RNA–Protein interactions for RNA: ENST00000544363.5

CCM2-219, Transcript of CCM2 scaffold protein, humanhuman

TSL 3 BASIC

Gene CCM2, Length 1,620 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-219ENST00000544363 NFKBIBQ15653 356 aa35.5■■■■□ 3.27
CCM2-219ENST00000544363 GPR162Q16538 588 aa35.5■■■■□ 3.27
CCM2-219ENST00000544363 FDPSP14324 419 aaKnown RBP35.5■■■■□ 3.27
CCM2-219ENST00000544363 NOVP48745 357 aa35.5■■■■□ 3.27
CCM2-219ENST00000544363 TATDN1Q6P1N9 297 aa35.5■■■■□ 3.27
CCM2-219ENST00000544363 CEP95Q96GE4 821 aa35.5■■■■□ 3.27
CCM2-219ENST00000544363 STX8Q9UNK0 236 aa35.5■■■■□ 3.27
CCM2-219ENST00000544363 MTMR6Q9Y217 621 aa35.5■■■■□ 3.27
CCM2-219ENST00000544363 FAM196BA6NMK8 535 aa35.49■■■■□ 3.27
CCM2-219ENST00000544363 ZSCAN22P10073 491 aaPredicted RBP35.49■■■■□ 3.27
CCM2-219ENST00000544363 TNNI2P48788 182 aa35.49■■■■□ 3.27
CCM2-219ENST00000544363 FOXD4L5Q5VV16 416 aaPredicted RBP35.49■■■■□ 3.27
CCM2-219ENST00000544363 FOXD4L4Q8WXT5 416 aaPredicted RBP35.49■■■■□ 3.27
CCM2-219ENST00000544363 IGKV6D-41A0A0C4DH26 115 aa35.48■■■■□ 3.27
CCM2-219ENST00000544363 PPFIA3O75145 1194 aa35.48■■■■□ 3.27
CCM2-219ENST00000544363 PNMA1Q8ND90 353 aa35.48■■■■□ 3.27
CCM2-219ENST00000544363 TMEM47Q9BQJ4 181 aa35.48■■■■□ 3.27
CCM2-219ENST00000544363 ORC3Q9UBD5 711 aaPredicted RBP35.48■■■■□ 3.27
CCM2-219ENST00000544363 HERC5Q9UII4 1024 aaKnown RBP35.48■■■■□ 3.27
CCM2-219ENST00000544363 IFNAR1P17181 557 aa35.47■■■■□ 3.27
CCM2-219ENST00000544363 CERKLQ49MI3 558 aaPredicted RBP35.47■■■■□ 3.27
CCM2-219ENST00000544363 CLEC17AQ6ZS10 378 aa35.47■■■■□ 3.27
CCM2-219ENST00000544363 TMEM39BQ9GZU3 492 aa35.47■■■■□ 3.27
CCM2-219ENST00000544363 RBM28Q9NW13 759 aaKnown RBP35.47■■■■□ 3.27
CCM2-219ENST00000544363 TNFAIP1Q13829 316 aa35.46■■■■□ 3.27
CCM2-219ENST00000544363 MTMR4Q9NYA4 1195 aa35.46■■■■□ 3.27
CCM2-219ENST00000544363 VPS37CA5D8V6 355 aaPredicted RBP35.46■■■■□ 3.27
CCM2-219ENST00000544363 GBP4Q96PP9 640 aa35.46■■■■□ 3.27
CCM2-219ENST00000544363 PGAP2Q9UHJ9 254 aa35.46■■■■□ 3.27
CCM2-219ENST00000544363 DDNO94850 711 aaPredicted RBP35.45■■■■□ 3.27
CCM2-219ENST00000544363 MAP3K14Q99558 947 aa35.45■■■■□ 3.27
CCM2-219ENST00000544363 MPHOSPH10O00566 681 aaKnown RBP35.44■■■■□ 3.26
CCM2-219ENST00000544363 GRIN3BO60391 1043 aa35.44■■■■□ 3.26
CCM2-219ENST00000544363 TOP1P11387 765 aaKnown RBP35.44■■■■□ 3.26
CCM2-219ENST00000544363 CTCFLQ8NI51 663 aaPredicted RBP35.44■■■■□ 3.26
CCM2-219ENST00000544363 PHKBQ93100 1093 aa35.44■■■■□ 3.26
CCM2-219ENST00000544363 HACL1Q9UJ83 578 aa35.44■■■■□ 3.26
CCM2-219ENST00000544363 SRCAPQ6ZRS2 3230 aa35.44■■■■□ 3.26
CCM2-219ENST00000544363 UTRNP46939 3433 aa35.44■■■■□ 3.26
CCM2-219ENST00000544363 GREB1LQ9C091 1923 aaPredicted RBP35.44■■■■□ 3.26
CCM2-219ENST00000544363 RASA3Q14644 834 aa35.43■■■■□ 3.26
CCM2-219ENST00000544363 XPO5Q9HAV4 1204 aaKnown RBP eCLIP35.43■■■■□ 3.26
CCM2-219ENST00000544363 EPS15P42566 896 aa35.43■■■■□ 3.26
CCM2-219ENST00000544363 SSRP1Q08945 709 aaKnown RBP35.43■■■■□ 3.26
CCM2-219ENST00000544363 ASTN2O75129 1339 aaPredicted RBP35.42■■■■□ 3.26
CCM2-219ENST00000544363 STK36Q9NRP7 1315 aa35.42■■■■□ 3.26
CCM2-219ENST00000544363 FMNL1O95466 1100 aaPredicted RBP35.42■■■■□ 3.26
CCM2-219ENST00000544363 F13A1P00488 732 aa35.42■■■■□ 3.26
CCM2-219ENST00000544363 PPP4R3BQ5MIZ7 849 aa35.42■■■■□ 3.26
CCM2-219ENST00000544363 TRPM4Q8TD43 1214 aa35.42■■■■□ 3.26
CCM2-219ENST00000544363 H3BQV1 296 aa35.41■■■■□ 3.26
CCM2-219ENST00000544363 TBC1D12O60347 775 aa35.41■■■■□ 3.26
CCM2-219ENST00000544363 IFFO2Q5TF58 517 aa35.41■■■■□ 3.26
CCM2-219ENST00000544363 CDC37L1Q7L3B6 337 aa35.41■■■■□ 3.26
CCM2-219ENST00000544363 BAG4O95429 457 aaKnown RBP35.4■■■■□ 3.26
CCM2-219ENST00000544363 TTLL1O95922 423 aa35.4■■■■□ 3.26
CCM2-219ENST00000544363 KIF5BP33176 963 aa35.4■■■■□ 3.26
CCM2-219ENST00000544363 NBPF11Q86T75 865 aa35.4■■■■□ 3.26
CCM2-219ENST00000544363 CDAN1Q8IWY9 1227 aa35.4■■■■□ 3.26
CCM2-219ENST00000544363 SLC26A6Q9BXS9 759 aa35.4■■■■□ 3.26
CCM2-219ENST00000544363 TRIM22Q8IYM9 498 aa35.39■■■■□ 3.26
CCM2-219ENST00000544363 MCM4P33991 863 aa35.39■■■■□ 3.26
CCM2-219ENST00000544363 GRM4Q14833 912 aa35.39■■■■□ 3.26
CCM2-219ENST00000544363 ABCB5Q2M3G0 1257 aa35.39■■■■□ 3.26
CCM2-219ENST00000544363 TMTC3Q6ZXV5 915 aa35.39■■■■□ 3.26
CCM2-219ENST00000544363 CMTR1Q8N1G2 835 aaKnown RBP35.39■■■■□ 3.26
CCM2-219ENST00000544363 PLEKHA8P1O95397 391 aa35.38■■■■□ 3.25
CCM2-219ENST00000544363 LMOD1P29536 600 aaPredicted RBP35.38■■■■□ 3.25
CCM2-219ENST00000544363 FUT2Q10981 343 aa35.38■■■■□ 3.25
CCM2-219ENST00000544363 TMEM179Q6ZVK1 233 aa35.38■■■■□ 3.25
CCM2-219ENST00000544363 SCAF8Q9UPN6 1271 aaKnown RBP35.38■■■■□ 3.25
CCM2-219ENST00000544363 MAP3K10Q02779 954 aa35.37■■■■□ 3.25
CCM2-219ENST00000544363 CLEC10AQ8IUN9 316 aa35.37■■■■□ 3.25
CCM2-219ENST00000544363 CCDC82Q8N4S0 544 aa35.37■■■■□ 3.25
CCM2-219ENST00000544363 TEPSINQ96N21 525 aa35.37■■■■□ 3.25
CCM2-219ENST00000544363 CLIP2Q9UDT6 1046 aa35.37■■■■□ 3.25
CCM2-219ENST00000544363 GDF11O95390 407 aa35.36■■■■□ 3.25
CCM2-219ENST00000544363 FOSBP53539 338 aa35.36■■■■□ 3.25
CCM2-219ENST00000544363 DPY19L2Q6NUT2 758 aa35.36■■■■□ 3.25
CCM2-219ENST00000544363 APOBEC3FQ8IUX4 373 aaKnown RBP35.36■■■■□ 3.25
CCM2-219ENST00000544363 RGS22Q8NE09 1264 aa35.36■■■■□ 3.25
CCM2-219ENST00000544363 C8orf76Q96K31 380 aa35.36■■■■□ 3.25
CCM2-219ENST00000544363 RNF26Q9BY78 433 aaPredicted RBP35.36■■■■□ 3.25
CCM2-219ENST00000544363 KANSL2Q9H9L4 492 aa35.36■■■■□ 3.25
CCM2-219ENST00000544363 HIRAP54198 1017 aaPredicted RBP35.35■■■■□ 3.25
CCM2-219ENST00000544363 RRP1BQ14684 758 aaKnown RBP35.35■■■■□ 3.25
CCM2-219ENST00000544363 ANGEL2Q5VTE6 544 aaKnown RBP35.35■■■■□ 3.25
CCM2-219ENST00000544363 WASF1Q92558 559 aa35.35■■■■□ 3.25
CCM2-219ENST00000544363 ALG1Q9BT22 464 aa35.35■■■■□ 3.25
CCM2-219ENST00000544363 DEFB129Q9H1M3 183 aa35.35■■■■□ 3.25
CCM2-219ENST00000544363 ATP6V1DQ9Y5K8 247 aa35.35■■■■□ 3.25
CCM2-219ENST00000544363 NBR1Q14596 966 aa35.35■■■■□ 3.25
CCM2-219ENST00000544363 SHROOM1Q2M3G4 852 aaPredicted RBP35.35■■■■□ 3.25
CCM2-219ENST00000544363 CABP5Q9NP86 173 aa35.35■■■■□ 3.25
CCM2-219ENST00000544363 ADARB2Q9NS39 739 aaKnown RBP35.35■■■■□ 3.25
CCM2-219ENST00000544363 MAD2L2Q9UI95 211 aa35.35■■■■□ 3.25
CCM2-219ENST00000544363 ZC3H4Q9UPT8 1303 aaKnown RBP35.34■■■■□ 3.25
CCM2-219ENST00000544363 DEXIO95424 95 aa35.34■■■■□ 3.25
CCM2-219ENST00000544363 GNAQP50148 359 aa35.34■■■■□ 3.25
CCM2-219ENST00000544363 SRBD1Q8N5C6 995 aaKnown RBP35.34■■■■□ 3.25
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms