RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 IKBKGQ9Y6K9 419 aa15.79■□□□□ 0.12
USP3-204ENST00000540797 RBM6P78332 1123 aaKnown RBP15.79■□□□□ 0.12
USP3-204ENST00000540797 CDC37L1Q7L3B6 337 aa15.79■□□□□ 0.12
USP3-204ENST00000540797 CCDC50Q8IVM0 306 aa15.79■□□□□ 0.12
USP3-204ENST00000540797 TPH2Q8IWU9 490 aa15.79■□□□□ 0.12
USP3-204ENST00000540797 PNMA2Q9UL42 364 aa15.79■□□□□ 0.12
USP3-204ENST00000540797 TBC1D8BQ0IIM8 1120 aa15.79■□□□□ 0.12
USP3-204ENST00000540797 ME3Q16798 604 aa15.79■□□□□ 0.12
USP3-204ENST00000540797 MIER3Q7Z3K6 550 aa15.79■□□□□ 0.12
USP3-204ENST00000540797 NCAPG2Q86XI2 1143 aa15.79■□□□□ 0.12
USP3-204ENST00000540797 MCF2L2Q86YR7 1114 aa15.79■□□□□ 0.12
USP3-204ENST00000540797 BLIDQ8IZY5 108 aa15.79■□□□□ 0.12
USP3-204ENST00000540797 MED23Q9ULK4 1368 aa15.79■□□□□ 0.12
USP3-204ENST00000540797 CSGALNACT2Q8N6G5 542 aa15.79■□□□□ 0.12
USP3-204ENST00000540797 LEO1Q8WVC0 666 aaPredicted RBP15.79■□□□□ 0.12
USP3-204ENST00000540797 SWAP70Q9UH65 585 aa15.79■□□□□ 0.12
USP3-204ENST00000540797 DNAI1Q9UI46 699 aa15.79■□□□□ 0.12
USP3-204ENST00000540797 SSH2Q76I76 1423 aa15.79■□□□□ 0.12
USP3-204ENST00000540797 SLC8A3P57103 927 aa15.78■□□□□ 0.12
USP3-204ENST00000540797 PLCB3Q01970 1234 aa15.78■□□□□ 0.12
USP3-204ENST00000540797 RAD51AP2Q09MP3 1159 aa15.78■□□□□ 0.12
USP3-204ENST00000540797 DHX37Q8IY37 1157 aaKnown RBP15.78■□□□□ 0.12
USP3-204ENST00000540797 DDAH1O94760 285 aa15.78■□□□□ 0.12
USP3-204ENST00000540797 SUPT20HL1Q3ZLR7 823 aa15.78■□□□□ 0.12
USP3-204ENST00000540797 MAATS1Q7Z4T9 603 aa15.78■□□□□ 0.12
USP3-204ENST00000540797 RTKN2Q8IZC4 609 aa15.78■□□□□ 0.12
USP3-204ENST00000540797 MASTLQ96GX5 879 aa15.78■□□□□ 0.12
USP3-204ENST00000540797 KIFAP3Q92845 792 aa15.78■□□□□ 0.12
USP3-204ENST00000540797 TSNARE1Q96NA8 513 aa15.78■□□□□ 0.12
USP3-204ENST00000540797 PSMD1Q99460 953 aa15.78■□□□□ 0.12
USP3-204ENST00000540797 STX10O60499 249 aa15.78■□□□□ 0.12
USP3-204ENST00000540797 ZMYM1Q5SVZ6 1142 aa15.78■□□□□ 0.12
USP3-204ENST00000540797 OTUD6AQ7L8S5 288 aa15.78■□□□□ 0.12
USP3-204ENST00000540797 DDX12PQ92771 950 aa15.78■□□□□ 0.12
USP3-204ENST00000540797 TBC1D7Q9P0N9 293 aa15.78■□□□□ 0.12
USP3-204ENST00000540797 RASAL2Q9UJF2 1139 aa15.78■□□□□ 0.12
USP3-204ENST00000540797 ALKQ9UM73 1620 aa15.77■□□□□ 0.12
USP3-204ENST00000540797 ZMYM6O95789 1325 aa15.77■□□□□ 0.12
USP3-204ENST00000540797 DYNLL1P63167 89 aaKnown RBP15.77■□□□□ 0.12
USP3-204ENST00000540797 TRMT2AQ8IZ69 625 aaKnown RBP15.77■□□□□ 0.12
USP3-204ENST00000540797 NT5C3AQ9H0P0 336 aa15.77■□□□□ 0.12
USP3-204ENST00000540797 PAXBP1Q9Y5B6 917 aa15.77■□□□□ 0.12
USP3-204ENST00000540797 CLTCL1P53675 1640 aa15.77■□□□□ 0.12
USP3-204ENST00000540797 ZNF202O95125 648 aa15.77■□□□□ 0.12
USP3-204ENST00000540797 ADD1P35611 737 aaKnown RBP15.77■□□□□ 0.12
USP3-204ENST00000540797 GSTA5Q7RTV2 222 aa15.77■□□□□ 0.12
USP3-204ENST00000540797 CNGA4Q8IV77 575 aa15.77■□□□□ 0.12
USP3-204ENST00000540797 RNF216Q9NWF9 866 aaPredicted RBP15.77■□□□□ 0.12
USP3-204ENST00000540797 STAP2Q9UGK3 403 aa15.77■□□□□ 0.12
USP3-204ENST00000540797 CTAGE15A4D2H0 777 aa15.77■□□□□ 0.11
USP3-204ENST00000540797 CTAGE8P0CG41 777 aa15.77■□□□□ 0.11
USP3-204ENST00000540797 PRR16Q569H4 304 aa15.77■□□□□ 0.11
USP3-204ENST00000540797 CTAGE6Q86UF2 777 aa15.77■□□□□ 0.11
USP3-204ENST00000540797 CTAGE4Q8IX94 777 aa15.77■□□□□ 0.11
USP3-204ENST00000540797 VPS16Q9H269 839 aa15.77■□□□□ 0.11
USP3-204ENST00000540797 NCAPD2Q15021 1401 aa15.77■□□□□ 0.11
USP3-204ENST00000540797 GCNT3O95395 438 aa15.77■□□□□ 0.11
USP3-204ENST00000540797 PAK1Q13153 545 aa15.77■□□□□ 0.11
USP3-204ENST00000540797 MRPL44Q9H9J2 332 aaKnown RBP15.77■□□□□ 0.11
USP3-204ENST00000540797 SCG2P13521 617 aa15.76■□□□□ 0.11
USP3-204ENST00000540797 BSDC1Q9NW68 430 aaPredicted RBP15.76■□□□□ 0.11
USP3-204ENST00000540797 CGNQ9P2M7 1197 aaKnown RBP15.76■□□□□ 0.11
USP3-204ENST00000540797 CCPG1Q9ULG6 757 aa15.76■□□□□ 0.11
USP3-204ENST00000540797 GUCA1BQ9UMX6 200 aa15.76■□□□□ 0.11
USP3-204ENST00000540797 BBXQ8WY36 941 aaPredicted RBP15.76■□□□□ 0.11
USP3-204ENST00000540797 GJD4Q96KN9 370 aaPredicted RBP15.76■□□□□ 0.11
USP3-204ENST00000540797 NARFQ9UHQ1 456 aa15.76■□□□□ 0.11
USP3-204ENST00000540797 SSX2IPQ9Y2D8 614 aa15.76■□□□□ 0.11
USP3-204ENST00000540797 HLFQ16534 295 aa15.76■□□□□ 0.11
USP3-204ENST00000540797 FAM47CQ5HY64 1035 aa15.76■□□□□ 0.11
USP3-204ENST00000540797 CLSTN2Q9H4D0 955 aa15.76■□□□□ 0.11
USP3-204ENST00000540797 EXOC3O60645 756 aa15.76■□□□□ 0.11
USP3-204ENST00000540797 CIAPIN1Q6FI81 312 aa15.76■□□□□ 0.11
USP3-204ENST00000540797 TTLL11Q8NHH1 800 aa15.76■□□□□ 0.11
USP3-204ENST00000540797 GPKOWQ92917 476 aaPredicted RBP eCLIP15.76■□□□□ 0.11
USP3-204ENST00000540797 ATP6V0A2Q9Y487 856 aa15.76■□□□□ 0.11
USP3-204ENST00000540797 PFKFB2O60825 505 aa15.75■□□□□ 0.11
USP3-204ENST00000540797 CNGA1P29973 690 aa15.75■□□□□ 0.11
USP3-204ENST00000540797 PTPN12Q05209 780 aaKnown RBP15.75■□□□□ 0.11
USP3-204ENST00000540797 CCDC117Q8IWD4 279 aaPredicted RBP15.75■□□□□ 0.11
USP3-204ENST00000540797 KCNG1Q9UIX4 513 aa15.75■□□□□ 0.11
USP3-204ENST00000540797 SYNRGQ9UMZ2 1314 aa15.75■□□□□ 0.11
USP3-204ENST00000540797 SHTN1A0MZ66 631 aa15.75■□□□□ 0.11
USP3-204ENST00000540797 CTAGE9A4FU28 777 aa15.75■□□□□ 0.11
USP3-204ENST00000540797 USP17L3A6NCW0 530 aa15.75■□□□□ 0.11
USP3-204ENST00000540797 USP17L4A6NCW7 530 aa15.75■□□□□ 0.11
USP3-204ENST00000540797 USP17L1Q7RTZ2 530 aa15.75■□□□□ 0.11
USP3-204ENST00000540797 MLKLQ8NB16 471 aa15.75■□□□□ 0.11
USP3-204ENST00000540797 CERKQ8TCT0 537 aa15.75■□□□□ 0.11
USP3-204ENST00000540797 TRAF3IP1Q8TDR0 691 aaPredicted RBP15.75■□□□□ 0.11
USP3-204ENST00000540797 ZSWIM6Q9HCJ5 1215 aa15.75■□□□□ 0.11
USP3-204ENST00000540797 PIM2Q9P1W9 311 aa15.75■□□□□ 0.11
USP3-204ENST00000540797 ANTXR1Q9H6X2 564 aa15.75■□□□□ 0.11
USP3-204ENST00000540797 ADGRB3O60242 1522 aa15.75■□□□□ 0.11
USP3-204ENST00000540797 VWA3BQ502W6 1294 aa15.75■□□□□ 0.11
USP3-204ENST00000540797 NELFCDQ8IXH7 590 aa15.75■□□□□ 0.11
USP3-204ENST00000540797 SPICE1Q8N0Z3 855 aa15.75■□□□□ 0.11
USP3-204ENST00000540797 ZNF526Q8TF50 670 aaPredicted RBP15.75■□□□□ 0.11
USP3-204ENST00000540797 TRPC6Q9Y210 931 aa15.75■□□□□ 0.11
USP3-204ENST00000540797 KDM3AQ9Y4C1 1321 aa15.75■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms