RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 ZNF654Q8IZM8 581 aa7.99□□□□□ -1.13
USP28-202ENST00000535607 DTWD1Q8N5C7 304 aa7.99□□□□□ -1.13
USP28-202ENST00000535607 NSD2O96028 1365 aa7.98□□□□□ -1.13
USP28-202ENST00000535607 PPIP5K1Q6PFW1 1433 aa7.98□□□□□ -1.13
USP28-202ENST00000535607 FAM181BA6NEQ2 426 aa7.98□□□□□ -1.13
USP28-202ENST00000535607 SOX1O00570 391 aaPredicted RBP7.98□□□□□ -1.13
USP28-202ENST00000535607 WIPF1O43516 503 aa7.98□□□□□ -1.13
USP28-202ENST00000535607 CELA3AP09093 270 aa7.98□□□□□ -1.13
USP28-202ENST00000535607 NME2P22392 152 aa7.98□□□□□ -1.13
USP28-202ENST00000535607 RARSP54136 660 aaKnown RBP7.98□□□□□ -1.13
USP28-202ENST00000535607 ZNF445P59923 1031 aa7.98□□□□□ -1.13
USP28-202ENST00000535607 HMGN5P82970 282 aaKnown RBP7.98□□□□□ -1.13
USP28-202ENST00000535607 SAFB2Q14151 953 aaKnown RBP eCLIP7.98□□□□□ -1.13
USP28-202ENST00000535607 PCNX4Q63HM2 1172 aa7.98□□□□□ -1.13
USP28-202ENST00000535607 SASS6Q6UVJ0 657 aa7.98□□□□□ -1.13
USP28-202ENST00000535607 SULF2Q8IWU5 870 aa7.98□□□□□ -1.13
USP28-202ENST00000535607 BEND7Q8N7W2 519 aaPredicted RBP7.98□□□□□ -1.13
USP28-202ENST00000535607 PANK1Q8TE04 598 aa7.98□□□□□ -1.13
USP28-202ENST00000535607 TNPO1Q92973 898 aaKnown RBP7.98□□□□□ -1.13
USP28-202ENST00000535607 CARD10Q9BWT7 1032 aa7.98□□□□□ -1.13
USP28-202ENST00000535607 TGIF2Q9GZN2 237 aa7.98□□□□□ -1.13
USP28-202ENST00000535607 NOL7Q9UMY1 257 aaKnown RBP7.98□□□□□ -1.13
USP28-202ENST00000535607 CPSF1Q10570 1443 aaKnown RBP7.97□□□□□ -1.13
USP28-202ENST00000535607 MINDY4BA8MYZ0 360 aa7.97□□□□□ -1.13
USP28-202ENST00000535607 NID1P14543 1247 aa7.97□□□□□ -1.13
USP28-202ENST00000535607 LIG3P49916 1009 aa7.97□□□□□ -1.13
USP28-202ENST00000535607 ZC3H6P61129 1189 aaKnown RBP7.97□□□□□ -1.13
USP28-202ENST00000535607 FAAP100Q0VG06 881 aa7.97□□□□□ -1.13
USP28-202ENST00000535607 SUZ12Q15022 739 aaKnown RBP7.97□□□□□ -1.13
USP28-202ENST00000535607 ZNF423Q2M1K9 1284 aa7.97□□□□□ -1.13
USP28-202ENST00000535607 DZIP1LQ8IYY4 767 aaKnown RBP7.97□□□□□ -1.13
USP28-202ENST00000535607 ACSBG1Q96GR2 724 aa7.97□□□□□ -1.13
USP28-202ENST00000535607 RSRP1Q9BUV0 290 aa7.97□□□□□ -1.13
USP28-202ENST00000535607 CDK19Q9BWU1 502 aa7.97□□□□□ -1.13
USP28-202ENST00000535607 USP26Q9BXU7 913 aa7.97□□□□□ -1.13
USP28-202ENST00000535607 C19orf44Q9H6X5 657 aa7.97□□□□□ -1.13
USP28-202ENST00000535607 CWC22Q9HCG8 908 aaKnown RBP7.97□□□□□ -1.13
USP28-202ENST00000535607 KBTBD4Q9NVX7 518 aa7.97□□□□□ -1.13
USP28-202ENST00000535607 CYP8B1Q9UNU6 501 aa7.97□□□□□ -1.13
USP28-202ENST00000535607 EPB41L3Q9Y2J2 1087 aaPredicted RBP7.97□□□□□ -1.13
USP28-202ENST00000535607 DDX49Q9Y6V7 483 aaKnown RBP7.97□□□□□ -1.13
USP28-202ENST00000535607 CD163L1Q9NR16 1453 aa7.97□□□□□ -1.13
USP28-202ENST00000535607 ANKRD26Q9UPS8 1709 aa7.97□□□□□ -1.13
USP28-202ENST00000535607 ZNF335Q9H4Z2 1342 aaPredicted RBP7.97□□□□□ -1.13
USP28-202ENST00000535607 A0A1W2PP64 1363 aa7.97□□□□□ -1.13
USP28-202ENST00000535607 MST1RQ04912 1400 aa7.96□□□□□ -1.13
USP28-202ENST00000535607 EDC4Q6P2E9 1401 aaKnown RBP7.96□□□□□ -1.13
USP28-202ENST00000535607 USP54Q70EL1 1684 aa7.96□□□□□ -1.13
USP28-202ENST00000535607 K7ELQ4 463 aaPredicted RBP7.96□□□□□ -1.14
USP28-202ENST00000535607 ENC1O14682 589 aa7.96□□□□□ -1.14
USP28-202ENST00000535607 DDIT3P35638 169 aa7.96□□□□□ -1.14
USP28-202ENST00000535607 BAG6P46379 1132 aa7.96□□□□□ -1.14
USP28-202ENST00000535607 RPS26P62854 115 aaKnown RBP7.96□□□□□ -1.14
USP28-202ENST00000535607 SNAP47Q5SQN1 464 aa7.96□□□□□ -1.14
USP28-202ENST00000535607 LCE2CQ5TA81 110 aa7.96□□□□□ -1.14
USP28-202ENST00000535607 LLGL2Q6P1M3 1020 aa7.96□□□□□ -1.14
USP28-202ENST00000535607 CCDC146Q8IYE0 955 aa7.96□□□□□ -1.14
USP28-202ENST00000535607 KCNB2Q92953 911 aa7.96□□□□□ -1.14
USP28-202ENST00000535607 SYAP1Q96A49 352 aaPredicted RBP7.96□□□□□ -1.14
USP28-202ENST00000535607 PLVAPQ9BX97 442 aa7.96□□□□□ -1.14
USP28-202ENST00000535607 MIR1-1HGQ9H1L0 117 aa7.96□□□□□ -1.14
USP28-202ENST00000535607 TERF2IPQ9NYB0 399 aa7.96□□□□□ -1.14
USP28-202ENST00000535607 KIF20BQ96Q89 1820 aa7.96□□□□□ -1.14
USP28-202ENST00000535607 ARNTP27540 789 aa7.95□□□□□ -1.14
USP28-202ENST00000535607 CD68P34810 354 aaPredicted RBP7.95□□□□□ -1.14
USP28-202ENST00000535607 NLRP12P59046 1061 aa7.95□□□□□ -1.14
USP28-202ENST00000535607 POU4F3Q15319 338 aa7.95□□□□□ -1.14
USP28-202ENST00000535607 ZNF394Q53GI3 561 aa7.95□□□□□ -1.14
USP28-202ENST00000535607 LDLRAD1Q5T700 205 aa7.95□□□□□ -1.14
USP28-202ENST00000535607 SCARF2Q96GP6 870 aaPredicted RBP7.95□□□□□ -1.14
USP28-202ENST00000535607 TMEM74Q96NL1 305 aa7.95□□□□□ -1.14
USP28-202ENST00000535607 GTPBP4Q9BZE4 634 aaKnown RBP7.95□□□□□ -1.14
USP28-202ENST00000535607 INPP5FQ9Y2H2 1132 aa7.95□□□□□ -1.14
USP28-202ENST00000535607 PCDHGB7Q9Y5F8 929 aa7.95□□□□□ -1.14
USP28-202ENST00000535607 NSD3Q9BZ95 1437 aa7.95□□□□□ -1.14
USP28-202ENST00000535607 C1orf167Q5SNV9 1468 aa7.94□□□□□ -1.14
USP28-202ENST00000535607 UQCRHLA0A096LP55 91 aa7.94□□□□□ -1.14
USP28-202ENST00000535607 BPNT1O95861 308 aa7.94□□□□□ -1.14
USP28-202ENST00000535607 MBD3O95983 291 aa7.94□□□□□ -1.14
USP28-202ENST00000535607 UQCRHP07919 91 aa7.94□□□□□ -1.14
USP28-202ENST00000535607 ATF3P18847 181 aa7.94□□□□□ -1.14
USP28-202ENST00000535607 KIAA2012Q0VF49 1180 aa7.94□□□□□ -1.14
USP28-202ENST00000535607 BMP2KLQ5H9B9 411 aa7.94□□□□□ -1.14
USP28-202ENST00000535607 CASC1Q6TDU7 716 aa7.94□□□□□ -1.14
USP28-202ENST00000535607 ADAMTSL4Q6UY14 1074 aa7.94□□□□□ -1.14
USP28-202ENST00000535607 ERMP1Q7Z2K6 904 aa7.94□□□□□ -1.14
USP28-202ENST00000535607 HDGFL2Q7Z4V5 671 aaPredicted RBP7.94□□□□□ -1.14
USP28-202ENST00000535607 VPS37DQ86XT2 251 aa7.94□□□□□ -1.14
USP28-202ENST00000535607 GCC1Q96CN9 775 aa7.94□□□□□ -1.14
USP28-202ENST00000535607 TRIM56Q9BRZ2 755 aaKnown RBP7.94□□□□□ -1.14
USP28-202ENST00000535607 CCDC94Q9BW85 323 aaPredicted RBP7.94□□□□□ -1.14
USP28-202ENST00000535607 IGSF5Q9NSI5 407 aa7.94□□□□□ -1.14
USP28-202ENST00000535607 ZKSCAN5Q9Y2L8 839 aa7.94□□□□□ -1.14
USP28-202ENST00000535607 R3HCC1Q9Y3T6 440 aaKnown RBP7.94□□□□□ -1.14
USP28-202ENST00000535607 PRR36Q9H6K5 1346 aa7.94□□□□□ -1.14
USP28-202ENST00000535607 USP6P35125 1406 aa7.94□□□□□ -1.14
USP28-202ENST00000535607 A0A0A0MRY4 1105 aa7.93□□□□□ -1.14
USP28-202ENST00000535607 F6X3S4 739 aa7.93□□□□□ -1.14
USP28-202ENST00000535607 ARHGEF15O94989 841 aa7.93□□□□□ -1.14
USP28-202ENST00000535607 KIF20AO95235 890 aa7.93□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms