RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 HHIPL1Q96JK4 782 aa11.21□□□□□ -0.61
LIMA1-211ENST00000552338 LLPHQ9BRT6 129 aaKnown RBP11.21□□□□□ -0.61
LIMA1-211ENST00000552338 AS3MTQ9HBK9 375 aa11.21□□□□□ -0.61
LIMA1-211ENST00000552338 ARHGEF10LQ9HCE6 1279 aa11.21□□□□□ -0.61
LIMA1-211ENST00000552338 GBA2Q9HCG7 927 aaPredicted RBP11.21□□□□□ -0.61
LIMA1-211ENST00000552338 FAM217BQ9NTX9 383 aaPredicted RBP11.21□□□□□ -0.61
LIMA1-211ENST00000552338 AFG3L2Q9Y4W6 797 aa11.21□□□□□ -0.61
LIMA1-211ENST00000552338 LOC285556D6RIA3 1793 aa11.21□□□□□ -0.62
LIMA1-211ENST00000552338 RLFQ13129 1914 aa11.2□□□□□ -0.62
LIMA1-211ENST00000552338 PALM3A6NDB9 673 aaPredicted RBP11.2□□□□□ -0.62
LIMA1-211ENST00000552338 CCDC69A6NI79 296 aa11.2□□□□□ -0.62
LIMA1-211ENST00000552338 SPDYE5A6NIY4 337 aa11.2□□□□□ -0.62
LIMA1-211ENST00000552338 TRAF5O00463 557 aa11.2□□□□□ -0.62
LIMA1-211ENST00000552338 ANP32AP39687 249 aaKnown RBP11.2□□□□□ -0.62
LIMA1-211ENST00000552338 ST3GAL1Q11201 340 aa11.2□□□□□ -0.62
LIMA1-211ENST00000552338 VGLL4Q14135 290 aa11.2□□□□□ -0.62
LIMA1-211ENST00000552338 BECN1Q14457 450 aa11.2□□□□□ -0.62
LIMA1-211ENST00000552338 NTRK3Q16288 839 aa11.2□□□□□ -0.62
LIMA1-211ENST00000552338 SHROOM1Q2M3G4 852 aaPredicted RBP11.2□□□□□ -0.62
LIMA1-211ENST00000552338 CATIPQ7Z7H3 387 aa11.2□□□□□ -0.62
LIMA1-211ENST00000552338 ERO1BQ86YB8 467 aa11.2□□□□□ -0.62
LIMA1-211ENST00000552338 HSCBQ8IWL3 235 aa11.2□□□□□ -0.62
LIMA1-211ENST00000552338 FANCBQ8NB91 859 aa11.2□□□□□ -0.62
LIMA1-211ENST00000552338 ZNF526Q8TF50 670 aaPredicted RBP11.2□□□□□ -0.62
LIMA1-211ENST00000552338 GTF3C6Q969F1 213 aa11.2□□□□□ -0.62
LIMA1-211ENST00000552338 ZKSCAN4Q969J2 545 aaPredicted RBP11.2□□□□□ -0.62
LIMA1-211ENST00000552338 GMCL1Q96IK5 515 aa11.2□□□□□ -0.62
LIMA1-211ENST00000552338 SH2D4AQ9H788 454 aa11.2□□□□□ -0.62
LIMA1-211ENST00000552338 KAT14Q9H8E8 782 aa11.2□□□□□ -0.62
LIMA1-211ENST00000552338 RBM28Q9NW13 759 aaKnown RBP11.2□□□□□ -0.62
LIMA1-211ENST00000552338 CLIP2Q9UDT6 1046 aa11.2□□□□□ -0.62
LIMA1-211ENST00000552338 STX8Q9UNK0 236 aa11.2□□□□□ -0.62
LIMA1-211ENST00000552338 KCNH4Q9UQ05 1017 aa11.2□□□□□ -0.62
LIMA1-211ENST00000552338 SLC12A7Q9Y666 1083 aa11.2□□□□□ -0.62
LIMA1-211ENST00000552338 KLF18A0A0U1RQI7 1052 aa11.19□□□□□ -0.62
LIMA1-211ENST00000552338 CCDC196A0A1B0GTZ2 297 aa11.19□□□□□ -0.62
LIMA1-211ENST00000552338 USP17L10C9JJH3 530 aa11.19□□□□□ -0.62
LIMA1-211ENST00000552338 MPHOSPH10O00566 681 aaKnown RBP11.19□□□□□ -0.62
LIMA1-211ENST00000552338 CXCL11O14625 94 aa11.19□□□□□ -0.62
LIMA1-211ENST00000552338 ZBTB43O43298 467 aa11.19□□□□□ -0.62
LIMA1-211ENST00000552338 LARGE1O95461 756 aa11.19□□□□□ -0.62
LIMA1-211ENST00000552338 PDHBP11177 359 aa11.19□□□□□ -0.62
LIMA1-211ENST00000552338 USP14P54578 494 aa11.19□□□□□ -0.62
LIMA1-211ENST00000552338 BACE1P56817 501 aa11.19□□□□□ -0.62
LIMA1-211ENST00000552338 FGD1P98174 961 aa11.19□□□□□ -0.62
LIMA1-211ENST00000552338 SCRN1Q12765 414 aa11.19□□□□□ -0.62
LIMA1-211ENST00000552338 GRM4Q14833 912 aa11.19□□□□□ -0.62
LIMA1-211ENST00000552338 RAB3GAP1Q15042 981 aa11.19□□□□□ -0.62
LIMA1-211ENST00000552338 GPATCH4Q5T3I0 446 aaKnown RBP11.19□□□□□ -0.62
LIMA1-211ENST00000552338 BTNL9Q6UXG8 535 aa11.19□□□□□ -0.62
LIMA1-211ENST00000552338 SYNE3Q6ZMZ3 975 aa11.19□□□□□ -0.62
LIMA1-211ENST00000552338 C2orf69Q8N8R5 385 aa11.19□□□□□ -0.62
LIMA1-211ENST00000552338 ZNF280CQ8ND82 737 aa11.19□□□□□ -0.62
LIMA1-211ENST00000552338 DCAF4Q8WV16 495 aa11.19□□□□□ -0.62
LIMA1-211ENST00000552338 LPAR1Q92633 364 aa11.19□□□□□ -0.62
LIMA1-211ENST00000552338 SLKQ9H2G2 1235 aaPredicted RBP11.19□□□□□ -0.62
LIMA1-211ENST00000552338 VCPKMTQ9H867 229 aa11.19□□□□□ -0.62
LIMA1-211ENST00000552338 PICK1Q9NRD5 415 aa11.19□□□□□ -0.62
LIMA1-211ENST00000552338 CSADQ9Y600 493 aa11.19□□□□□ -0.62
LIMA1-211ENST00000552338 F5H6K3 240 aa11.18□□□□□ -0.62
LIMA1-211ENST00000552338 DHX16O60231 1041 aaKnown RBP11.18□□□□□ -0.62
LIMA1-211ENST00000552338 CELF2O95319 508 aaKnown RBP11.18□□□□□ -0.62
LIMA1-211ENST00000552338 IFNAR1P17181 557 aa11.18□□□□□ -0.62
LIMA1-211ENST00000552338 GNAQP50148 359 aa11.18□□□□□ -0.62
LIMA1-211ENST00000552338 FMR1Q06787 632 aaKnown RBP eCLIP11.18□□□□□ -0.62
LIMA1-211ENST00000552338 KLRC3Q07444 240 aa11.18□□□□□ -0.62
LIMA1-211ENST00000552338 FUT2Q10981 343 aa11.18□□□□□ -0.62
LIMA1-211ENST00000552338 PPIL2Q13356 520 aa11.18□□□□□ -0.62
LIMA1-211ENST00000552338 ASPRV1Q53RT3 343 aa11.18□□□□□ -0.62
LIMA1-211ENST00000552338 SMARCC2Q8TAQ2 1214 aa11.18□□□□□ -0.62
LIMA1-211ENST00000552338 LZTS2Q9BRK4 669 aa11.18□□□□□ -0.62
LIMA1-211ENST00000552338 MAD2L2Q9UI95 211 aa11.18□□□□□ -0.62
LIMA1-211ENST00000552338 CTDNEP1O95476 244 aa11.17□□□□□ -0.62
LIMA1-211ENST00000552338 ZBTB48P10074 688 aaPredicted RBP11.17□□□□□ -0.62
LIMA1-211ENST00000552338 PDIA4P13667 645 aaKnown RBP11.17□□□□□ -0.62
LIMA1-211ENST00000552338 CDC27P30260 824 aa11.17□□□□□ -0.62
LIMA1-211ENST00000552338 KIF5BP33176 963 aa11.17□□□□□ -0.62
LIMA1-211ENST00000552338 ECE1P42892 770 aa11.17□□□□□ -0.62
LIMA1-211ENST00000552338 METAP2P50579 478 aaKnown RBP eCLIP11.17□□□□□ -0.62
LIMA1-211ENST00000552338 ZNF543Q08ER8 600 aa11.17□□□□□ -0.62
LIMA1-211ENST00000552338 USP17L2Q6R6M4 530 aa11.17□□□□□ -0.62
LIMA1-211ENST00000552338 NFXL1Q6ZNB6 911 aa11.17□□□□□ -0.62
LIMA1-211ENST00000552338 NBPF11Q86T75 865 aa11.17□□□□□ -0.62
LIMA1-211ENST00000552338 SAPCD2Q86UD0 394 aa11.17□□□□□ -0.62
LIMA1-211ENST00000552338 FAM177A1Q8N128 213 aaPredicted RBP11.17□□□□□ -0.62
LIMA1-211ENST00000552338 ACER1Q8TDN7 264 aa11.17□□□□□ -0.62
LIMA1-211ENST00000552338 MTMR8Q96EF0 704 aa11.17□□□□□ -0.62
LIMA1-211ENST00000552338 IPO9Q96P70 1041 aaKnown RBP11.17□□□□□ -0.62
LIMA1-211ENST00000552338 SPZ1Q9BXG8 430 aa11.17□□□□□ -0.62
LIMA1-211ENST00000552338 RIOX1Q9H6W3 641 aa11.17□□□□□ -0.62
LIMA1-211ENST00000552338 GOPCQ9HD26 462 aa11.17□□□□□ -0.62
LIMA1-211ENST00000552338 FZD1Q9UP38 647 aa11.17□□□□□ -0.62
LIMA1-211ENST00000552338 TLL2Q9Y6L7 1015 aa11.17□□□□□ -0.62
LIMA1-211ENST00000552338 BAZ2BQ9UIF8 2168 aaKnown RBP11.17□□□□□ -0.62
LIMA1-211ENST00000552338 STK36Q9NRP7 1315 aa11.16□□□□□ -0.62
LIMA1-211ENST00000552338 A0A0G2JLL6 359 aaPredicted RBP11.16□□□□□ -0.62
LIMA1-211ENST00000552338 UBE2Q2LH0YL09 131 aa11.16□□□□□ -0.62
LIMA1-211ENST00000552338 WDR46O15213 610 aaKnown RBP11.16□□□□□ -0.62
LIMA1-211ENST00000552338 NDUFB10O96000 172 aa11.16□□□□□ -0.62
LIMA1-211ENST00000552338 HOXA7P31268 230 aaPredicted RBP11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms