RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 FXR1P51114 621 aaKnown RBP eCLIP16.39■□□□□ 0.21
VPS35-210ENST00000568784 IQCA1Q86XH1 822 aa16.39■□□□□ 0.21
VPS35-210ENST00000568784 CNGA4Q8IV77 575 aa16.39■□□□□ 0.21
VPS35-210ENST00000568784 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.39■□□□□ 0.21
VPS35-210ENST00000568784 ISCA1Q9BUE6 129 aa16.39■□□□□ 0.21
VPS35-210ENST00000568784 RNF41Q9H4P4 317 aaPredicted RBP16.39■□□□□ 0.21
VPS35-210ENST00000568784 RIPOR2Q9Y4F9 1068 aa16.39■□□□□ 0.21
VPS35-210ENST00000568784 NOM1Q5C9Z4 860 aaKnown RBP16.39■□□□□ 0.21
VPS35-210ENST00000568784 DZIP3Q86Y13 1208 aaKnown RBP16.39■□□□□ 0.21
VPS35-210ENST00000568784 CRACR2BQ8N4Y2 399 aaPredicted RBP16.39■□□□□ 0.21
VPS35-210ENST00000568784 PSMB7Q99436 277 aa16.39■□□□□ 0.21
VPS35-210ENST00000568784 MAGEC2Q9UBF1 373 aaPredicted RBP16.39■□□□□ 0.21
VPS35-210ENST00000568784 H3BQF6 201 aa16.39■□□□□ 0.21
VPS35-210ENST00000568784 IGHMBP2P38935 993 aaKnown RBP16.39■□□□□ 0.21
VPS35-210ENST00000568784 PTGDRQ13258 359 aa16.39■□□□□ 0.21
VPS35-210ENST00000568784 CTAGE1Q96RT6 745 aa16.39■□□□□ 0.21
VPS35-210ENST00000568784 ACBD3Q9H3P7 528 aa16.39■□□□□ 0.21
VPS35-210ENST00000568784 JADE2Q9NQC1 790 aa16.39■□□□□ 0.21
VPS35-210ENST00000568784 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.39■□□□□ 0.21
VPS35-210ENST00000568784 CD44P16070 742 aaKnown RBP16.38■□□□□ 0.21
VPS35-210ENST00000568784 MRPS25P82663 173 aaKnown RBP16.38■□□□□ 0.21
VPS35-210ENST00000568784 MORC3Q14149 939 aa16.38■□□□□ 0.21
VPS35-210ENST00000568784 NLRP10Q86W26 655 aa16.38■□□□□ 0.21
VPS35-210ENST00000568784 CTCFLQ8NI51 663 aaPredicted RBP16.38■□□□□ 0.21
VPS35-210ENST00000568784 LPIN2Q92539 896 aa16.38■□□□□ 0.21
VPS35-210ENST00000568784 TRIM10Q9UDY6 481 aa16.38■□□□□ 0.21
VPS35-210ENST00000568784 ZBTB1Q9Y2K1 713 aa16.38■□□□□ 0.21
VPS35-210ENST00000568784 PLEKHA8P1O95397 391 aa16.38■□□□□ 0.21
VPS35-210ENST00000568784 ABL1P00519 1130 aa16.38■□□□□ 0.21
VPS35-210ENST00000568784 TMEM139Q8IV31 216 aa16.38■□□□□ 0.21
VPS35-210ENST00000568784 TRIM47Q96LD4 638 aa16.38■□□□□ 0.21
VPS35-210ENST00000568784 TMEM51Q9NW97 253 aa16.38■□□□□ 0.21
VPS35-210ENST00000568784 DNAJC21Q5F1R6 531 aaKnown RBP16.38■□□□□ 0.21
VPS35-210ENST00000568784 TTC38Q5R3I4 469 aa16.38■□□□□ 0.21
VPS35-210ENST00000568784 CCDC148Q8NFR7 591 aa16.38■□□□□ 0.21
VPS35-210ENST00000568784 PAGE5Q96GU1 130 aa16.38■□□□□ 0.21
VPS35-210ENST00000568784 SRPRBQ9Y5M8 271 aaKnown RBP16.38■□□□□ 0.21
VPS35-210ENST00000568784 MACROD2A1Z1Q3 448 aa16.37■□□□□ 0.21
VPS35-210ENST00000568784 CCDC151A5D8V7 595 aa16.37■□□□□ 0.21
VPS35-210ENST00000568784 FAM47AQ5JRC9 791 aa16.37■□□□□ 0.21
VPS35-210ENST00000568784 PNKPQ96T60 521 aa16.37■□□□□ 0.21
VPS35-210ENST00000568784 FUT8Q9BYC5 575 aa16.37■□□□□ 0.21
VPS35-210ENST00000568784 SRGAP2O75044 1071 aa16.37■□□□□ 0.21
VPS35-210ENST00000568784 PPARAQ07869 468 aa16.37■□□□□ 0.21
VPS35-210ENST00000568784 CCDC122Q5T0U0 273 aa16.37■□□□□ 0.21
VPS35-210ENST00000568784 HDAC6Q9UBN7 1215 aa16.37■□□□□ 0.21
VPS35-210ENST00000568784 GSG1L2A8MUP6 293 aa16.37■□□□□ 0.21
VPS35-210ENST00000568784 GIGYF2Q6Y7W6 1299 aaKnown RBP16.37■□□□□ 0.21
VPS35-210ENST00000568784 NELFBQ8WX92 580 aa16.37■□□□□ 0.21
VPS35-210ENST00000568784 CRACR2AQ9BSW2 395 aa16.37■□□□□ 0.21
VPS35-210ENST00000568784 FOXP1Q9H334 677 aaPredicted RBP16.37■□□□□ 0.21
VPS35-210ENST00000568784 KCND1Q9NSA2 647 aa16.37■□□□□ 0.21
VPS35-210ENST00000568784 MFAP3LO75121 409 aa16.36■□□□□ 0.21
VPS35-210ENST00000568784 TRIM21P19474 475 aaKnown RBP16.36■□□□□ 0.21
VPS35-210ENST00000568784 LIFRP42702 1097 aa16.36■□□□□ 0.21
VPS35-210ENST00000568784 VSNL1P62760 191 aa16.36■□□□□ 0.21
VPS35-210ENST00000568784 RASGRP4Q8TDF6 673 aa16.36■□□□□ 0.21
VPS35-210ENST00000568784 ERVV-2B6SEH9 535 aa16.36■□□□□ 0.21
VPS35-210ENST00000568784 STAT6P42226 847 aa16.36■□□□□ 0.21
VPS35-210ENST00000568784 NR1I3Q14994 352 aa16.36■□□□□ 0.21
VPS35-210ENST00000568784 BRD3Q15059 726 aa16.36■□□□□ 0.21
VPS35-210ENST00000568784 EARS2Q5JPH6 523 aaKnown RBP16.36■□□□□ 0.21
VPS35-210ENST00000568784 IQUBQ8NA54 791 aa16.36■□□□□ 0.21
VPS35-210ENST00000568784 GDAQ9Y2T3 454 aa16.36■□□□□ 0.21
VPS35-210ENST00000568784 KDM3BQ7LBC6 1761 aa16.36■□□□□ 0.21
VPS35-210ENST00000568784 ZNHIT6Q9NWK9 470 aaKnown RBP16.36■□□□□ 0.21
VPS35-210ENST00000568784 MED1Q15648 1581 aaPredicted RBP16.36■□□□□ 0.21
VPS35-210ENST00000568784 ARHGAP23Q9P227 1491 aa16.36■□□□□ 0.21
VPS35-210ENST00000568784 PDE8AO60658 829 aa16.35■□□□□ 0.21
VPS35-210ENST00000568784 KRT31Q15323 416 aa16.35■□□□□ 0.21
VPS35-210ENST00000568784 ENOX2Q16206 610 aaKnown RBP16.35■□□□□ 0.21
VPS35-210ENST00000568784 TMTC2Q8N394 836 aa16.35■□□□□ 0.21
VPS35-210ENST00000568784 GBP3Q9H0R5 595 aa16.35■□□□□ 0.21
VPS35-210ENST00000568784 RASSF4Q9H2L5 321 aa16.35■□□□□ 0.21
VPS35-210ENST00000568784 A0A087X0B3 334 aa16.35■□□□□ 0.21
VPS35-210ENST00000568784 MAGEB6P1A0A0J9YX57 407 aa16.35■□□□□ 0.21
VPS35-210ENST00000568784 ACTN4O43707 911 aaKnown RBP16.35■□□□□ 0.21
VPS35-210ENST00000568784 GYG1P46976 350 aa16.35■□□□□ 0.21
VPS35-210ENST00000568784 PAK1Q13153 545 aa16.35■□□□□ 0.21
VPS35-210ENST00000568784 SGMS1Q86VZ5 419 aa16.35■□□□□ 0.21
VPS35-210ENST00000568784 GSPT2Q8IYD1 628 aaKnown RBP16.35■□□□□ 0.21
VPS35-210ENST00000568784 TRIM49BA6NDI0 452 aa16.35■□□□□ 0.21
VPS35-210ENST00000568784 ERCC5P28715 1186 aaPredicted RBP16.35■□□□□ 0.21
VPS35-210ENST00000568784 DYNLL1P63167 89 aaKnown RBP16.35■□□□□ 0.21
VPS35-210ENST00000568784 NOA1Q8NC60 698 aaKnown RBP16.35■□□□□ 0.21
VPS35-210ENST00000568784 SMARCC1Q92922 1105 aaPredicted RBP16.35■□□□□ 0.21
VPS35-210ENST00000568784 KIFC2Q96AC6 838 aa16.35■□□□□ 0.21
VPS35-210ENST00000568784 CHP1Q99653 195 aa16.35■□□□□ 0.21
VPS35-210ENST00000568784 LUC7L2Q9Y383 392 aaKnown RBP16.35■□□□□ 0.21
VPS35-210ENST00000568784 GNL3LQ9NVN8 582 aaKnown RBP16.35■□□□□ 0.21
VPS35-210ENST00000568784 TTF2Q9UNY4 1162 aaKnown RBP16.35■□□□□ 0.21
VPS35-210ENST00000568784 MAP3K15Q6ZN16 1313 aa16.34■□□□□ 0.21
VPS35-210ENST00000568784 KCNJ18B7U540 433 aa16.34■□□□□ 0.21
VPS35-210ENST00000568784 POTEB2H3BUK9 544 aa16.34■□□□□ 0.21
VPS35-210ENST00000568784 CUL4BQ13620 913 aa16.34■□□□□ 0.21
VPS35-210ENST00000568784 KCNJ12Q14500 433 aa16.34■□□□□ 0.21
VPS35-210ENST00000568784 CTR9Q6PD62 1173 aa16.34■□□□□ 0.21
VPS35-210ENST00000568784 TRIML1Q8N9V2 468 aa16.34■□□□□ 0.21
VPS35-210ENST00000568784 PIGBQ92521 554 aa16.34■□□□□ 0.21
VPS35-210ENST00000568784 SOS2Q07890 1332 aaPredicted RBP16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms