RNA–Protein interactions for RNA: ENST00000583344.1

SMCHD1-208, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 738 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-208ENST00000583344 UPK3BL2E5RIL1 263 aa7.54□□□□□ -1.2
SMCHD1-208ENST00000583344 PLCG1P19174 1290 aa7.54□□□□□ -1.2
SMCHD1-208ENST00000583344 TAGLNQ01995 201 aaKnown RBP7.54□□□□□ -1.2
SMCHD1-208ENST00000583344 TMEM67Q5HYA8 995 aa7.54□□□□□ -1.2
SMCHD1-208ENST00000583344 RALGPS1Q5JS13 557 aa7.54□□□□□ -1.2
SMCHD1-208ENST00000583344 TMC4Q7Z404 712 aa7.54□□□□□ -1.2
SMCHD1-208ENST00000583344 PPP1R13LQ8WUF5 828 aa7.54□□□□□ -1.2
SMCHD1-208ENST00000583344 FBXO33Q7Z6M2 555 aa7.53□□□□□ -1.2
SMCHD1-208ENST00000583344 TTC6Q86TZ1 520 aa7.53□□□□□ -1.2
SMCHD1-208ENST00000583344 FAM13CQ8NE31 585 aa7.53□□□□□ -1.2
SMCHD1-208ENST00000583344 PIWIL2Q8TC59 973 aaKnown RBP7.53□□□□□ -1.2
SMCHD1-208ENST00000583344 CEP131Q9UPN4 1083 aa7.53□□□□□ -1.2
SMCHD1-208ENST00000583344 USP31Q70CQ4 1352 aa7.53□□□□□ -1.2
SMCHD1-208ENST00000583344 CILPO75339 1184 aa7.52□□□□□ -1.21
SMCHD1-208ENST00000583344 BPNT1O95861 308 aa7.52□□□□□ -1.21
SMCHD1-208ENST00000583344 F13A1P00488 732 aa7.52□□□□□ -1.21
SMCHD1-208ENST00000583344 PF4P02776 101 aa7.52□□□□□ -1.21
SMCHD1-208ENST00000583344 ERVFC1P60507 584 aa7.52□□□□□ -1.21
SMCHD1-208ENST00000583344 CAMK2GQ13555 558 aaPredicted RBP7.52□□□□□ -1.21
SMCHD1-208ENST00000583344 LCE1DQ5T752 114 aa7.52□□□□□ -1.21
SMCHD1-208ENST00000583344 CREG2Q8IUH2 290 aa7.52□□□□□ -1.21
SMCHD1-208ENST00000583344 CYB5D2Q8WUJ1 264 aa7.52□□□□□ -1.21
SMCHD1-208ENST00000583344 CRELD1Q96HD1 420 aa7.52□□□□□ -1.21
SMCHD1-208ENST00000583344 DUSP15Q9H1R2 295 aaPredicted RBP7.52□□□□□ -1.21
SMCHD1-208ENST00000583344 FAM221AA4D161 298 aa7.51□□□□□ -1.21
SMCHD1-208ENST00000583344 TPP2P29144 1249 aaPredicted RBP7.51□□□□□ -1.21
SMCHD1-208ENST00000583344 HK2P52789 917 aa7.51□□□□□ -1.21
SMCHD1-208ENST00000583344 LMNB2Q03252 620 aa7.51□□□□□ -1.21
SMCHD1-208ENST00000583344 TMPRSS7Q7RTY8 843 aa7.51□□□□□ -1.21
SMCHD1-208ENST00000583344 RHOVQ96L33 236 aa7.51□□□□□ -1.21
SMCHD1-208ENST00000583344 DIRC2Q96SL1 478 aa7.51□□□□□ -1.21
SMCHD1-208ENST00000583344 LRRN2O75325 713 aa7.5□□□□□ -1.21
SMCHD1-208ENST00000583344 GAB4Q2WGN9 574 aa7.5□□□□□ -1.21
SMCHD1-208ENST00000583344 SPOCD1Q6ZMY3 1216 aa7.5□□□□□ -1.21
SMCHD1-208ENST00000583344 CCDC84Q86UT8 332 aaPredicted RBP7.5□□□□□ -1.21
SMCHD1-208ENST00000583344 DTWD2Q8NBA8 298 aa7.5□□□□□ -1.21
SMCHD1-208ENST00000583344 GATAD2BQ8WXI9 593 aa7.5□□□□□ -1.21
SMCHD1-208ENST00000583344 CCDC120Q96HB5 630 aa7.5□□□□□ -1.21
SMCHD1-208ENST00000583344 ADAMTS10Q9H324 1103 aa7.5□□□□□ -1.21
SMCHD1-208ENST00000583344 NSUN3Q9H649 340 aaKnown RBP7.5□□□□□ -1.21
SMCHD1-208ENST00000583344 KCNK12Q9HB15 430 aa7.5□□□□□ -1.21
SMCHD1-208ENST00000583344 VTI1BQ9UEU0 232 aa7.5□□□□□ -1.21
SMCHD1-208ENST00000583344 KLHL3Q9UH77 587 aa7.5□□□□□ -1.21
SMCHD1-208ENST00000583344 TMEM59LQ9UK28 342 aa7.5□□□□□ -1.21
SMCHD1-208ENST00000583344 GRIN3BO60391 1043 aa7.49□□□□□ -1.21
SMCHD1-208ENST00000583344 SORBS3O60504 671 aa7.49□□□□□ -1.21
SMCHD1-208ENST00000583344 PDIA4P13667 645 aaKnown RBP7.49□□□□□ -1.21
SMCHD1-208ENST00000583344 RAC2P15153 192 aa7.49□□□□□ -1.21
SMCHD1-208ENST00000583344 GBP2P32456 591 aaPredicted RBP7.49□□□□□ -1.21
SMCHD1-208ENST00000583344 FAM160A1Q05DH4 1040 aa7.49□□□□□ -1.21
SMCHD1-208ENST00000583344 TMEM201Q5SNT2 666 aa7.49□□□□□ -1.21
SMCHD1-208ENST00000583344 SYDE1Q6ZW31 735 aaPredicted RBP7.49□□□□□ -1.21
SMCHD1-208ENST00000583344 CILP2Q8IUL8 1156 aa7.49□□□□□ -1.21
SMCHD1-208ENST00000583344 BHLHE22Q8NFJ8 381 aaPredicted RBP7.49□□□□□ -1.21
SMCHD1-208ENST00000583344 ABHD4Q8TB40 342 aa7.49□□□□□ -1.21
SMCHD1-208ENST00000583344 REV1Q9UBZ9 1251 aa7.49□□□□□ -1.21
SMCHD1-208ENST00000583344 POLR3KQ9Y2Y1 108 aaPredicted RBP7.49□□□□□ -1.21
SMCHD1-208ENST00000583344 TRHRP34981 398 aaPredicted RBP7.48□□□□□ -1.21
SMCHD1-208ENST00000583344 RAP1GAPP47736 663 aa7.48□□□□□ -1.21
SMCHD1-208ENST00000583344 YARSP54577 528 aaKnown RBP7.48□□□□□ -1.21
SMCHD1-208ENST00000583344 TMEM74Q96NL1 305 aa7.48□□□□□ -1.21
SMCHD1-208ENST00000583344 TRIT1Q9H3H1 467 aaKnown RBP7.48□□□□□ -1.21
SMCHD1-208ENST00000583344 DUSP13Q9UII6 198 aa7.48□□□□□ -1.21
SMCHD1-208ENST00000583344 CHURC1-FNTBB4DL54 471 aa7.47□□□□□ -1.21
SMCHD1-208ENST00000583344 DNAJA2O60884 412 aa7.47□□□□□ -1.21
SMCHD1-208ENST00000583344 TSPAN15O95858 294 aa7.47□□□□□ -1.21
SMCHD1-208ENST00000583344 SRFP11831 508 aa7.47□□□□□ -1.21
SMCHD1-208ENST00000583344 TNNI2P48788 182 aa7.47□□□□□ -1.21
SMCHD1-208ENST00000583344 EGR3Q06889 387 aa7.47□□□□□ -1.21
SMCHD1-208ENST00000583344 SNAP47Q5SQN1 464 aa7.47□□□□□ -1.21
SMCHD1-208ENST00000583344 DIEXFQ68CQ4 756 aaKnown RBP7.47□□□□□ -1.21
SMCHD1-208ENST00000583344 FBXO27Q8NI29 283 aa7.47□□□□□ -1.21
SMCHD1-208ENST00000583344 BAHD1Q8TBE0 780 aaPredicted RBP7.47□□□□□ -1.21
SMCHD1-208ENST00000583344 GPR62Q9BZJ7 368 aa7.47□□□□□ -1.21
SMCHD1-208ENST00000583344 MRS2Q9HD23 443 aa7.47□□□□□ -1.21
SMCHD1-208ENST00000583344 GPATCH2Q9NW75 528 aa7.47□□□□□ -1.21
SMCHD1-208ENST00000583344 MINDY4BA8MYZ0 360 aa7.46□□□□□ -1.22
SMCHD1-208ENST00000583344 HTR3BO95264 441 aa7.46□□□□□ -1.22
SMCHD1-208ENST00000583344 HPXP02790 462 aa7.46□□□□□ -1.22
SMCHD1-208ENST00000583344 KRT1P04264 644 aa7.46□□□□□ -1.22
SMCHD1-208ENST00000583344 LCE4AQ5TA78 99 aa7.46□□□□□ -1.22
SMCHD1-208ENST00000583344 TSPYL5Q86VY4 417 aaPredicted RBP7.46□□□□□ -1.22
SMCHD1-208ENST00000583344 RELL1Q8IUW5 271 aa7.46□□□□□ -1.22
SMCHD1-208ENST00000583344 SLFN12Q8IYM2 578 aa7.46□□□□□ -1.22
SMCHD1-208ENST00000583344 GOLM1Q8NBJ4 401 aa7.46□□□□□ -1.22
SMCHD1-208ENST00000583344 RNF141Q8WVD5 230 aa7.46□□□□□ -1.22
SMCHD1-208ENST00000583344 MYLIPQ8WY64 445 aa7.46□□□□□ -1.22
SMCHD1-208ENST00000583344 PPP1R16BQ96T49 567 aa7.46□□□□□ -1.22
SMCHD1-208ENST00000583344 KCNH3Q9ULD8 1083 aa7.46□□□□□ -1.22
SMCHD1-208ENST00000583344 PCDHA11Q9Y5I1 949 aa7.46□□□□□ -1.22
SMCHD1-208ENST00000583344 PRR36Q9H6K5 1346 aa7.46□□□□□ -1.22
SMCHD1-208ENST00000583344 C1QTNF9P0C862 333 aa7.45□□□□□ -1.22
SMCHD1-208ENST00000583344 LTKP29376 864 aa7.45□□□□□ -1.22
SMCHD1-208ENST00000583344 FBXO15Q8NCQ5 510 aaPredicted RBP7.45□□□□□ -1.22
SMCHD1-208ENST00000583344 KREMEN1Q96MU8 473 aa7.45□□□□□ -1.22
SMCHD1-208ENST00000583344 RSRP1Q9BUV0 290 aa7.45□□□□□ -1.22
SMCHD1-208ENST00000583344 SHISA3A0PJX4 238 aa7.44□□□□□ -1.22
SMCHD1-208ENST00000583344 TLR3O15455 904 aaKnown RBP7.44□□□□□ -1.22
SMCHD1-208ENST00000583344 ZGLP1P0C6A0 271 aa7.44□□□□□ -1.22
SMCHD1-208ENST00000583344 GARTP22102 1010 aa7.44□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms