RNA–Protein interactions for RNA: ENST00000542002.5

YBX3-212, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-212ENST00000542002 ATP2B2Q01814 1243 aa11.58□□□□□ -0.56
YBX3-212ENST00000542002 USP17L24Q0WX57 530 aa11.58□□□□□ -0.56
YBX3-212ENST00000542002 PABPC4Q13310 644 aaKnown RBP eCLIP11.58□□□□□ -0.56
YBX3-212ENST00000542002 FBXO46Q6PJ61 603 aaPredicted RBP11.58□□□□□ -0.56
YBX3-212ENST00000542002 NEDD1Q8NHV4 660 aa11.58□□□□□ -0.56
YBX3-212ENST00000542002 CEP95Q96GE4 821 aa11.58□□□□□ -0.56
YBX3-212ENST00000542002 CCDC136Q96JN2 1154 aa11.58□□□□□ -0.56
YBX3-212ENST00000542002 CLIP2Q9UDT6 1046 aa11.58□□□□□ -0.56
YBX3-212ENST00000542002 PNMA3Q9UL41 463 aa11.58□□□□□ -0.56
YBX3-212ENST00000542002 GABRQQ9UN88 632 aa11.58□□□□□ -0.56
YBX3-212ENST00000542002 PTPRFP10586 1907 aa11.58□□□□□ -0.56
YBX3-212ENST00000542002 CCDC85CA6NKD9 419 aa11.57□□□□□ -0.56
YBX3-212ENST00000542002 FMNL1O95466 1100 aaPredicted RBP11.57□□□□□ -0.56
YBX3-212ENST00000542002 GCLCP48506 637 aaPredicted RBP11.57□□□□□ -0.56
YBX3-212ENST00000542002 IRX3P78415 501 aaPredicted RBP11.57□□□□□ -0.56
YBX3-212ENST00000542002 PTH1RQ03431 593 aa11.57□□□□□ -0.56
YBX3-212ENST00000542002 PDE4BQ07343 736 aa11.57□□□□□ -0.56
YBX3-212ENST00000542002 TBC1D10CQ8IV04 446 aa11.57□□□□□ -0.56
YBX3-212ENST00000542002 MKL1Q969V6 931 aa11.57□□□□□ -0.56
YBX3-212ENST00000542002 VCPKMTQ9H867 229 aa11.57□□□□□ -0.56
YBX3-212ENST00000542002 ARHGEF10LQ9HCE6 1279 aa11.57□□□□□ -0.56
YBX3-212ENST00000542002 MTMR4Q9NYA4 1195 aa11.57□□□□□ -0.56
YBX3-212ENST00000542002 BTBD7Q9P203 1132 aa11.57□□□□□ -0.56
YBX3-212ENST00000542002 NYAP2Q9P242 653 aa11.57□□□□□ -0.56
YBX3-212ENST00000542002 MORF4L1Q9UBU8 362 aa11.57□□□□□ -0.56
YBX3-212ENST00000542002 PTCH2Q9Y6C5 1203 aa11.57□□□□□ -0.56
YBX3-212ENST00000542002 LOC285556D6RIA3 1793 aa11.56□□□□□ -0.56
YBX3-212ENST00000542002 ORC4O43929 436 aa11.56□□□□□ -0.56
YBX3-212ENST00000542002 SLC3A2P08195 630 aaKnown RBP11.56□□□□□ -0.56
YBX3-212ENST00000542002 FAM110CQ1W6H9 321 aa11.56□□□□□ -0.56
YBX3-212ENST00000542002 NUP88Q99567 741 aaPredicted RBP11.56□□□□□ -0.56
YBX3-212ENST00000542002 DSCC1Q9BVC3 393 aa11.56□□□□□ -0.56
YBX3-212ENST00000542002 ZNF287Q9HBT7 754 aa11.56□□□□□ -0.56
YBX3-212ENST00000542002 FBXO28Q9NVF7 368 aa11.56□□□□□ -0.56
YBX3-212ENST00000542002 SRRDQ9UH36 339 aa11.56□□□□□ -0.56
YBX3-212ENST00000542002 GJD2Q9UKL4 321 aa11.56□□□□□ -0.56
YBX3-212ENST00000542002 ZMYM6O95789 1325 aa11.56□□□□□ -0.56
YBX3-212ENST00000542002 ZSWIM8A7E2V4 1837 aa11.56□□□□□ -0.56
YBX3-212ENST00000542002 SPDYE16A6NNV3 312 aaPredicted RBP11.55□□□□□ -0.56
YBX3-212ENST00000542002 F5H6K3 240 aa11.55□□□□□ -0.56
YBX3-212ENST00000542002 SGSM2O43147 1006 aa11.55□□□□□ -0.56
YBX3-212ENST00000542002 TSPY3P0CV98 308 aa11.55□□□□□ -0.56
YBX3-212ENST00000542002 TSPY8P0CW00 308 aa11.55□□□□□ -0.56
YBX3-212ENST00000542002 NOVP48745 357 aa11.55□□□□□ -0.56
YBX3-212ENST00000542002 MFAP1P55081 439 aaKnown RBP11.55□□□□□ -0.56
YBX3-212ENST00000542002 PRKCZQ05513 592 aa11.55□□□□□ -0.56
YBX3-212ENST00000542002 KLRC3Q07444 240 aa11.55□□□□□ -0.56
YBX3-212ENST00000542002 COG2Q14746 738 aa11.55□□□□□ -0.56
YBX3-212ENST00000542002 KIF22Q14807 665 aa11.55□□□□□ -0.56
YBX3-212ENST00000542002 GPRC5AQ8NFJ5 357 aa11.55□□□□□ -0.56
YBX3-212ENST00000542002 PAGR1Q9BTK6 254 aa11.55□□□□□ -0.56
YBX3-212ENST00000542002 PORCNQ9H237 461 aa11.55□□□□□ -0.56
YBX3-212ENST00000542002 TAF6LQ9Y6J9 622 aa11.55□□□□□ -0.56
YBX3-212ENST00000542002 BRCA2P51587 3418 aa11.54□□□□□ -0.56
YBX3-212ENST00000542002 ZNF213O14771 459 aa11.54□□□□□ -0.56
YBX3-212ENST00000542002 RANBP6O60518 1105 aaKnown RBP11.54□□□□□ -0.56
YBX3-212ENST00000542002 TTLL1O95922 423 aa11.54□□□□□ -0.56
YBX3-212ENST00000542002 NDUFB10O96000 172 aa11.54□□□□□ -0.56
YBX3-212ENST00000542002 GNRH1P01148 92 aa11.54□□□□□ -0.56
YBX3-212ENST00000542002 NEFLP07196 543 aa11.54□□□□□ -0.56
YBX3-212ENST00000542002 CENPBP07199 599 aaPredicted RBP11.54□□□□□ -0.56
YBX3-212ENST00000542002 FLT3LGP49771 235 aa11.54□□□□□ -0.56
YBX3-212ENST00000542002 FCGRTP55899 365 aa11.54□□□□□ -0.56
YBX3-212ENST00000542002 ERVK-9P63128 1117 aa11.54□□□□□ -0.56
YBX3-212ENST00000542002 ERVK-24P63145 666 aa11.54□□□□□ -0.56
YBX3-212ENST00000542002 RRP12Q5JTH9 1297 aaKnown RBP11.54□□□□□ -0.56
YBX3-212ENST00000542002 FAM83BQ5T0W9 1011 aa11.54□□□□□ -0.56
YBX3-212ENST00000542002 AKNAD1Q5T1N1 836 aa11.54□□□□□ -0.56
YBX3-212ENST00000542002 CHRDL2Q6WN34 429 aa11.54□□□□□ -0.56
YBX3-212ENST00000542002 LBX2Q6XYB7 198 aa11.54□□□□□ -0.56
YBX3-212ENST00000542002 LRRC47Q8N1G4 583 aaKnown RBP11.54□□□□□ -0.56
YBX3-212ENST00000542002 SH3TC2Q8TF17 1288 aa11.54□□□□□ -0.56
YBX3-212ENST00000542002 STAG1Q8WVM7 1258 aa11.54□□□□□ -0.56
YBX3-212ENST00000542002 LPAR1Q92633 364 aa11.54□□□□□ -0.56
YBX3-212ENST00000542002 CHMP4CQ96CF2 233 aa11.54□□□□□ -0.56
YBX3-212ENST00000542002 TANGO6Q9C0B7 1094 aa11.54□□□□□ -0.56
YBX3-212ENST00000542002 ADAMTS5Q9UNA0 930 aa11.54□□□□□ -0.56
YBX3-212ENST00000542002 NEDD4P46934 1319 aa11.54□□□□□ -0.56
YBX3-212ENST00000542002 PLIN4Q96Q06 1357 aa11.54□□□□□ -0.56
YBX3-212ENST00000542002 TSPY2A6NKD2 308 aa11.53□□□□□ -0.56
YBX3-212ENST00000542002 TNPO2O14787 897 aaKnown RBP11.53□□□□□ -0.56
YBX3-212ENST00000542002 WDR46O15213 610 aaKnown RBP11.53□□□□□ -0.56
YBX3-212ENST00000542002 RAD21O60216 631 aa11.53□□□□□ -0.56
YBX3-212ENST00000542002 FLOT1O75955 427 aa11.53□□□□□ -0.56
YBX3-212ENST00000542002 ARHGEF6Q15052 776 aa11.53□□□□□ -0.56
YBX3-212ENST00000542002 BMP2KLQ5H9B9 411 aa11.53□□□□□ -0.56
YBX3-212ENST00000542002 MFSD6Q6ZSS7 791 aa11.53□□□□□ -0.56
YBX3-212ENST00000542002 RASGRP2Q7LDG7 609 aa11.53□□□□□ -0.56
YBX3-212ENST00000542002 ARMC5Q96C12 935 aa11.53□□□□□ -0.56
YBX3-212ENST00000542002 ATG4CQ96DT6 458 aa11.53□□□□□ -0.56
YBX3-212ENST00000542002 SH2D4AQ9H788 454 aa11.53□□□□□ -0.56
YBX3-212ENST00000542002 GOPCQ9HD26 462 aa11.53□□□□□ -0.56
YBX3-212ENST00000542002 HOXC10Q9NYD6 342 aa11.53□□□□□ -0.56
YBX3-212ENST00000542002 RABGAP1Q9Y3P9 1069 aa11.53□□□□□ -0.56
YBX3-212ENST00000542002 HOXD10P28358 340 aa11.52□□□□□ -0.57
YBX3-212ENST00000542002 RCSD1Q6JBY9 416 aa11.52□□□□□ -0.57
YBX3-212ENST00000542002 MAP4K1Q92918 833 aa11.52□□□□□ -0.57
YBX3-212ENST00000542002 TOMM22Q9NS69 142 aa11.52□□□□□ -0.57
YBX3-212ENST00000542002 TCP11L1Q9NUJ3 509 aa11.52□□□□□ -0.57
YBX3-212ENST00000542002 PPP4R2Q9NY27 417 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms