RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 CCDC102AQ96A19 550 aa34.96■■■■□ 3.19
LIMCH1-211ENST00000509638 IGKV6D-41A0A0C4DH26 115 aa34.96■■■■□ 3.19
LIMCH1-211ENST00000509638 ZBTB48P10074 688 aaPredicted RBP34.96■■■■□ 3.19
LIMCH1-211ENST00000509638 KRT32Q14532 448 aa34.96■■■■□ 3.19
LIMCH1-211ENST00000509638 CEP95Q96GE4 821 aa34.96■■■■□ 3.19
LIMCH1-211ENST00000509638 CAPNS2Q96L46 248 aa34.96■■■■□ 3.19
LIMCH1-211ENST00000509638 BACH2Q9BYV9 841 aa34.96■■■■□ 3.19
LIMCH1-211ENST00000509638 AS3MTQ9HBK9 375 aa34.96■■■■□ 3.19
LIMCH1-211ENST00000509638 IRF6O14896 467 aa34.95■■■■□ 3.18
LIMCH1-211ENST00000509638 NMT2O60551 498 aa34.95■■■■□ 3.18
LIMCH1-211ENST00000509638 ADCK5Q3MIX3 580 aa34.95■■■■□ 3.18
LIMCH1-211ENST00000509638 TBC1D2Q9BYX2 928 aa34.95■■■■□ 3.18
LIMCH1-211ENST00000509638 KANSL2Q9H9L4 492 aa34.95■■■■□ 3.18
LIMCH1-211ENST00000509638 THSD7BQ9C0I4 1608 aa34.94■■■■□ 3.18
LIMCH1-211ENST00000509638 TRIM75PA6NK02 468 aa34.94■■■■□ 3.18
LIMCH1-211ENST00000509638 ZNF280CQ8ND82 737 aa34.94■■■■□ 3.18
LIMCH1-211ENST00000509638 AFG3L2Q9Y4W6 797 aa34.94■■■■□ 3.18
LIMCH1-211ENST00000509638 MB21D2Q8IYB1 491 aaPredicted RBP34.93■■■■□ 3.18
LIMCH1-211ENST00000509638 WDR18Q9BV38 432 aa34.93■■■■□ 3.18
LIMCH1-211ENST00000509638 IL17RBQ9NRM6 502 aa34.93■■■■□ 3.18
LIMCH1-211ENST00000509638 ZSWIM5Q9P217 1185 aa34.93■■■■□ 3.18
LIMCH1-211ENST00000509638 LOC285556D6RIA3 1793 aa34.93■■■■□ 3.18
LIMCH1-211ENST00000509638 SPP2Q13103 211 aa34.92■■■■□ 3.18
LIMCH1-211ENST00000509638 COL9A3Q14050 684 aaPredicted RBP34.92■■■■□ 3.18
LIMCH1-211ENST00000509638 CYB5R4Q7L1T6 521 aa34.92■■■■□ 3.18
LIMCH1-211ENST00000509638 MTMR4Q9NYA4 1195 aa34.92■■■■□ 3.18
LIMCH1-211ENST00000509638 ECE1P42892 770 aa34.91■■■■□ 3.18
LIMCH1-211ENST00000509638 ATP2B2Q01814 1243 aa34.91■■■■□ 3.18
LIMCH1-211ENST00000509638 FEZ1Q99689 392 aa34.91■■■■□ 3.18
LIMCH1-211ENST00000509638 ZKSCAN3Q9BRR0 538 aa34.91■■■■□ 3.18
LIMCH1-211ENST00000509638 EEF2P13639 858 aaKnown RBP34.91■■■■□ 3.18
LIMCH1-211ENST00000509638 IQCA1Q86XH1 822 aa34.91■■■■□ 3.18
LIMCH1-211ENST00000509638 ACER1Q8TDN7 264 aa34.91■■■■□ 3.18
LIMCH1-211ENST00000509638 JAKMIP1Q96N16 626 aaKnown RBP34.91■■■■□ 3.18
LIMCH1-211ENST00000509638 NEK1Q96PY6 1258 aa34.91■■■■□ 3.18
LIMCH1-211ENST00000509638 UPF2Q9HAU5 1272 aaKnown RBP34.91■■■■□ 3.18
LIMCH1-211ENST00000509638 ARHGEF10LQ9HCE6 1279 aa34.91■■■■□ 3.18
LIMCH1-211ENST00000509638 KCNH4Q9UQ05 1017 aa34.91■■■■□ 3.18
LIMCH1-211ENST00000509638 MTMR2Q13614 643 aa34.9■■■■□ 3.18
LIMCH1-211ENST00000509638 TCP11L1Q9NUJ3 509 aa34.9■■■■□ 3.18
LIMCH1-211ENST00000509638 STX8Q9UNK0 236 aa34.9■■■■□ 3.18
LIMCH1-211ENST00000509638 VEGFBP49765 207 aa34.89■■■■□ 3.18
LIMCH1-211ENST00000509638 SIAH1Q8IUQ4 282 aa34.89■■■■□ 3.18
LIMCH1-211ENST00000509638 UBAC1Q9BSL1 405 aa34.89■■■■□ 3.18
LIMCH1-211ENST00000509638 WDR33Q9C0J8 1336 aaKnown RBP34.88■■■■□ 3.17
LIMCH1-211ENST00000509638 A0A1W2PRG0 241 aa34.88■■■■□ 3.17
LIMCH1-211ENST00000509638 TTLL1O95922 423 aa34.88■■■■□ 3.17
LIMCH1-211ENST00000509638 ANTXR2P58335 489 aa34.88■■■■□ 3.17
LIMCH1-211ENST00000509638 NOGQ13253 232 aa34.88■■■■□ 3.17
LIMCH1-211ENST00000509638 SNAPC2Q13487 334 aa34.88■■■■□ 3.17
LIMCH1-211ENST00000509638 CHST3Q7LGC8 479 aa34.88■■■■□ 3.17
LIMCH1-211ENST00000509638 TNKSO95271 1327 aa34.87■■■■□ 3.17
LIMCH1-211ENST00000509638 ZSCAN10Q96SZ4 725 aaPredicted RBP34.87■■■■□ 3.17
LIMCH1-211ENST00000509638 NYAP2Q9P242 653 aa34.87■■■■□ 3.17
LIMCH1-211ENST00000509638 USP17L10C9JJH3 530 aa34.87■■■■□ 3.17
LIMCH1-211ENST00000509638 CXCL11O14625 94 aa34.87■■■■□ 3.17
LIMCH1-211ENST00000509638 AOC2O75106 756 aa34.87■■■■□ 3.17
LIMCH1-211ENST00000509638 BACE1P56817 501 aa34.87■■■■□ 3.17
LIMCH1-211ENST00000509638 ANAPC15P60006 121 aa34.87■■■■□ 3.17
LIMCH1-211ENST00000509638 ZYXQ15942 572 aaKnown RBP34.87■■■■□ 3.17
LIMCH1-211ENST00000509638 PPP4R3BQ5MIZ7 849 aa34.87■■■■□ 3.17
LIMCH1-211ENST00000509638 SH2D4AQ9H788 454 aa34.87■■■■□ 3.17
LIMCH1-211ENST00000509638 MCM5P33992 734 aa34.86■■■■□ 3.17
LIMCH1-211ENST00000509638 GTF2A2P52657 109 aa34.86■■■■□ 3.17
LIMCH1-211ENST00000509638 C22orf23Q9BZE7 217 aa34.86■■■■□ 3.17
LIMCH1-211ENST00000509638 CLIP2Q9UDT6 1046 aa34.86■■■■□ 3.17
LIMCH1-211ENST00000509638 A0A0G2JLL6 359 aaPredicted RBP34.85■■■■□ 3.17
LIMCH1-211ENST00000509638 PRC1O43663 620 aa34.85■■■■□ 3.17
LIMCH1-211ENST00000509638 HMGCS2P54868 508 aa34.85■■■■□ 3.17
LIMCH1-211ENST00000509638 DGKZQ13574 1117 aa34.85■■■■□ 3.17
LIMCH1-211ENST00000509638 PRRT2Q7Z6L0 340 aaPredicted RBP34.85■■■■□ 3.17
LIMCH1-211ENST00000509638 LRRC47Q8N1G4 583 aaKnown RBP34.85■■■■□ 3.17
LIMCH1-211ENST00000509638 ENAHQ8N8S7 591 aaPredicted RBP34.85■■■■□ 3.17
LIMCH1-211ENST00000509638 MS4A4AQ96JQ5 239 aa34.85■■■■□ 3.17
LIMCH1-211ENST00000509638 ZIC5Q96T25 663 aa34.85■■■■□ 3.17
LIMCH1-211ENST00000509638 KIAA1683Q9H0B3 1180 aa34.85■■■■□ 3.17
LIMCH1-211ENST00000509638 CASTP20810 708 aaKnown RBP34.84■■■■□ 3.17
LIMCH1-211ENST00000509638 NOVP48745 357 aa34.84■■■■□ 3.17
LIMCH1-211ENST00000509638 RCSD1Q6JBY9 416 aa34.84■■■■□ 3.17
LIMCH1-211ENST00000509638 TMX2Q9Y320 296 aa34.84■■■■□ 3.17
LIMCH1-211ENST00000509638 HMGB1P09429 215 aaKnown RBP34.83■■■■□ 3.17
LIMCH1-211ENST00000509638 PSMA5P28066 241 aa34.83■■■■□ 3.17
LIMCH1-211ENST00000509638 CCL15-CCL14A0A0B4J2E2 113 aa34.83■■■■□ 3.17
LIMCH1-211ENST00000509638 CPA1P15085 419 aa34.83■■■■□ 3.17
LIMCH1-211ENST00000509638 SART3Q15020 963 aaKnown RBP34.83■■■■□ 3.17
LIMCH1-211ENST00000509638 CCL15Q16663 113 aa34.83■■■■□ 3.17
LIMCH1-211ENST00000509638 CCDC178Q5BJE1 867 aa34.83■■■■□ 3.17
LIMCH1-211ENST00000509638 BLOC1S2Q6QNY1 142 aa34.83■■■■□ 3.17
LIMCH1-211ENST00000509638 MANSC4A6NHS7 340 aaPredicted RBP34.82■■■■□ 3.16
LIMCH1-211ENST00000509638 IFIT3O14879 490 aaKnown RBP34.82■■■■□ 3.16
LIMCH1-211ENST00000509638 CETPP11597 493 aa34.82■■■■□ 3.16
LIMCH1-211ENST00000509638 TCEANC2Q96MN5 208 aa34.82■■■■□ 3.16
LIMCH1-211ENST00000509638 C19orf81C9J6K1 198 aa34.81■■■■□ 3.16
LIMCH1-211ENST00000509638 KIF23Q02241 960 aaPredicted RBP34.81■■■■□ 3.16
LIMCH1-211ENST00000509638 DHX32Q7L7V1 743 aaKnown RBP34.81■■■■□ 3.16
LIMCH1-211ENST00000509638 BRI3BPQ8WY22 251 aa34.81■■■■□ 3.16
LIMCH1-211ENST00000509638 ERICH2A1L162 156 aa34.8■■■■□ 3.16
LIMCH1-211ENST00000509638 RBM25P49756 843 aaKnown RBP34.8■■■■□ 3.16
LIMCH1-211ENST00000509638 USP14P54578 494 aa34.8■■■■□ 3.16
LIMCH1-211ENST00000509638 SEC23AQ15436 765 aa34.8■■■■□ 3.16
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms