RNA–Protein interactions for RNA: ENST00000473373.1

CPNE1-222, Transcript of copine 1, human

TSL 2

Gene CPNE1, Length 821 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE1-222	ENST00000473373	METTL16	Q86W50	562 aa	Known RBP	13.81	□□□□□ -0.2
CPNE1-222	ENST00000473373	DYNLL2	Q96FJ2	89 aa		13.81	□□□□□ -0.2
CPNE1-222	ENST00000473373	ARPP21	Q9UBL0	812 aa	Predicted RBP	13.81	□□□□□ -0.2
CPNE1-222	ENST00000473373	PTCH2	Q9Y6C5	1203 aa		13.81	□□□□□ -0.2
CPNE1-222	ENST00000473373	MYPN	Q86TC9	1320 aa		13.81	□□□□□ -0.2
CPNE1-222	ENST00000473373	TNPO2	O14787	897 aa	Known RBP	13.8	□□□□□ -0.2
CPNE1-222	ENST00000473373	GPAA1	O43292	621 aa		13.8	□□□□□ -0.2
CPNE1-222	ENST00000473373	GNAT2	P19087	354 aa		13.8	□□□□□ -0.2
CPNE1-222	ENST00000473373	SHMT1	P34896	483 aa		13.8	□□□□□ -0.2
CPNE1-222	ENST00000473373	GCLC	P48506	637 aa	Predicted RBP	13.8	□□□□□ -0.2
CPNE1-222	ENST00000473373	FXR1	P51114	621 aa	Known RBP eCLIP	13.8	□□□□□ -0.2
CPNE1-222	ENST00000473373	PRMT2	P55345	433 aa		13.8	□□□□□ -0.2
CPNE1-222	ENST00000473373	SLC44A5	Q8NCS7	719 aa		13.8	□□□□□ -0.2
CPNE1-222	ENST00000473373	RILPL2	Q969X0	211 aa		13.8	□□□□□ -0.2
CPNE1-222	ENST00000473373	COA7	Q96BR5	231 aa		13.8	□□□□□ -0.2
CPNE1-222	ENST00000473373	ZNF333	Q96JL9	665 aa		13.8	□□□□□ -0.2
CPNE1-222	ENST00000473373	NACAP1	Q9BZK3	213 aa		13.8	□□□□□ -0.2
CPNE1-222	ENST00000473373	ASCC2	Q9H1I8	757 aa	Predicted RBP	13.8	□□□□□ -0.2
CPNE1-222	ENST00000473373	MKNK2	Q9HBH9	465 aa		13.8	□□□□□ -0.2
CPNE1-222	ENST00000473373	ARHGEF10L	Q9HCE6	1279 aa		13.8	□□□□□ -0.2
CPNE1-222	ENST00000473373	COLQ	Q9Y215	455 aa	Predicted RBP	13.8	□□□□□ -0.2
CPNE1-222	ENST00000473373	CYP2D7	A0A087X1C5	515 aa		13.79	□□□□□ -0.2
CPNE1-222	ENST00000473373	JAG1	P78504	1218 aa		13.79	□□□□□ -0.2
CPNE1-222	ENST00000473373	SEPT2	Q15019	361 aa		13.79	□□□□□ -0.2
CPNE1-222	ENST00000473373	SH3D19	Q5HYK7	790 aa		13.79	□□□□□ -0.2
CPNE1-222	ENST00000473373	SAMD1	Q6SPF0	538 aa	Predicted RBP	13.79	□□□□□ -0.2
CPNE1-222	ENST00000473373	PI4K2B	Q8TCG2	481 aa		13.79	□□□□□ -0.2
CPNE1-222	ENST00000473373	TRIM47	Q96LD4	638 aa		13.79	□□□□□ -0.2
CPNE1-222	ENST00000473373	PAGR1	Q9BTK6	254 aa		13.79	□□□□□ -0.2
CPNE1-222	ENST00000473373	RBBP6	Q7Z6E9	1792 aa	Known RBP	13.78	□□□□□ -0.2
CPNE1-222	ENST00000473373		M0R2C6	588 aa		13.78	□□□□□ -0.2
CPNE1-222	ENST00000473373	BCR	P11274	1271 aa		13.78	□□□□□ -0.2
CPNE1-222	ENST00000473373	CDK8	P49336	464 aa		13.78	□□□□□ -0.2
CPNE1-222	ENST00000473373	PDE1A	P54750	535 aa		13.78	□□□□□ -0.2
CPNE1-222	ENST00000473373	EVX2	Q03828	476 aa		13.78	□□□□□ -0.2
CPNE1-222	ENST00000473373	C12orf60	Q5U649	245 aa		13.78	□□□□□ -0.2
CPNE1-222	ENST00000473373	TMEM179	Q6ZVK1	233 aa		13.78	□□□□□ -0.2
CPNE1-222	ENST00000473373	SH3TC2	Q8TF17	1288 aa		13.78	□□□□□ -0.2
CPNE1-222	ENST00000473373	OSBP2	Q969R2	916 aa		13.78	□□□□□ -0.2
CPNE1-222	ENST00000473373	EVI5L	Q96CN4	794 aa		13.78	□□□□□ -0.2
CPNE1-222	ENST00000473373	STRBP	Q96SI9	672 aa	Known RBP	13.78	□□□□□ -0.2
CPNE1-222	ENST00000473373	NAPB	Q9H115	298 aa		13.78	□□□□□ -0.2
CPNE1-222	ENST00000473373	SH2D4A	Q9H788	454 aa		13.78	□□□□□ -0.2
CPNE1-222	ENST00000473373	ZNF287	Q9HBT7	754 aa		13.78	□□□□□ -0.2
CPNE1-222	ENST00000473373	SRRD	Q9UH36	339 aa		13.78	□□□□□ -0.2
CPNE1-222	ENST00000473373	ADGRA2	Q96PE1	1338 aa		13.78	□□□□□ -0.2
CPNE1-222	ENST00000473373	SLC3A2	P08195	630 aa	Known RBP	13.77	□□□□□ -0.21
CPNE1-222	ENST00000473373	ICA1	Q05084	483 aa		13.77	□□□□□ -0.21
CPNE1-222	ENST00000473373	GABPA	Q06546	454 aa		13.77	□□□□□ -0.21
CPNE1-222	ENST00000473373	KIAA0100	Q14667	2235 aa	Known RBP	13.77	□□□□□ -0.21
CPNE1-222	ENST00000473373	FAM110C	Q1W6H9	321 aa		13.77	□□□□□ -0.21
CPNE1-222	ENST00000473373	WDR78	Q5VTH9	848 aa		13.77	□□□□□ -0.21
CPNE1-222	ENST00000473373	CTR9	Q6PD62	1173 aa		13.77	□□□□□ -0.21
CPNE1-222	ENST00000473373	CCDC17	Q96LX7	622 aa		13.77	□□□□□ -0.21
CPNE1-222	ENST00000473373	TANGO6	Q9C0B7	1094 aa		13.77	□□□□□ -0.21
CPNE1-222	ENST00000473373	MKI67	P46013	3256 aa	Known RBP	13.77	□□□□□ -0.21
CPNE1-222	ENST00000473373	USP17L15	C9J2P7	530 aa		13.76	□□□□□ -0.21
CPNE1-222	ENST00000473373	USP17L13	C9JLJ4	530 aa		13.76	□□□□□ -0.21
CPNE1-222	ENST00000473373	USP17L11	C9JVI0	530 aa		13.76	□□□□□ -0.21
CPNE1-222	ENST00000473373	USP17L18	D6R9N7	530 aa		13.76	□□□□□ -0.21
CPNE1-222	ENST00000473373	USP17L22	D6RA61	530 aa		13.76	□□□□□ -0.21
CPNE1-222	ENST00000473373	USP17L17	D6RBQ6	530 aa		13.76	□□□□□ -0.21
CPNE1-222	ENST00000473373	USP17L19	D6RCP7	530 aa		13.76	□□□□□ -0.21
CPNE1-222	ENST00000473373	USP17L20	D6RJB6	530 aa		13.76	□□□□□ -0.21
CPNE1-222	ENST00000473373		H0YGN5	161 aa		13.76	□□□□□ -0.21
CPNE1-222	ENST00000473373	AKR1B1	P15121	316 aa		13.76	□□□□□ -0.21
CPNE1-222	ENST00000473373	HERVK_113	P62684	666 aa		13.76	□□□□□ -0.21
CPNE1-222	ENST00000473373	UBXN2A	P68543	259 aa		13.76	□□□□□ -0.21
CPNE1-222	ENST00000473373	PRKCZ	Q05513	592 aa		13.76	□□□□□ -0.21
CPNE1-222	ENST00000473373	USP17L24	Q0WX57	530 aa		13.76	□□□□□ -0.21
CPNE1-222	ENST00000473373	C16orf86	Q6ZW13	317 aa		13.76	□□□□□ -0.21
CPNE1-222	ENST00000473373	CHD1L	Q86WJ1	897 aa		13.76	□□□□□ -0.21
CPNE1-222	ENST00000473373	ACER1	Q8TDN7	264 aa		13.76	□□□□□ -0.21
CPNE1-222	ENST00000473373	GTF3C2	Q8WUA4	911 aa	Predicted RBP	13.76	□□□□□ -0.21
CPNE1-222	ENST00000473373	COL11A1	P12107	1806 aa	Predicted RBP	13.76	□□□□□ -0.21
CPNE1-222	ENST00000473373	CENPF	P49454	3210 aa		13.75	□□□□□ -0.21
CPNE1-222	ENST00000473373	GSG1L2	A8MUP6	293 aa		13.75	□□□□□ -0.21
CPNE1-222	ENST00000473373	IGHD	P01880	384 aa		13.75	□□□□□ -0.21
CPNE1-222	ENST00000473373	HOXA7	P31268	230 aa	Predicted RBP	13.75	□□□□□ -0.21
CPNE1-222	ENST00000473373	GRK4	P32298	578 aa		13.75	□□□□□ -0.21
CPNE1-222	ENST00000473373	GIMAP6	Q6P9H5	292 aa		13.75	□□□□□ -0.21
CPNE1-222	ENST00000473373	ZNF444	Q8N0Y2	327 aa	Predicted RBP	13.75	□□□□□ -0.21
CPNE1-222	ENST00000473373	SEC62	Q99442	399 aa	Known RBP	13.75	□□□□□ -0.21
CPNE1-222	ENST00000473373	P2RX7	Q99572	595 aa	Known RBP	13.75	□□□□□ -0.21
CPNE1-222	ENST00000473373	KIAA1683	Q9H0B3	1180 aa		13.75	□□□□□ -0.21
CPNE1-222	ENST00000473373	RPAP3	Q9H6T3	665 aa	Predicted RBP	13.75	□□□□□ -0.21
CPNE1-222	ENST00000473373	EMILIN3	Q9NT22	766 aa		13.75	□□□□□ -0.21
CPNE1-222	ENST00000473373	ISY1	Q9ULR0	285 aa	Known RBP	13.75	□□□□□ -0.21
CPNE1-222	ENST00000473373	PLXNB2	O15031	1838 aa		13.75	□□□□□ -0.21
CPNE1-222	ENST00000473373	PATL2	C9JE40	543 aa	Known RBP	13.74	□□□□□ -0.21
CPNE1-222	ENST00000473373	VCAM1	P19320	739 aa		13.74	□□□□□ -0.21
CPNE1-222	ENST00000473373	CTGF	P29279	349 aa		13.74	□□□□□ -0.21
CPNE1-222	ENST00000473373	CCNA1	P78396	465 aa		13.74	□□□□□ -0.21
CPNE1-222	ENST00000473373	PDE4B	Q07343	736 aa		13.74	□□□□□ -0.21
CPNE1-222	ENST00000473373	ZMYM1	Q5SVZ6	1142 aa		13.74	□□□□□ -0.21
CPNE1-222	ENST00000473373	CCDC129	Q6ZRS4	1044 aa		13.74	□□□□□ -0.21
CPNE1-222	ENST00000473373	CLEC10A	Q8IUN9	316 aa		13.74	□□□□□ -0.21
CPNE1-222	ENST00000473373	SMC5	Q8IY18	1101 aa		13.74	□□□□□ -0.21
CPNE1-222	ENST00000473373	IFNL3	Q8IZI9	196 aa		13.74	□□□□□ -0.21
CPNE1-222	ENST00000473373	GPRC5A	Q8NFJ5	357 aa		13.74	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms