RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 ATP13A1Q9HD20 1204 aa5.12□□□□□ -1.59
VPS35-207ENST00000568191 SEMA3GQ9NS98 782 aa5.12□□□□□ -1.59
VPS35-207ENST00000568191 ROBO2Q9HCK4 1378 aa5.12□□□□□ -1.59
VPS35-207ENST00000568191 MINDY4BA8MYZ0 360 aa5.11□□□□□ -1.59
VPS35-207ENST00000568191 PRR33A8MZF0 331 aa5.11□□□□□ -1.59
VPS35-207ENST00000568191 CTSHP09668 335 aa5.11□□□□□ -1.59
VPS35-207ENST00000568191 GDNFP39905 211 aa5.11□□□□□ -1.59
VPS35-207ENST00000568191 CWF19L2Q2TBE0 894 aaKnown RBP5.11□□□□□ -1.59
VPS35-207ENST00000568191 TMEM67Q5HYA8 995 aa5.11□□□□□ -1.59
VPS35-207ENST00000568191 TMEM201Q5SNT2 666 aa5.11□□□□□ -1.59
VPS35-207ENST00000568191 MPZL3Q6UWV2 235 aa5.11□□□□□ -1.59
VPS35-207ENST00000568191 BNC2Q6ZN30 1099 aaPredicted RBP5.11□□□□□ -1.59
VPS35-207ENST00000568191 ACSF2Q96CM8 615 aaPredicted RBP5.11□□□□□ -1.59
VPS35-207ENST00000568191 KIRREL1Q96J84 757 aa5.11□□□□□ -1.59
VPS35-207ENST00000568191 ASCC2Q9H1I8 757 aaPredicted RBP5.11□□□□□ -1.59
VPS35-207ENST00000568191 PRDM7Q9NQW5 492 aa5.11□□□□□ -1.59
VPS35-207ENST00000568191 CTNND2Q9UQB3 1225 aa5.11□□□□□ -1.59
VPS35-207ENST00000568191 ST14Q9Y5Y6 855 aa5.11□□□□□ -1.59
VPS35-207ENST00000568191 LRRC10BA6NIK2 292 aa5.1□□□□□ -1.59
VPS35-207ENST00000568191 F13A1P00488 732 aa5.1□□□□□ -1.59
VPS35-207ENST00000568191 TNK2Q07912 1038 aa5.1□□□□□ -1.59
VPS35-207ENST00000568191 MPP2Q14168 576 aa5.1□□□□□ -1.59
VPS35-207ENST00000568191 SLFN12Q8IYM2 578 aa5.1□□□□□ -1.59
VPS35-207ENST00000568191 GOLM1Q8NBJ4 401 aa5.1□□□□□ -1.59
VPS35-207ENST00000568191 CCDC74BQ96LY2 380 aa5.1□□□□□ -1.59
VPS35-207ENST00000568191 ALPK1Q96QP1 1244 aa5.1□□□□□ -1.59
VPS35-207ENST00000568191 SUPT16HQ9Y5B9 1047 aaKnown RBP5.1□□□□□ -1.59
VPS35-207ENST00000568191 FAM221AA4D161 298 aa5.09□□□□□ -1.59
VPS35-207ENST00000568191 C8AP07357 584 aa5.09□□□□□ -1.59
VPS35-207ENST00000568191 TPP2P29144 1249 aaPredicted RBP5.09□□□□□ -1.59
VPS35-207ENST00000568191 GBP1P32455 592 aa5.09□□□□□ -1.59
VPS35-207ENST00000568191 HS2ST1Q7LGA3 356 aa5.09□□□□□ -1.59
VPS35-207ENST00000568191 CREG2Q8IUH2 290 aa5.09□□□□□ -1.59
VPS35-207ENST00000568191 PHACTR4Q8IZ21 702 aa5.09□□□□□ -1.59
VPS35-207ENST00000568191 GIPC2Q8TF65 315 aa5.09□□□□□ -1.59
VPS35-207ENST00000568191 RNF141Q8WVD5 230 aa5.09□□□□□ -1.59
VPS35-207ENST00000568191 DHX38Q92620 1227 aaKnown RBP5.09□□□□□ -1.59
VPS35-207ENST00000568191 FAM84AQ96KN4 292 aa5.09□□□□□ -1.59
VPS35-207ENST00000568191 RHOVQ96L33 236 aa5.09□□□□□ -1.59
VPS35-207ENST00000568191 SLAMF8Q9P0V8 285 aa5.09□□□□□ -1.59
VPS35-207ENST00000568191 REV1Q9UBZ9 1251 aa5.09□□□□□ -1.59
VPS35-207ENST00000568191 KLHL3Q9UH77 587 aa5.09□□□□□ -1.59
VPS35-207ENST00000568191 CARMIL2Q6F5E8 1435 aa5.08□□□□□ -1.6
VPS35-207ENST00000568191 PRR36Q9H6K5 1346 aa5.08□□□□□ -1.6
VPS35-207ENST00000568191 F6X3S4 739 aa5.08□□□□□ -1.6
VPS35-207ENST00000568191 HTR3BO95264 441 aa5.08□□□□□ -1.6
VPS35-207ENST00000568191 GLI1P08151 1106 aa5.08□□□□□ -1.6
VPS35-207ENST00000568191 FAM160A1Q05DH4 1040 aa5.08□□□□□ -1.6
VPS35-207ENST00000568191 CLEC16AQ2KHT3 1053 aa5.08□□□□□ -1.6
VPS35-207ENST00000568191 FAM196AQ6ZSG2 479 aa5.08□□□□□ -1.6
VPS35-207ENST00000568191 TTC6Q86TZ1 520 aa5.08□□□□□ -1.6
VPS35-207ENST00000568191 DNAJB8Q8NHS0 232 aa5.08□□□□□ -1.6
VPS35-207ENST00000568191 PPP1R16BQ96T49 567 aa5.08□□□□□ -1.6
VPS35-207ENST00000568191 ASPNQ9BXN1 380 aa5.08□□□□□ -1.6
VPS35-207ENST00000568191 GGT7Q9UJ14 662 aa5.08□□□□□ -1.6
VPS35-207ENST00000568191 CORINQ9Y5Q5 1042 aa5.08□□□□□ -1.6
VPS35-207ENST00000568191 CNTNAP4Q9C0A0 1308 aa5.07□□□□□ -1.6
VPS35-207ENST00000568191 UPK3BL1B0FP48 263 aa5.07□□□□□ -1.6
VPS35-207ENST00000568191 UPK3BL2E5RIL1 263 aa5.07□□□□□ -1.6
VPS35-207ENST00000568191 GRIN3BO60391 1043 aa5.07□□□□□ -1.6
VPS35-207ENST00000568191 LTKP29376 864 aa5.07□□□□□ -1.6
VPS35-207ENST00000568191 EIF4A3P38919 411 aaKnown RBP5.07□□□□□ -1.6
VPS35-207ENST00000568191 RNF4P78317 190 aa5.07□□□□□ -1.6
VPS35-207ENST00000568191 RAD51AP2Q09MP3 1159 aa5.07□□□□□ -1.6
VPS35-207ENST00000568191 FZD5Q13467 585 aa5.07□□□□□ -1.6
VPS35-207ENST00000568191 MLANAQ16655 118 aa5.07□□□□□ -1.6
VPS35-207ENST00000568191 ZNF648Q5T619 568 aaPredicted RBP5.07□□□□□ -1.6
VPS35-207ENST00000568191 TMCO4Q5TGY1 634 aa5.07□□□□□ -1.6
VPS35-207ENST00000568191 REC114Q7Z4M0 266 aa5.07□□□□□ -1.6
VPS35-207ENST00000568191 OXR1Q8N573 874 aa5.07□□□□□ -1.6
VPS35-207ENST00000568191 BHLHE22Q8NFJ8 381 aaPredicted RBP5.07□□□□□ -1.6
VPS35-207ENST00000568191 GPR62Q9BZJ7 368 aa5.07□□□□□ -1.6
VPS35-207ENST00000568191 KBTBD4Q9NVX7 518 aa5.07□□□□□ -1.6
VPS35-207ENST00000568191 DUSP13Q9UII6 198 aa5.07□□□□□ -1.6
VPS35-207ENST00000568191 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.07□□□□□ -1.6
VPS35-207ENST00000568191 RAG1P15918 1043 aa5.06□□□□□ -1.6
VPS35-207ENST00000568191 TAGLNQ01995 201 aaKnown RBP5.06□□□□□ -1.6
VPS35-207ENST00000568191 TSPYL5Q86VY4 417 aaPredicted RBP5.06□□□□□ -1.6
VPS35-207ENST00000568191 SPPL2CQ8IUH8 684 aa5.06□□□□□ -1.6
VPS35-207ENST00000568191 DTWD2Q8NBA8 298 aa5.06□□□□□ -1.6
VPS35-207ENST00000568191 ABHD4Q8TB40 342 aa5.06□□□□□ -1.6
VPS35-207ENST00000568191 MYLIPQ8WY64 445 aa5.06□□□□□ -1.6
VPS35-207ENST00000568191 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP5.06□□□□□ -1.6
VPS35-207ENST00000568191 TMEM59LQ9UK28 342 aa5.06□□□□□ -1.6
VPS35-207ENST00000568191 SSU72P8A0A1W2PR75 194 aa5.05□□□□□ -1.6
VPS35-207ENST00000568191 CHURC1-FNTBB4DL54 471 aa5.05□□□□□ -1.6
VPS35-207ENST00000568191 TLR3O15455 904 aaKnown RBP5.05□□□□□ -1.6
VPS35-207ENST00000568191 EGR3Q06889 387 aa5.05□□□□□ -1.6
VPS35-207ENST00000568191 LRRFIP1Q32MZ4 808 aaKnown RBP5.05□□□□□ -1.6
VPS35-207ENST00000568191 ERMP1Q7Z2K6 904 aa5.05□□□□□ -1.6
VPS35-207ENST00000568191 ENOX1Q8TC92 643 aaKnown RBP5.05□□□□□ -1.6
VPS35-207ENST00000568191 Q96M66 194 aa5.05□□□□□ -1.6
VPS35-207ENST00000568191 KREMEN1Q96MU8 473 aa5.05□□□□□ -1.6
VPS35-207ENST00000568191 LRRC3Q9BY71 257 aa5.05□□□□□ -1.6
VPS35-207ENST00000568191 DUSP15Q9H1R2 295 aaPredicted RBP5.05□□□□□ -1.6
VPS35-207ENST00000568191 DBX1A6NMT0 343 aa5.04□□□□□ -1.6
VPS35-207ENST00000568191 RGS13O14921 159 aa5.04□□□□□ -1.6
VPS35-207ENST00000568191 ESR1P03372 595 aa5.04□□□□□ -1.6
VPS35-207ENST00000568191 MCM4P33991 863 aa5.04□□□□□ -1.6
VPS35-207ENST00000568191 RAP1GAPP47736 663 aa5.04□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms