RNA–Protein interactions for RNA: ENST00000528787.1

SSBP3-211, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 4

Gene SSBP3, Length 577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-211ENST00000528787 CLIP2Q9UDT6 1046 aa9.27□□□□□ -0.93
SSBP3-211ENST00000528787 SCAF8Q9UPN6 1271 aaKnown RBP9.27□□□□□ -0.93
SSBP3-211ENST00000528787 KCNH4Q9UQ05 1017 aa9.27□□□□□ -0.93
SSBP3-211ENST00000528787 KIF3AQ9Y496 699 aa9.27□□□□□ -0.93
SSBP3-211ENST00000528787 AFG3L2Q9Y4W6 797 aa9.27□□□□□ -0.93
SSBP3-211ENST00000528787 CTDP1Q9Y5B0 961 aaPredicted RBP9.27□□□□□ -0.93
SSBP3-211ENST00000528787 SNCAIPQ9Y6H5 919 aa9.27□□□□□ -0.93
SSBP3-211ENST00000528787 MYPNQ86TC9 1320 aa9.27□□□□□ -0.93
SSBP3-211ENST00000528787 FAM196BA6NMK8 535 aa9.26□□□□□ -0.93
SSBP3-211ENST00000528787 SLC10A3P09131 477 aa9.26□□□□□ -0.93
SSBP3-211ENST00000528787 PDIA4P13667 645 aaKnown RBP9.26□□□□□ -0.93
SSBP3-211ENST00000528787 HSPA6P17066 643 aa9.26□□□□□ -0.93
SSBP3-211ENST00000528787 OSBPP22059 807 aa9.26□□□□□ -0.93
SSBP3-211ENST00000528787 SMARCA1P28370 1054 aa9.26□□□□□ -0.93
SSBP3-211ENST00000528787 SLC1A4P43007 532 aa9.26□□□□□ -0.93
SSBP3-211ENST00000528787 C1QTNF8P60827 252 aa9.26□□□□□ -0.93
SSBP3-211ENST00000528787 EXOSC10Q01780 885 aaKnown RBP9.26□□□□□ -0.93
SSBP3-211ENST00000528787 SPP2Q13103 211 aa9.26□□□□□ -0.93
SSBP3-211ENST00000528787 BECN1Q14457 450 aa9.26□□□□□ -0.93
SSBP3-211ENST00000528787 SH3D19Q5HYK7 790 aa9.26□□□□□ -0.93
SSBP3-211ENST00000528787 SPRYD7Q5W111 196 aa9.26□□□□□ -0.93
SSBP3-211ENST00000528787 FAM160B2Q86V87 743 aa9.26□□□□□ -0.93
SSBP3-211ENST00000528787 RASEFQ8IZ41 740 aa9.26□□□□□ -0.93
SSBP3-211ENST00000528787 ENAHQ8N8S7 591 aaPredicted RBP9.26□□□□□ -0.93
SSBP3-211ENST00000528787 PNMA1Q8ND90 353 aa9.26□□□□□ -0.93
SSBP3-211ENST00000528787 ZNF274Q96GC6 653 aaPredicted RBP9.26□□□□□ -0.93
SSBP3-211ENST00000528787 C12orf42Q96LP6 360 aa9.26□□□□□ -0.93
SSBP3-211ENST00000528787 BEGAINQ9BUH8 593 aa9.26□□□□□ -0.93
SSBP3-211ENST00000528787 NBPF3Q9H094 633 aa9.26□□□□□ -0.93
SSBP3-211ENST00000528787 VCPKMTQ9H867 229 aa9.26□□□□□ -0.93
SSBP3-211ENST00000528787 HOXC10Q9NYD6 342 aa9.26□□□□□ -0.93
SSBP3-211ENST00000528787 A0A0G2JLL6 359 aaPredicted RBP9.25□□□□□ -0.93
SSBP3-211ENST00000528787 TRIM75PA6NK02 468 aa9.25□□□□□ -0.93
SSBP3-211ENST00000528787 USP17L15C9J2P7 530 aa9.25□□□□□ -0.93
SSBP3-211ENST00000528787 USP17L13C9JLJ4 530 aa9.25□□□□□ -0.93
SSBP3-211ENST00000528787 USP17L11C9JVI0 530 aa9.25□□□□□ -0.93
SSBP3-211ENST00000528787 USP17L18D6R9N7 530 aa9.25□□□□□ -0.93
SSBP3-211ENST00000528787 USP17L22D6RA61 530 aa9.25□□□□□ -0.93
SSBP3-211ENST00000528787 USP17L17D6RBQ6 530 aa9.25□□□□□ -0.93
SSBP3-211ENST00000528787 USP17L19D6RCP7 530 aa9.25□□□□□ -0.93
SSBP3-211ENST00000528787 USP17L20D6RJB6 530 aa9.25□□□□□ -0.93
SSBP3-211ENST00000528787 SH2B2O14492 632 aaPredicted RBP9.25□□□□□ -0.93
SSBP3-211ENST00000528787 ZBTB43O43298 467 aa9.25□□□□□ -0.93
SSBP3-211ENST00000528787 CA12O43570 354 aa9.25□□□□□ -0.93
SSBP3-211ENST00000528787 PLA2G6O60733 806 aa9.25□□□□□ -0.93
SSBP3-211ENST00000528787 SEC24BO95487 1268 aa9.25□□□□□ -0.93
SSBP3-211ENST00000528787 PARP1P09874 1014 aaKnown RBP9.25□□□□□ -0.93
SSBP3-211ENST00000528787 COPB2P35606 906 aa9.25□□□□□ -0.93
SSBP3-211ENST00000528787 USP17L24Q0WX57 530 aa9.25□□□□□ -0.93
SSBP3-211ENST00000528787 Q6ZUG5 572 aa9.25□□□□□ -0.93
SSBP3-211ENST00000528787 STOX1Q6ZVD7 989 aa9.25□□□□□ -0.93
SSBP3-211ENST00000528787 PRRT2Q7Z6L0 340 aaPredicted RBP9.25□□□□□ -0.93
SSBP3-211ENST00000528787 TEX2Q8IWB9 1127 aa9.25□□□□□ -0.93
SSBP3-211ENST00000528787 CDAN1Q8IWY9 1227 aa9.25□□□□□ -0.93
SSBP3-211ENST00000528787 FAM177A1Q8N128 213 aaPredicted RBP9.25□□□□□ -0.93
SSBP3-211ENST00000528787 MB21D1Q8N884 522 aa9.25□□□□□ -0.93
SSBP3-211ENST00000528787 TMEM47Q9BQJ4 181 aa9.25□□□□□ -0.93
SSBP3-211ENST00000528787 AGXT2Q9BYV1 514 aa9.25□□□□□ -0.93
SSBP3-211ENST00000528787 MAF1Q9H063 256 aa9.25□□□□□ -0.93
SSBP3-211ENST00000528787 DAXXQ9UER7 740 aaPredicted RBP9.25□□□□□ -0.93
SSBP3-211ENST00000528787 FEM1BQ9UK73 627 aa9.25□□□□□ -0.93
SSBP3-211ENST00000528787 LIMCH1Q9UPQ0 1083 aa9.25□□□□□ -0.93
SSBP3-211ENST00000528787 PHIPQ8WWQ0 1821 aa9.25□□□□□ -0.93
SSBP3-211ENST00000528787 PTPRFP10586 1907 aa9.25□□□□□ -0.93
SSBP3-211ENST00000528787 F5H6K3 240 aa9.24□□□□□ -0.93
SSBP3-211ENST00000528787 CPLX1O14810 134 aa9.24□□□□□ -0.93
SSBP3-211ENST00000528787 IRF6O14896 467 aa9.24□□□□□ -0.93
SSBP3-211ENST00000528787 RAD21O60216 631 aa9.24□□□□□ -0.93
SSBP3-211ENST00000528787 BMP3P12645 472 aa9.24□□□□□ -0.93
SSBP3-211ENST00000528787 HOXA7P31268 230 aaPredicted RBP9.24□□□□□ -0.93
SSBP3-211ENST00000528787 METAP2P50579 478 aaKnown RBP eCLIP9.24□□□□□ -0.93
SSBP3-211ENST00000528787 STAT2P52630 851 aa9.24□□□□□ -0.93
SSBP3-211ENST00000528787 EVCP57679 992 aa9.24□□□□□ -0.93
SSBP3-211ENST00000528787 IRX3P78415 501 aaPredicted RBP9.24□□□□□ -0.93
SSBP3-211ENST00000528787 AKAP17AQ02040 695 aaKnown RBP9.24□□□□□ -0.93
SSBP3-211ENST00000528787 KLRC3Q07444 240 aa9.24□□□□□ -0.93
SSBP3-211ENST00000528787 IKQ13123 557 aaPredicted RBP9.24□□□□□ -0.93
SSBP3-211ENST00000528787 MTMR2Q13614 643 aa9.24□□□□□ -0.93
SSBP3-211ENST00000528787 ARHGEF6Q15052 776 aa9.24□□□□□ -0.93
SSBP3-211ENST00000528787 SEC23AQ15436 765 aa9.24□□□□□ -0.93
SSBP3-211ENST00000528787 ADCK5Q3MIX3 580 aa9.24□□□□□ -0.93
SSBP3-211ENST00000528787 SLFN13Q68D06 897 aa9.24□□□□□ -0.93
SSBP3-211ENST00000528787 ANKRD23Q86SG2 305 aa9.24□□□□□ -0.93
SSBP3-211ENST00000528787 RASAL3Q86YV0 1011 aa9.24□□□□□ -0.93
SSBP3-211ENST00000528787 HSCBQ8IWL3 235 aa9.24□□□□□ -0.93
SSBP3-211ENST00000528787 TRIM22Q8IYM9 498 aa9.24□□□□□ -0.93
SSBP3-211ENST00000528787 ZNF654Q8IZM8 581 aa9.24□□□□□ -0.93
SSBP3-211ENST00000528787 PRPF38AQ8NAV1 312 aaKnown RBP9.24□□□□□ -0.93
SSBP3-211ENST00000528787 IGDCC4Q8TDY8 1250 aa9.24□□□□□ -0.93
SSBP3-211ENST00000528787 WASF1Q92558 559 aa9.24□□□□□ -0.93
SSBP3-211ENST00000528787 PARK7Q99497 189 aaKnown RBP9.24□□□□□ -0.93
SSBP3-211ENST00000528787 SLKQ9H2G2 1235 aaPredicted RBP9.24□□□□□ -0.93
SSBP3-211ENST00000528787 LY9Q9HBG7 655 aa9.24□□□□□ -0.93
SSBP3-211ENST00000528787 IL17RBQ9NRM6 502 aa9.24□□□□□ -0.93
SSBP3-211ENST00000528787 ISY1Q9ULR0 285 aaKnown RBP9.24□□□□□ -0.93
SSBP3-211ENST00000528787 AGTPBP1Q9UPW5 1226 aa9.24□□□□□ -0.93
SSBP3-211ENST00000528787 LOC285556D6RIA3 1793 aa9.24□□□□□ -0.93
SSBP3-211ENST00000528787 TESPA1A2RU30 521 aaPredicted RBP9.23□□□□□ -0.93
SSBP3-211ENST00000528787 XBP1P17861 261 aa9.23□□□□□ -0.93
SSBP3-211ENST00000528787 GUCY1A2P33402 732 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms