RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 REV1Q9UBZ9 1251 aa6.59□□□□□ -1.35
CD44-235ENST00000532339 PPRC1Q5VV67 1664 aaKnown RBP6.58□□□□□ -1.36
CD44-235ENST00000532339 MINDY4BA8MYZ0 360 aa6.58□□□□□ -1.36
CD44-235ENST00000532339 UPK3BL1B0FP48 263 aa6.58□□□□□ -1.36
CD44-235ENST00000532339 UPK3BL2E5RIL1 263 aa6.58□□□□□ -1.36
CD44-235ENST00000532339 ZNF326Q5BKZ1 582 aaKnown RBP6.58□□□□□ -1.36
CD44-235ENST00000532339 ZNF648Q5T619 568 aaPredicted RBP6.58□□□□□ -1.36
CD44-235ENST00000532339 SLFN12Q8IYM2 578 aa6.58□□□□□ -1.36
CD44-235ENST00000532339 GOLM1Q8NBJ4 401 aa6.58□□□□□ -1.36
CD44-235ENST00000532339 KIRREL1Q96J84 757 aa6.58□□□□□ -1.36
CD44-235ENST00000532339 Q96M66 194 aa6.58□□□□□ -1.36
CD44-235ENST00000532339 ALPK1Q96QP1 1244 aa6.58□□□□□ -1.36
CD44-235ENST00000532339 BCL2L13Q9BXK5 485 aa6.58□□□□□ -1.36
CD44-235ENST00000532339 KCNH3Q9ULD8 1083 aa6.58□□□□□ -1.36
CD44-235ENST00000532339 LRRC10BA6NIK2 292 aa6.57□□□□□ -1.36
CD44-235ENST00000532339 HTR3BO95264 441 aa6.57□□□□□ -1.36
CD44-235ENST00000532339 TNNI2P48788 182 aa6.57□□□□□ -1.36
CD44-235ENST00000532339 ERMP1Q7Z2K6 904 aa6.57□□□□□ -1.36
CD44-235ENST00000532339 REC114Q7Z4M0 266 aa6.57□□□□□ -1.36
CD44-235ENST00000532339 C19orf73Q9NVV2 129 aa6.57□□□□□ -1.36
CD44-235ENST00000532339 KBTBD4Q9NVX7 518 aa6.57□□□□□ -1.36
CD44-235ENST00000532339 GPATCH2Q9NW75 528 aa6.57□□□□□ -1.36
CD44-235ENST00000532339 SLAMF8Q9P0V8 285 aa6.57□□□□□ -1.36
CD44-235ENST00000532339 POLR3KQ9Y2Y1 108 aaPredicted RBP6.57□□□□□ -1.36
CD44-235ENST00000532339 NUP160Q12769 1436 aa6.57□□□□□ -1.36
CD44-235ENST00000532339 GLI2P10070 1586 aa6.57□□□□□ -1.36
CD44-235ENST00000532339 ZNF503-AS2A6NEH8 195 aa6.56□□□□□ -1.36
CD44-235ENST00000532339 GRIN3BO60391 1043 aa6.56□□□□□ -1.36
CD44-235ENST00000532339 ESR1P03372 595 aa6.56□□□□□ -1.36
CD44-235ENST00000532339 GLI1P08151 1106 aa6.56□□□□□ -1.36
CD44-235ENST00000532339 PKN1Q16512 942 aa6.56□□□□□ -1.36
CD44-235ENST00000532339 FYB2Q5VWT5 728 aa6.56□□□□□ -1.36
CD44-235ENST00000532339 FAM196AQ6ZSG2 479 aa6.56□□□□□ -1.36
CD44-235ENST00000532339 CREG2Q8IUH2 290 aa6.56□□□□□ -1.36
CD44-235ENST00000532339 KSR1Q8IVT5 923 aa6.56□□□□□ -1.36
CD44-235ENST00000532339 RNF141Q8WVD5 230 aa6.56□□□□□ -1.36
CD44-235ENST00000532339 CCDC74BQ96LY2 380 aa6.56□□□□□ -1.36
CD44-235ENST00000532339 SLC38A3Q99624 504 aa6.56□□□□□ -1.36
CD44-235ENST00000532339 GPR62Q9BZJ7 368 aa6.56□□□□□ -1.36
CD44-235ENST00000532339 DUSP15Q9H1R2 295 aaPredicted RBP6.56□□□□□ -1.36
CD44-235ENST00000532339 KLHL3Q9UH77 587 aa6.56□□□□□ -1.36
CD44-235ENST00000532339 ADCY10Q96PN6 1610 aa6.56□□□□□ -1.36
CD44-235ENST00000532339 PRG4Q92954 1404 aaPredicted RBP6.56□□□□□ -1.36
CD44-235ENST00000532339 MED1Q15648 1581 aaPredicted RBP6.56□□□□□ -1.36
CD44-235ENST00000532339 ROBO2Q9HCK4 1378 aa6.56□□□□□ -1.36
CD44-235ENST00000532339 GRIN2AQ12879 1464 aa6.55□□□□□ -1.36
CD44-235ENST00000532339 IQSEC2Q5JU85 1478 aa6.55□□□□□ -1.36
CD44-235ENST00000532339 TEX14Q8IWB6 1497 aa6.55□□□□□ -1.36
CD44-235ENST00000532339 RAC2P15153 192 aa6.55□□□□□ -1.36
CD44-235ENST00000532339 GARTP22102 1010 aa6.55□□□□□ -1.36
CD44-235ENST00000532339 TPP2P29144 1249 aaPredicted RBP6.55□□□□□ -1.36
CD44-235ENST00000532339 FZD5Q13467 585 aa6.55□□□□□ -1.36
CD44-235ENST00000532339 MLECQ14165 292 aa6.55□□□□□ -1.36
CD44-235ENST00000532339 CWF19L2Q2TBE0 894 aaKnown RBP6.55□□□□□ -1.36
CD44-235ENST00000532339 TMEM67Q5HYA8 995 aa6.55□□□□□ -1.36
CD44-235ENST00000532339 TTC6Q86TZ1 520 aa6.55□□□□□ -1.36
CD44-235ENST00000532339 DTWD2Q8NBA8 298 aa6.55□□□□□ -1.36
CD44-235ENST00000532339 GIPC2Q8TF65 315 aa6.55□□□□□ -1.36
CD44-235ENST00000532339 SUPT16HQ9Y5B9 1047 aaKnown RBP6.55□□□□□ -1.36
CD44-235ENST00000532339 CHURC1-FNTBB4DL54 471 aa6.54□□□□□ -1.36
CD44-235ENST00000532339 RBAK-RBAKDNI3L0D1 243 aa6.54□□□□□ -1.36
CD44-235ENST00000532339 SRFP11831 508 aa6.54□□□□□ -1.36
CD44-235ENST00000532339 CHMP4BP1P59074 171 aa6.54□□□□□ -1.36
CD44-235ENST00000532339 MLANAQ16655 118 aa6.54□□□□□ -1.36
CD44-235ENST00000532339 GAB4Q2WGN9 574 aa6.54□□□□□ -1.36
CD44-235ENST00000532339 MPZL3Q6UWV2 235 aa6.54□□□□□ -1.36
CD44-235ENST00000532339 PHACTR4Q8IZ21 702 aa6.54□□□□□ -1.36
CD44-235ENST00000532339 FBXO27Q8NI29 283 aa6.54□□□□□ -1.36
CD44-235ENST00000532339 FAM84AQ96KN4 292 aa6.54□□□□□ -1.36
CD44-235ENST00000532339 KREMEN1Q96MU8 473 aa6.54□□□□□ -1.36
CD44-235ENST00000532339 ASPNQ9BXN1 380 aa6.54□□□□□ -1.36
CD44-235ENST00000532339 LRRC3Q9BY71 257 aa6.54□□□□□ -1.36
CD44-235ENST00000532339 KRTAP9-9Q9BYP9 154 aa6.54□□□□□ -1.36
CD44-235ENST00000532339 KRTAP9-4Q9BYQ2 154 aa6.54□□□□□ -1.36
CD44-235ENST00000532339 KCNQ5Q9NR82 932 aa6.54□□□□□ -1.36
CD44-235ENST00000532339 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP6.54□□□□□ -1.36
CD44-235ENST00000532339 DUSP13Q9UII6 198 aa6.54□□□□□ -1.36
CD44-235ENST00000532339 TMEM59LQ9UK28 342 aa6.54□□□□□ -1.36
CD44-235ENST00000532339 WIZO95785 1651 aa6.54□□□□□ -1.36
CD44-235ENST00000532339 SRCAPQ6ZRS2 3230 aa6.53□□□□□ -1.36
CD44-235ENST00000532339 ADAMTSL3P82987 1691 aa6.53□□□□□ -1.36
CD44-235ENST00000532339 DNAJC25-GNG10A0A024R161 153 aa6.53□□□□□ -1.36
CD44-235ENST00000532339 ZBTB7CA1YPR0 619 aa6.53□□□□□ -1.36
CD44-235ENST00000532339 WASH4PA8MWX3 477 aa6.53□□□□□ -1.36
CD44-235ENST00000532339 IQCJ-SCHIP1C9J366 451 aaPredicted RBP6.53□□□□□ -1.36
CD44-235ENST00000532339 TLR3O15455 904 aaKnown RBP6.53□□□□□ -1.36
CD44-235ENST00000532339 EIF4A3P38919 411 aaKnown RBP6.53□□□□□ -1.36
CD44-235ENST00000532339 JAG1P78504 1218 aa6.53□□□□□ -1.36
CD44-235ENST00000532339 MRPL58Q14197 206 aaKnown RBP6.53□□□□□ -1.36
CD44-235ENST00000532339 FBXL19Q6PCT2 694 aa6.53□□□□□ -1.36
CD44-235ENST00000532339 HS2ST1Q7LGA3 356 aa6.53□□□□□ -1.36
CD44-235ENST00000532339 TSPYL5Q86VY4 417 aaPredicted RBP6.53□□□□□ -1.36
CD44-235ENST00000532339 BAHD1Q8TBE0 780 aaPredicted RBP6.53□□□□□ -1.36
CD44-235ENST00000532339 LIN37Q96GY3 246 aaPredicted RBP6.53□□□□□ -1.36
CD44-235ENST00000532339 COPRSQ9NQ92 184 aa6.53□□□□□ -1.36
CD44-235ENST00000532339 MESP2Q0VG99 397 aa6.52□□□□□ -1.37
CD44-235ENST00000532339 ZNF124Q15973 351 aa6.52□□□□□ -1.37
CD44-235ENST00000532339 RALGPS1Q5JS13 557 aa6.52□□□□□ -1.37
CD44-235ENST00000532339 BHLHE22Q8NFJ8 381 aaPredicted RBP6.52□□□□□ -1.37
CD44-235ENST00000532339 KIF2CQ99661 725 aa6.52□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms