RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 P2RX7Q99572 595 aaKnown RBP17.5■□□□□ 0.39
USP4-212ENST00000486549 USP17L15C9J2P7 530 aa17.49■□□□□ 0.39
USP4-212ENST00000486549 USP17L13C9JLJ4 530 aa17.49■□□□□ 0.39
USP4-212ENST00000486549 USP17L11C9JVI0 530 aa17.49■□□□□ 0.39
USP4-212ENST00000486549 USP17L18D6R9N7 530 aa17.49■□□□□ 0.39
USP4-212ENST00000486549 USP17L22D6RA61 530 aa17.49■□□□□ 0.39
USP4-212ENST00000486549 USP17L17D6RBQ6 530 aa17.49■□□□□ 0.39
USP4-212ENST00000486549 USP17L19D6RCP7 530 aa17.49■□□□□ 0.39
USP4-212ENST00000486549 USP17L20D6RJB6 530 aa17.49■□□□□ 0.39
USP4-212ENST00000486549 ZNF213O14771 459 aa17.49■□□□□ 0.39
USP4-212ENST00000486549 USP17L24Q0WX57 530 aa17.49■□□□□ 0.39
USP4-212ENST00000486549 KIAA1755Q5JYT7 1200 aa17.49■□□□□ 0.39
USP4-212ENST00000486549 TBC1D10CQ8IV04 446 aa17.49■□□□□ 0.39
USP4-212ENST00000486549 NEDD1Q8NHV4 660 aa17.49■□□□□ 0.39
USP4-212ENST00000486549 CEP95Q96GE4 821 aa17.49■□□□□ 0.39
USP4-212ENST00000486549 TANGO6Q9C0B7 1094 aa17.49■□□□□ 0.39
USP4-212ENST00000486549 NBPF3Q9H094 633 aa17.49■□□□□ 0.39
USP4-212ENST00000486549 VCPKMTQ9H867 229 aa17.49■□□□□ 0.39
USP4-212ENST00000486549 PLIN4Q96Q06 1357 aa17.49■□□□□ 0.39
USP4-212ENST00000486549 IGKV6D-41A0A0C4DH26 115 aa17.48■□□□□ 0.39
USP4-212ENST00000486549 SGSM2O43147 1006 aa17.48■□□□□ 0.39
USP4-212ENST00000486549 HOXD10P28358 340 aa17.48■□□□□ 0.39
USP4-212ENST00000486549 GCLCP48506 637 aaPredicted RBP17.48■□□□□ 0.39
USP4-212ENST00000486549 SOX10P56693 466 aa17.48■□□□□ 0.39
USP4-212ENST00000486549 HERVK_113P62684 666 aa17.48■□□□□ 0.39
USP4-212ENST00000486549 IMMTQ16891 758 aaKnown RBP17.48■□□□□ 0.39
USP4-212ENST00000486549 AKNAD1Q5T1N1 836 aa17.48■□□□□ 0.39
USP4-212ENST00000486549 MFSD6Q6ZSS7 791 aa17.48■□□□□ 0.39
USP4-212ENST00000486549 GOPCQ9HD26 462 aa17.48■□□□□ 0.39
USP4-212ENST00000486549 NYAP2Q9P242 653 aa17.48■□□□□ 0.39
USP4-212ENST00000486549 CLIP2Q9UDT6 1046 aa17.48■□□□□ 0.39
USP4-212ENST00000486549 ORC4O43929 436 aa17.47■□□□□ 0.39
USP4-212ENST00000486549 PEX10O60683 326 aa17.47■□□□□ 0.39
USP4-212ENST00000486549 CTGFP29279 349 aa17.47■□□□□ 0.39
USP4-212ENST00000486549 PSMC4P43686 418 aa17.47■□□□□ 0.39
USP4-212ENST00000486549 PTH1RQ03431 593 aa17.47■□□□□ 0.39
USP4-212ENST00000486549 SAMD1Q6SPF0 538 aaPredicted RBP17.47■□□□□ 0.39
USP4-212ENST00000486549 CATSPERGQ6ZRH7 1159 aa17.47■□□□□ 0.39
USP4-212ENST00000486549 LRRC47Q8N1G4 583 aaKnown RBP17.47■□□□□ 0.39
USP4-212ENST00000486549 STAG1Q8WVM7 1258 aa17.47■□□□□ 0.39
USP4-212ENST00000486549 LPAR1Q92633 364 aa17.47■□□□□ 0.39
USP4-212ENST00000486549 PAGR1Q9BTK6 254 aa17.47■□□□□ 0.39
USP4-212ENST00000486549 MTMR4Q9NYA4 1195 aa17.47■□□□□ 0.39
USP4-212ENST00000486549 CTNNA3Q9UI47 895 aa17.47■□□□□ 0.39
USP4-212ENST00000486549 NEDD4P46934 1319 aa17.47■□□□□ 0.39
USP4-212ENST00000486549 NMT2O60551 498 aa17.46■□□□□ 0.39
USP4-212ENST00000486549 FMNL1O95466 1100 aaPredicted RBP17.46■□□□□ 0.39
USP4-212ENST00000486549 TTLL1O95922 423 aa17.46■□□□□ 0.39
USP4-212ENST00000486549 FGRP09769 529 aa17.46■□□□□ 0.39
USP4-212ENST00000486549 FAM110CQ1W6H9 321 aa17.46■□□□□ 0.39
USP4-212ENST00000486549 ARMC5Q96C12 935 aa17.46■□□□□ 0.39
USP4-212ENST00000486549 RNF41Q9H4P4 317 aaPredicted RBP17.46■□□□□ 0.39
USP4-212ENST00000486549 STX8Q9UNK0 236 aa17.46■□□□□ 0.39
USP4-212ENST00000486549 PARP14Q460N5 1801 aa17.46■□□□□ 0.39
USP4-212ENST00000486549 WDR46O15213 610 aaKnown RBP17.45■□□□□ 0.38
USP4-212ENST00000486549 FCGRTP55899 365 aa17.45■□□□□ 0.38
USP4-212ENST00000486549 TRIM47Q96LD4 638 aa17.45■□□□□ 0.38
USP4-212ENST00000486549 ESYT1Q9BSJ8 1104 aa17.45■□□□□ 0.38
USP4-212ENST00000486549 IL17RBQ9NRM6 502 aa17.45■□□□□ 0.38
USP4-212ENST00000486549 CDC45O75419 566 aa17.44■□□□□ 0.38
USP4-212ENST00000486549 FLOT1O75955 427 aa17.44■□□□□ 0.38
USP4-212ENST00000486549 SLC9C1Q4G0N8 1177 aa17.44■□□□□ 0.38
USP4-212ENST00000486549 FAM83BQ5T0W9 1011 aa17.44■□□□□ 0.38
USP4-212ENST00000486549 KIAA1211Q6ZU35 1233 aa17.44■□□□□ 0.38
USP4-212ENST00000486549 GTF3C2Q8WUA4 911 aaPredicted RBP17.44■□□□□ 0.38
USP4-212ENST00000486549 CHMP4CQ96CF2 233 aa17.44■□□□□ 0.38
USP4-212ENST00000486549 NUP88Q99567 741 aaPredicted RBP17.44■□□□□ 0.38
USP4-212ENST00000486549 TXNRD2Q9NNW7 524 aa17.44■□□□□ 0.38
USP4-212ENST00000486549 U3KPZ7 1027 aaPredicted RBP17.44■□□□□ 0.38
USP4-212ENST00000486549 RLFQ13129 1914 aa17.44■□□□□ 0.38
USP4-212ENST00000486549 SPDYE16A6NNV3 312 aaPredicted RBP17.43■□□□□ 0.38
USP4-212ENST00000486549 F5H6K3 240 aa17.43■□□□□ 0.38
USP4-212ENST00000486549 TNPO2O14787 897 aaKnown RBP17.43■□□□□ 0.38
USP4-212ENST00000486549 NDUFB10O96000 172 aa17.43■□□□□ 0.38
USP4-212ENST00000486549 PCP11498 1178 aaKnown RBP17.43■□□□□ 0.38
USP4-212ENST00000486549 KLRC3Q07444 240 aa17.43■□□□□ 0.38
USP4-212ENST00000486549 CASC1Q6TDU7 716 aa17.43■□□□□ 0.38
USP4-212ENST00000486549 GPRC5AQ8NFJ5 357 aa17.43■□□□□ 0.38
USP4-212ENST00000486549 NKX2-3Q8TAU0 364 aa17.43■□□□□ 0.38
USP4-212ENST00000486549 ESR2Q92731 530 aa17.43■□□□□ 0.38
USP4-212ENST00000486549 TMEM106CQ9BVX2 250 aa17.43■□□□□ 0.38
USP4-212ENST00000486549 RBPJLQ9UBG7 517 aa17.43■□□□□ 0.38
USP4-212ENST00000486549 MORF4L1Q9UBU8 362 aa17.43■□□□□ 0.38
USP4-212ENST00000486549 ISY1Q9ULR0 285 aaKnown RBP17.43■□□□□ 0.38
USP4-212ENST00000486549 A0A0G2JMZ2 1700 aa17.43■□□□□ 0.38
USP4-212ENST00000486549 B4E1Z4 1266 aa17.42■□□□□ 0.38
USP4-212ENST00000486549 ERVK-9P63128 1117 aa17.42■□□□□ 0.38
USP4-212ENST00000486549 ERVK-24P63145 666 aa17.42■□□□□ 0.38
USP4-212ENST00000486549 COG2Q14746 738 aa17.42■□□□□ 0.38
USP4-212ENST00000486549 PPP4R3BQ5MIZ7 849 aa17.42■□□□□ 0.38
USP4-212ENST00000486549 POTEEQ6S8J3 1075 aa17.42■□□□□ 0.38
USP4-212ENST00000486549 MKL1Q969V6 931 aa17.42■□□□□ 0.38
USP4-212ENST00000486549 ZKSCAN3Q9BRR0 538 aa17.42■□□□□ 0.38
USP4-212ENST00000486549 ANO2Q9NQ90 1003 aa17.42■□□□□ 0.38
USP4-212ENST00000486549 MTMR7Q9Y216 660 aa17.42■□□□□ 0.38
USP4-212ENST00000486549 PTCH2Q9Y6C5 1203 aa17.42■□□□□ 0.38
USP4-212ENST00000486549 MYPNQ86TC9 1320 aa17.42■□□□□ 0.38
USP4-212ENST00000486549 COL11A1P12107 1806 aaPredicted RBP17.42■□□□□ 0.38
USP4-212ENST00000486549 KDM4AO75164 1064 aa17.41■□□□□ 0.38
USP4-212ENST00000486549 CNMDO75829 334 aa17.41■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms