RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 RCSD1Q6JBY9 416 aa15.4■□□□□ 0.06
CCDC42-202ENST00000539522 TMEM179Q6ZVK1 233 aa15.4■□□□□ 0.06
CCDC42-202ENST00000539522 BRI3BPQ8WY22 251 aa15.4■□□□□ 0.06
CCDC42-202ENST00000539522 CEP95Q96GE4 821 aa15.4■□□□□ 0.06
CCDC42-202ENST00000539522 CCDC17Q96LX7 622 aa15.4■□□□□ 0.06
CCDC42-202ENST00000539522 GINM1Q9NU53 330 aa15.4■□□□□ 0.06
CCDC42-202ENST00000539522 ZSWIM5Q9P217 1185 aa15.4■□□□□ 0.06
CCDC42-202ENST00000539522 A0A0G2JLL6 359 aaPredicted RBP15.39■□□□□ 0.05
CCDC42-202ENST00000539522 MPHOSPH10O00566 681 aaKnown RBP15.39■□□□□ 0.05
CCDC42-202ENST00000539522 SPP2Q13103 211 aa15.39■□□□□ 0.05
CCDC42-202ENST00000539522 GRM1Q13255 1194 aa15.39■□□□□ 0.05
CCDC42-202ENST00000539522 RAB3GAP1Q15042 981 aa15.39■□□□□ 0.05
CCDC42-202ENST00000539522 GPAT2Q6NUI2 795 aa15.39■□□□□ 0.05
CCDC42-202ENST00000539522 MFSD6Q6ZSS7 791 aa15.39■□□□□ 0.05
CCDC42-202ENST00000539522 PRRT2Q7Z6L0 340 aaPredicted RBP15.39■□□□□ 0.05
CCDC42-202ENST00000539522 MB21D2Q8IYB1 491 aaPredicted RBP15.39■□□□□ 0.05
CCDC42-202ENST00000539522 CCDC102AQ96A19 550 aa15.39■□□□□ 0.05
CCDC42-202ENST00000539522 PICK1Q9NRD5 415 aa15.39■□□□□ 0.05
CCDC42-202ENST00000539522 RBM19Q9Y4C8 960 aaKnown RBP15.39■□□□□ 0.05
CCDC42-202ENST00000539522 SNX14Q9Y5W7 946 aa15.39■□□□□ 0.05
CCDC42-202ENST00000539522 TRIM75PA6NK02 468 aa15.38■□□□□ 0.05
CCDC42-202ENST00000539522 IGF2BP3O00425 579 aaKnown RBP eCLIP15.38■□□□□ 0.05
CCDC42-202ENST00000539522 KDM4AO75164 1064 aa15.38■□□□□ 0.05
CCDC42-202ENST00000539522 EEF2P13639 858 aaKnown RBP15.38■□□□□ 0.05
CCDC42-202ENST00000539522 RRP12Q5JTH9 1297 aaKnown RBP15.38■□□□□ 0.05
CCDC42-202ENST00000539522 RASGRP2Q7LDG7 609 aa15.38■□□□□ 0.05
CCDC42-202ENST00000539522 ZNF280CQ8ND82 737 aa15.38■□□□□ 0.05
CCDC42-202ENST00000539522 ZKSCAN3Q9BRR0 538 aa15.38■□□□□ 0.05
CCDC42-202ENST00000539522 SENP2Q9HC62 589 aa15.38■□□□□ 0.05
CCDC42-202ENST00000539522 EMILIN3Q9NT22 766 aa15.38■□□□□ 0.05
CCDC42-202ENST00000539522 MTMR4Q9NYA4 1195 aa15.38■□□□□ 0.05
CCDC42-202ENST00000539522 EPB41L2O43491 1005 aaKnown RBP15.37■□□□□ 0.05
CCDC42-202ENST00000539522 RANBP6O60518 1105 aaKnown RBP15.37■□□□□ 0.05
CCDC42-202ENST00000539522 REC8O95072 547 aa15.37■□□□□ 0.05
CCDC42-202ENST00000539522 SLC3A2P08195 630 aaKnown RBP15.37■□□□□ 0.05
CCDC42-202ENST00000539522 PCP11498 1178 aaKnown RBP15.37■□□□□ 0.05
CCDC42-202ENST00000539522 MTMR2Q13614 643 aa15.37■□□□□ 0.05
CCDC42-202ENST00000539522 SH3D19Q5HYK7 790 aa15.37■□□□□ 0.05
CCDC42-202ENST00000539522 PAXIP1Q6ZW49 1069 aaPredicted RBP15.37■□□□□ 0.05
CCDC42-202ENST00000539522 CHST3Q7LGC8 479 aa15.37■□□□□ 0.05
CCDC42-202ENST00000539522 ZNF444Q8N0Y2 327 aaPredicted RBP15.37■□□□□ 0.05
CCDC42-202ENST00000539522 GPHNQ9NQX3 736 aaPredicted RBP15.37■□□□□ 0.05
CCDC42-202ENST00000539522 TCP11L1Q9NUJ3 509 aa15.37■□□□□ 0.05
CCDC42-202ENST00000539522 CXCL11O14625 94 aa15.36■□□□□ 0.05
CCDC42-202ENST00000539522 TSPY3P0CV98 308 aa15.36■□□□□ 0.05
CCDC42-202ENST00000539522 TSPY8P0CW00 308 aa15.36■□□□□ 0.05
CCDC42-202ENST00000539522 CPA1P15085 419 aa15.36■□□□□ 0.05
CCDC42-202ENST00000539522 TM4SF4P48230 202 aa15.36■□□□□ 0.05
CCDC42-202ENST00000539522 BACE1P56817 501 aa15.36■□□□□ 0.05
CCDC42-202ENST00000539522 ICA1Q05084 483 aa15.36■□□□□ 0.05
CCDC42-202ENST00000539522 NOGQ13253 232 aa15.36■□□□□ 0.05
CCDC42-202ENST00000539522 SEC23AQ15436 765 aa15.36■□□□□ 0.05
CCDC42-202ENST00000539522 TREML2Q5T2D2 321 aa15.36■□□□□ 0.05
CCDC42-202ENST00000539522 POTEEQ6S8J3 1075 aa15.36■□□□□ 0.05
CCDC42-202ENST00000539522 FAM43AQ8N2R8 423 aa15.36■□□□□ 0.05
CCDC42-202ENST00000539522 MKL1Q969V6 931 aa15.36■□□□□ 0.05
CCDC42-202ENST00000539522 IL17RAQ96F46 866 aa15.36■□□□□ 0.05
CCDC42-202ENST00000539522 RNF41Q9H4P4 317 aaPredicted RBP15.36■□□□□ 0.05
CCDC42-202ENST00000539522 UPF2Q9HAU5 1272 aaKnown RBP15.36■□□□□ 0.05
CCDC42-202ENST00000539522 CABP5Q9NP86 173 aa15.36■□□□□ 0.05
CCDC42-202ENST00000539522 NYAP2Q9P242 653 aa15.36■□□□□ 0.05
CCDC42-202ENST00000539522 TMX2Q9Y320 296 aa15.36■□□□□ 0.05
CCDC42-202ENST00000539522 TSPY2A6NKD2 308 aa15.35■□□□□ 0.05
CCDC42-202ENST00000539522 BTBD19C9JJ37 291 aa15.35■□□□□ 0.05
CCDC42-202ENST00000539522 MAP2K2P36507 400 aa15.35■□□□□ 0.05
CCDC42-202ENST00000539522 HMGCS2P54868 508 aa15.35■□□□□ 0.05
CCDC42-202ENST00000539522 JMYQ8N9B5 988 aa15.35■□□□□ 0.05
CCDC42-202ENST00000539522 C12orf42Q96LP6 360 aa15.35■□□□□ 0.05
CCDC42-202ENST00000539522 KIF2CQ99661 725 aa15.35■□□□□ 0.05
CCDC42-202ENST00000539522 KIAA1683Q9H0B3 1180 aa15.35■□□□□ 0.05
CCDC42-202ENST00000539522 KANSL2Q9H9L4 492 aa15.35■□□□□ 0.05
CCDC42-202ENST00000539522 ZNF287Q9HBT7 754 aa15.35■□□□□ 0.05
CCDC42-202ENST00000539522 TOMM22Q9NS69 142 aa15.35■□□□□ 0.05
CCDC42-202ENST00000539522 A0A0G2JMZ2 1700 aa15.34■□□□□ 0.05
CCDC42-202ENST00000539522 CCL15-CCL14A0A0B4J2E2 113 aa15.34■□□□□ 0.05
CCDC42-202ENST00000539522 USP17L10C9JJH3 530 aa15.34■□□□□ 0.05
CCDC42-202ENST00000539522 GTF2A2P52657 109 aa15.34■□□□□ 0.05
CCDC42-202ENST00000539522 EXOSC10Q01780 885 aaKnown RBP15.34■□□□□ 0.05
CCDC42-202ENST00000539522 SNAPC2Q13487 334 aa15.34■□□□□ 0.05
CCDC42-202ENST00000539522 ZYXQ15942 572 aaKnown RBP15.34■□□□□ 0.05
CCDC42-202ENST00000539522 CCL15Q16663 113 aa15.34■□□□□ 0.05
CCDC42-202ENST00000539522 LRRC47Q8N1G4 583 aaKnown RBP15.34■□□□□ 0.05
CCDC42-202ENST00000539522 ENAHQ8N8S7 591 aaPredicted RBP15.34■□□□□ 0.05
CCDC42-202ENST00000539522 IGDCC4Q8TDY8 1250 aa15.34■□□□□ 0.05
CCDC42-202ENST00000539522 ANKS1AQ92625 1134 aa15.34■□□□□ 0.05
CCDC42-202ENST00000539522 ESR2Q92731 530 aa15.34■□□□□ 0.05
CCDC42-202ENST00000539522 TBC1D2Q9BYX2 928 aa15.34■□□□□ 0.05
CCDC42-202ENST00000539522 KRT23Q9C075 422 aa15.34■□□□□ 0.05
CCDC42-202ENST00000539522 R3HDMLQ9H3Y0 253 aa15.34■□□□□ 0.05
CCDC42-202ENST00000539522 CLIP2Q9UDT6 1046 aa15.34■□□□□ 0.05
CCDC42-202ENST00000539522 MANSC4A6NHS7 340 aaPredicted RBP15.33■□□□□ 0.04
CCDC42-202ENST00000539522 IFNL1Q8IU54 200 aa15.33■□□□□ 0.04
CCDC42-202ENST00000539522 NCOA7Q8NI08 942 aa15.33■□□□□ 0.04
CCDC42-202ENST00000539522 TCEANC2Q96MN5 208 aa15.33■□□□□ 0.04
CCDC42-202ENST00000539522 ZSCAN10Q96SZ4 725 aaPredicted RBP15.33■□□□□ 0.04
CCDC42-202ENST00000539522 TMEM47Q9BQJ4 181 aa15.33■□□□□ 0.04
CCDC42-202ENST00000539522 CNNM2Q9H8M5 875 aa15.33■□□□□ 0.04
CCDC42-202ENST00000539522 AS3MTQ9HBK9 375 aa15.33■□□□□ 0.04
CCDC42-202ENST00000539522 TNKSO95271 1327 aa15.33■□□□□ 0.04
CCDC42-202ENST00000539522 ZSWIM8A7E2V4 1837 aa15.32■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms