 CCDC96Q2M329 555 aa16.87■□□□□ 0.29
SHMT2-210ENST00000553950 SHROOM1Q2M3G4 852 aaPredicted RBP16.87■□□□□ 0.29
SHMT2-210ENST00000553950 USP17L2Q6R6M4 530 aa16.87■□□□□ 0.29
SHMT2-210ENST00000553950 C12orf42Q96LP6 360 aa16.87■□□□□ 0.29
SHMT2-210ENST00000553950 LARP6Q9BRS8 491 aaKnown RBP16.87■□□□□ 0.29
SHMT2-210ENST00000553950 MYL10Q9BUA6 226 aa16.87■□□□□ 0.29
SHMT2-210ENST00000553950 TMOD4Q9NZQ9 345 aa16.87■□□□□ 0.29
SHMT2-210ENST00000553950 ZHX2Q9Y6X8 837 aa16.87■□□□□ 0.29
SHMT2-210ENST00000553950 F5H6K3 240 aa16.86■□□□□ 0.29
SHMT2-210ENST00000553950 NDUFB10O96000 172 aa16.86■□□□□ 0.29
SHMT2-210ENST00000553950 IFNAR1P17181 557 aa16.86■□□□□ 0.29
SHMT2-210ENST00000553950 BACE1P56817 501 aa16.86■□□□□ 0.29
SHMT2-210ENST00000553950 CCT2P78371 535 aaKnown RBP16.86■□□□□ 0.29
SHMT2-210ENST00000553950 AKAP17AQ02040 695 aaKnown RBP16.86■□□□□ 0.29
SHMT2-210ENST00000553950 KLRC3Q07444 240 aa16.86■□□□□ 0.29
SHMT2-210ENST00000553950 ZNF543Q08ER8 600 aa16.86■□□□□ 0.29
SHMT2-210ENST00000553950 TMTC3Q6ZXV5 915 aa16.86■□□□□ 0.29
SHMT2-210ENST00000553950 WASF1Q92558 559 aa16.86■□□□□ 0.29
SHMT2-210ENST00000553950 ELP3Q9H9T3 547 aa16.86■□□□□ 0.29
SHMT2-210ENST00000553950 CWC22Q9HCG8 908 aaKnown RBP16.86■□□□□ 0.29
SHMT2-210ENST00000553950 SMC3Q9UQE7 1217 aa16.86■□□□□ 0.29
SHMT2-210ENST00000553950 PALM3A6NDB9 673 aaPredicted RBP16.85■□□□□ 0.29
SHMT2-210ENST00000553950 CXCL11O14625 94 aa16.85■□□□□ 0.29
SHMT2-210ENST00000553950 RAD21O60216 631 aa16.85■□□□□ 0.29
SHMT2-210ENST00000553950 BMP3P12645 472 aa16.85■□□□□ 0.29
SHMT2-210ENST00000553950 RXRAP19793 462 aa16.85■□□□□ 0.29
SHMT2-210ENST00000553950 ECE1P42892 770 aa16.85■□□□□ 0.29
SHMT2-210ENST00000553950 MTMR2Q13614 643 aa16.85■□□□□ 0.29
SHMT2-210ENST00000553950 DLK2Q6UY11 383 aa16.85■□□□□ 0.29
SHMT2-210ENST00000553950 SIAH1Q8IUQ4 282 aa16.85■□□□□ 0.29
SHMT2-210ENST00000553950 CCDC144CPQ8IYA2 1237 aa16.85■□□□□ 0.29
SHMT2-210ENST00000553950 NECAB1Q8N987 351 aa16.85■□□□□ 0.29
SHMT2-210ENST00000553950 SLC10A4Q96EP9 437 aa16.85■□□□□ 0.29
SHMT2-210ENST00000553950 SPZ1Q9BXG8 430 aa16.85■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms