RNA–Protein interactions for RNA: ENST00000506063.1

TCOF1-208, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 4

Gene TCOF1, Length 526 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-208ENST00000506063 FBXL6Q8N531 539 aa4.4□□□□□ -1.71
TCOF1-208ENST00000506063 FAM151AQ8WW52 585 aa4.4□□□□□ -1.71
TCOF1-208ENST00000506063 PBXIP1Q96AQ6 731 aa4.4□□□□□ -1.71
TCOF1-208ENST00000506063 IL23AQ9NPF7 189 aa4.4□□□□□ -1.71
TCOF1-208ENST00000506063 FAM198AQ9UFP1 575 aa4.4□□□□□ -1.71
TCOF1-208ENST00000506063 PNMA3Q9UL41 463 aa4.4□□□□□ -1.71
TCOF1-208ENST00000506063 RALGAPA2Q2PPJ7 1873 aa4.4□□□□□ -1.71
TCOF1-208ENST00000506063 CDK5RAP2Q96SN8 1893 aa4.4□□□□□ -1.71
TCOF1-208ENST00000506063 MYH2Q9UKX2 1941 aa4.4□□□□□ -1.71
TCOF1-208ENST00000506063 RFX7Q2KHR2 1363 aa4.4□□□□□ -1.71
TCOF1-208ENST00000506063 SEPT4O43236 478 aa4.39□□□□□ -1.71
TCOF1-208ENST00000506063 TAF5LO75529 589 aa4.39□□□□□ -1.71
TCOF1-208ENST00000506063 CNMDO75829 334 aa4.39□□□□□ -1.71
TCOF1-208ENST00000506063 CNGA1P29973 690 aa4.39□□□□□ -1.71
TCOF1-208ENST00000506063 AVPR2P30518 371 aa4.39□□□□□ -1.71
TCOF1-208ENST00000506063 MAPK4P31152 587 aa4.39□□□□□ -1.71
TCOF1-208ENST00000506063 ERVK-9P63128 1117 aa4.39□□□□□ -1.71
TCOF1-208ENST00000506063 ERVK-24P63145 666 aa4.39□□□□□ -1.71
TCOF1-208ENST00000506063 COL19A1Q14993 1142 aa4.39□□□□□ -1.71
TCOF1-208ENST00000506063 PKN1Q16512 942 aa4.39□□□□□ -1.71
TCOF1-208ENST00000506063 SH3D19Q5HYK7 790 aa4.39□□□□□ -1.71
TCOF1-208ENST00000506063 EPHA10Q5JZY3 1008 aa4.39□□□□□ -1.71
TCOF1-208ENST00000506063 MFSD14CQ5VZR4 134 aa4.39□□□□□ -1.71
TCOF1-208ENST00000506063 TRIM67Q6ZTA4 783 aa4.39□□□□□ -1.71
TCOF1-208ENST00000506063 SH3BP5LQ7L8J4 393 aa4.39□□□□□ -1.71
TCOF1-208ENST00000506063 ZNF804AQ7Z570 1209 aa4.39□□□□□ -1.71
TCOF1-208ENST00000506063 PLEKHH3Q7Z736 793 aa4.39□□□□□ -1.71
TCOF1-208ENST00000506063 RNF135Q8IUD6 432 aa4.39□□□□□ -1.71
TCOF1-208ENST00000506063 ADHFE1Q8IWW8 467 aa4.39□□□□□ -1.71
TCOF1-208ENST00000506063 CCDC191Q8NCU4 936 aa4.39□□□□□ -1.71
TCOF1-208ENST00000506063 ASIC4Q96FT7 647 aa4.39□□□□□ -1.71
TCOF1-208ENST00000506063 MRIQ9BWK5 157 aa4.39□□□□□ -1.71
TCOF1-208ENST00000506063 ANKRD2Q9GZV1 360 aa4.39□□□□□ -1.71
TCOF1-208ENST00000506063 PRKAG3Q9UGI9 489 aa4.39□□□□□ -1.71
TCOF1-208ENST00000506063 MCM3APO60318 1980 aa4.39□□□□□ -1.71
TCOF1-208ENST00000506063 UMODL1Q5DID0 1318 aa4.39□□□□□ -1.71
TCOF1-208ENST00000506063 PER1O15534 1290 aaPredicted RBP4.38□□□□□ -1.71
TCOF1-208ENST00000506063 HSP90B1P14625 803 aaKnown RBP4.38□□□□□ -1.71
TCOF1-208ENST00000506063 HOXA7P31268 230 aaPredicted RBP4.38□□□□□ -1.71
TCOF1-208ENST00000506063 CDK7P50613 346 aa4.38□□□□□ -1.71
TCOF1-208ENST00000506063 HMGCS2P54868 508 aa4.38□□□□□ -1.71
TCOF1-208ENST00000506063 HERVK_113P62684 666 aa4.38□□□□□ -1.71
TCOF1-208ENST00000506063 TCP10Q12799 353 aa4.38□□□□□ -1.71
TCOF1-208ENST00000506063 GRB14Q14449 540 aa4.38□□□□□ -1.71
TCOF1-208ENST00000506063 PUM1Q14671 1186 aaKnown RBP eCLIP4.38□□□□□ -1.712e-7■■■□□ 17
TCOF1-208ENST00000506063 RRP1BQ14684 758 aaKnown RBP4.38□□□□□ -1.71
TCOF1-208ENST00000506063 CCSAPQ6IQ19 270 aaPredicted RBP4.38□□□□□ -1.71
TCOF1-208ENST00000506063 OTOP2Q7RTS6 562 aa4.38□□□□□ -1.71
TCOF1-208ENST00000506063 FRMD5Q7Z6J6 570 aa4.38□□□□□ -1.71
TCOF1-208ENST00000506063 CRACR2BQ8N4Y2 399 aaPredicted RBP4.38□□□□□ -1.71
TCOF1-208ENST00000506063 GPRC5AQ8NFJ5 357 aa4.38□□□□□ -1.71
TCOF1-208ENST00000506063 GDPD5Q8WTR4 605 aa4.38□□□□□ -1.71
TCOF1-208ENST00000506063 ARNTL2Q8WYA1 636 aa4.38□□□□□ -1.71
TCOF1-208ENST00000506063 TEKT1Q969V4 418 aa4.38□□□□□ -1.71
TCOF1-208ENST00000506063 EDC3Q96F86 508 aaKnown RBP4.38□□□□□ -1.71
TCOF1-208ENST00000506063 IRF2BPLQ9H1B7 796 aa4.38□□□□□ -1.71
TCOF1-208ENST00000506063 PICK1Q9NRD5 415 aa4.38□□□□□ -1.71
TCOF1-208ENST00000506063 LMCD1Q9NZU5 365 aa4.38□□□□□ -1.71
TCOF1-208ENST00000506063 TANC1Q9C0D5 1861 aa4.38□□□□□ -1.71
TCOF1-208ENST00000506063 TNKSO95271 1327 aa4.38□□□□□ -1.71
TCOF1-208ENST00000506063 ROBO3Q96MS0 1386 aa4.38□□□□□ -1.71
TCOF1-208ENST00000506063 NBEAQ8NFP9 2946 aa4.38□□□□□ -1.71
TCOF1-208ENST00000506063 CNOT1A5YKK6 2376 aaKnown RBP4.38□□□□□ -1.71
TCOF1-208ENST00000506063 PARP14Q460N5 1801 aa4.37□□□□□ -1.71
TCOF1-208ENST00000506063 NLRC5Q86WI3 1866 aa4.37□□□□□ -1.71
TCOF1-208ENST00000506063 TRIP12Q14669 1992 aaPredicted RBP4.37□□□□□ -1.71
TCOF1-208ENST00000506063 SLC15A5A6NIM6 579 aa4.37□□□□□ -1.71
TCOF1-208ENST00000506063 H3BQ06 376 aaPredicted RBP4.37□□□□□ -1.71
TCOF1-208ENST00000506063 GALR2O43603 387 aaPredicted RBP4.37□□□□□ -1.71
TCOF1-208ENST00000506063 CTNND1O60716 968 aaKnown RBP4.37□□□□□ -1.71
TCOF1-208ENST00000506063 ADAMTS4O75173 837 aa4.37□□□□□ -1.71
TCOF1-208ENST00000506063 ZIC2O95409 532 aaPredicted RBP4.37□□□□□ -1.71
TCOF1-208ENST00000506063 PGK1P00558 417 aa4.37□□□□□ -1.71
TCOF1-208ENST00000506063 CD4P01730 458 aa4.37□□□□□ -1.71
TCOF1-208ENST00000506063 FGBP02675 491 aa4.37□□□□□ -1.71
TCOF1-208ENST00000506063 ITGA6P23229 1130 aa4.37□□□□□ -1.71
TCOF1-208ENST00000506063 PTPREP23469 700 aa4.37□□□□□ -1.71
TCOF1-208ENST00000506063 CYP2C18P33260 490 aa4.37□□□□□ -1.71
TCOF1-208ENST00000506063 SPP2Q13103 211 aa4.37□□□□□ -1.71
TCOF1-208ENST00000506063 TMEM67Q5HYA8 995 aa4.37□□□□□ -1.71
TCOF1-208ENST00000506063 PRAMEF19Q5SWL8 479 aa4.37□□□□□ -1.71
TCOF1-208ENST00000506063 CDC42EP5Q6NZY7 148 aa4.37□□□□□ -1.71
TCOF1-208ENST00000506063 CCDC174Q6PII3 467 aa4.37□□□□□ -1.71
TCOF1-208ENST00000506063 HHIPL2Q6UWX4 724 aa4.37□□□□□ -1.71
TCOF1-208ENST00000506063 SUGP1Q8IWZ8 645 aaKnown RBP4.37□□□□□ -1.71
TCOF1-208ENST00000506063 FAM126BQ8IXS8 530 aa4.37□□□□□ -1.71
TCOF1-208ENST00000506063 TMEM199Q8N511 208 aa4.37□□□□□ -1.71
TCOF1-208ENST00000506063 NKD2Q969F2 451 aaPredicted RBP4.37□□□□□ -1.71
TCOF1-208ENST00000506063 FAM84BQ96KN1 310 aaPredicted RBP4.37□□□□□ -1.71
TCOF1-208ENST00000506063 MYD88Q99836 296 aa4.37□□□□□ -1.71
TCOF1-208ENST00000506063 POLR3GLQ9BT43 218 aa4.37□□□□□ -1.71
TCOF1-208ENST00000506063 PPP1R12CQ9BZL4 782 aa4.37□□□□□ -1.71
TCOF1-208ENST00000506063 WNT8AQ9H1J5 351 aa4.37□□□□□ -1.71
TCOF1-208ENST00000506063 TSPYL4Q9UJ04 414 aa4.37□□□□□ -1.71
TCOF1-208ENST00000506063 KNSTRNQ9Y448 316 aa4.37□□□□□ -1.71
TCOF1-208ENST00000506063 NDUFB9Q9Y6M9 179 aa4.37□□□□□ -1.71
TCOF1-208ENST00000506063 ZNF536O15090 1300 aa4.37□□□□□ -1.71
TCOF1-208ENST00000506063 COL4A3Q01955 1670 aa4.36□□□□□ -1.71
TCOF1-208ENST00000506063 LCHNA4D1U4 455 aa4.36□□□□□ -1.71
TCOF1-208ENST00000506063 DCDC2CA8MYV0 355 aa4.36□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms