RNA–Protein interactions for RNA: ENST00000461872.6

SYNE1-216, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,075 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-216ENST00000461872 USP5P45974 858 aa7.87□□□□□ -1.15
SYNE1-216ENST00000461872 MYCBPQ99417 103 aaPredicted RBP7.87□□□□□ -1.15
SYNE1-216ENST00000461872 FLOT1O75955 427 aa7.87□□□□□ -1.15
SYNE1-216ENST00000461872 MARCKSP29966 332 aaPredicted RBP7.87□□□□□ -1.15
SYNE1-216ENST00000461872 ADCK5Q3MIX3 580 aa7.87□□□□□ -1.15
SYNE1-216ENST00000461872 CCDC9Q9Y3X0 531 aaKnown RBP7.87□□□□□ -1.15
SYNE1-216ENST00000461872 JRKLQ9Y4A0 524 aa7.87□□□□□ -1.15
SYNE1-216ENST00000461872 SLIT3O75094 1523 aa7.87□□□□□ -1.15
SYNE1-216ENST00000461872 MAATS1Q7Z4T9 603 aa7.87□□□□□ -1.15
SYNE1-216ENST00000461872 UNC5CLQ8IV45 518 aa7.87□□□□□ -1.15
SYNE1-216ENST00000461872 FAM184BQ9ULE4 1060 aa7.87□□□□□ -1.15
SYNE1-216ENST00000461872 ABCC6O95255 1503 aa7.87□□□□□ -1.15
SYNE1-216ENST00000461872 PPP1R2P3Q6NXS1 205 aa7.87□□□□□ -1.15
SYNE1-216ENST00000461872 KCTD17Q8N5Z5 321 aa7.87□□□□□ -1.15
SYNE1-216ENST00000461872 AGXT2Q9BYV1 514 aa7.87□□□□□ -1.15
SYNE1-216ENST00000461872 HYOU1Q9Y4L1 999 aa7.87□□□□□ -1.15
SYNE1-216ENST00000461872 ABCB11O95342 1321 aa7.86□□□□□ -1.15
SYNE1-216ENST00000461872 PRR36Q9H6K5 1346 aa7.86□□□□□ -1.15
SYNE1-216ENST00000461872 PATL2C9JE40 543 aaKnown RBP7.86□□□□□ -1.15
SYNE1-216ENST00000461872 TOB2Q14106 344 aaPredicted RBP7.86□□□□□ -1.15
SYNE1-216ENST00000461872 TNIP1Q15025 636 aa7.86□□□□□ -1.15
SYNE1-216ENST00000461872 SRPRBQ9Y5M8 271 aaKnown RBP7.86□□□□□ -1.15
SYNE1-216ENST00000461872 N4BP2Q86UW6 1770 aaPredicted RBP7.86□□□□□ -1.15
SYNE1-216ENST00000461872 IL2RBP14784 551 aa7.86□□□□□ -1.15
SYNE1-216ENST00000461872 NNTQ13423 1086 aa7.86□□□□□ -1.15
SYNE1-216ENST00000461872 KDM3AQ9Y4C1 1321 aa7.86□□□□□ -1.15
SYNE1-216ENST00000461872 TTC38Q5R3I4 469 aa7.86□□□□□ -1.15
SYNE1-216ENST00000461872 ARPP21Q9UBL0 812 aaPredicted RBP7.86□□□□□ -1.15
SYNE1-216ENST00000461872 KRT9P35527 623 aa7.86□□□□□ -1.15
SYNE1-216ENST00000461872 NDUFA8P51970 172 aa7.86□□□□□ -1.15
SYNE1-216ENST00000461872 CCDC40Q4G0X9 1142 aa7.86□□□□□ -1.15
SYNE1-216ENST00000461872 GBP7Q8N8V2 638 aaPredicted RBP7.86□□□□□ -1.15
SYNE1-216ENST00000461872 TBC1D5Q92609 795 aa7.86□□□□□ -1.15
SYNE1-216ENST00000461872 KCNG1Q9UIX4 513 aa7.86□□□□□ -1.15
SYNE1-216ENST00000461872 XAGE2Q96GT9 111 aa7.86□□□□□ -1.15
SYNE1-216ENST00000461872 SPAG5Q96R06 1193 aa7.86□□□□□ -1.15
SYNE1-216ENST00000461872 THAP9Q9H5L6 903 aa7.86□□□□□ -1.15
SYNE1-216ENST00000461872 BUB1BO60566 1050 aaPredicted RBP7.86□□□□□ -1.15
SYNE1-216ENST00000461872 LRMPQ12912 555 aa7.86□□□□□ -1.15
SYNE1-216ENST00000461872 CUL1Q13616 776 aa7.86□□□□□ -1.15
SYNE1-216ENST00000461872 PLA2G12BQ9BX93 195 aa7.86□□□□□ -1.15
SYNE1-216ENST00000461872 DNAI2Q9GZS0 605 aa7.86□□□□□ -1.15
SYNE1-216ENST00000461872 NYXQ9GZU5 481 aa7.86□□□□□ -1.15
SYNE1-216ENST00000461872 RAB17Q9H0T7 212 aa7.86□□□□□ -1.15
SYNE1-216ENST00000461872 ACTR5Q9H9F9 607 aaPredicted RBP7.86□□□□□ -1.15
SYNE1-216ENST00000461872 CPDO75976 1380 aa7.86□□□□□ -1.15
SYNE1-216ENST00000461872 SRRM3A6NNA2 597 aaPredicted RBP7.86□□□□□ -1.15
SYNE1-216ENST00000461872 NDUFAB1O14561 156 aa7.86□□□□□ -1.15
SYNE1-216ENST00000461872 JAK2O60674 1132 aa7.86□□□□□ -1.15
SYNE1-216ENST00000461872 EIF3BP55884 814 aaKnown RBP7.86□□□□□ -1.15
SYNE1-216ENST00000461872 KIAA0753Q2KHM9 967 aa7.86□□□□□ -1.15
SYNE1-216ENST00000461872 APOA5Q6Q788 366 aa7.86□□□□□ -1.15
SYNE1-216ENST00000461872 NALCNQ8IZF0 1738 aa7.86□□□□□ -1.15
SYNE1-216ENST00000461872 CC2D1AQ6P1N0 951 aaPredicted RBP7.86□□□□□ -1.15
SYNE1-216ENST00000461872 ERBB3P21860 1342 aa7.85□□□□□ -1.15
SYNE1-216ENST00000461872 HAUS3Q68CZ6 603 aa7.85□□□□□ -1.15
SYNE1-216ENST00000461872 SAMD15Q9P1V8 674 aa7.85□□□□□ -1.15
SYNE1-216ENST00000461872 H2AFXP16104 143 aaPredicted RBP7.85□□□□□ -1.15
SYNE1-216ENST00000461872 EXOSC10Q01780 885 aaKnown RBP7.85□□□□□ -1.15
SYNE1-216ENST00000461872 TDRD12Q587J7 1177 aaKnown RBP7.85□□□□□ -1.15
SYNE1-216ENST00000461872 MSL1Q68DK7 614 aa7.85□□□□□ -1.15
SYNE1-216ENST00000461872 LZTFL1Q9NQ48 299 aa7.85□□□□□ -1.15
SYNE1-216ENST00000461872 FOXP2O15409 715 aa7.85□□□□□ -1.15
SYNE1-216ENST00000461872 PDE8AO60658 829 aa7.85□□□□□ -1.15
SYNE1-216ENST00000461872 KRT79Q5XKE5 535 aa7.85□□□□□ -1.15
SYNE1-216ENST00000461872 TAOK1Q7L7X3 1001 aa7.85□□□□□ -1.15
SYNE1-216ENST00000461872 TCEANC2Q96MN5 208 aa7.85□□□□□ -1.15
SYNE1-216ENST00000461872 MRFAP1Q9Y605 127 aa7.85□□□□□ -1.15
SYNE1-216ENST00000461872 GUCY1B3Q02153 619 aa7.85□□□□□ -1.15
SYNE1-216ENST00000461872 C11orf57Q6ZUT1 292 aaPredicted RBP7.85□□□□□ -1.15
SYNE1-216ENST00000461872 GUCA1BQ9UMX6 200 aa7.85□□□□□ -1.15
SYNE1-216ENST00000461872 RIMS1Q86UR5 1692 aaKnown RBP7.85□□□□□ -1.15
SYNE1-216ENST00000461872 POLR2DO15514 142 aaKnown RBP7.85□□□□□ -1.15
SYNE1-216ENST00000461872 PPP4R3CPQ6ZMV5 832 aa7.85□□□□□ -1.15
SYNE1-216ENST00000461872 ZBED6P86452 979 aa7.85□□□□□ -1.15
SYNE1-216ENST00000461872 ZNF444Q8N0Y2 327 aaPredicted RBP7.85□□□□□ -1.15
SYNE1-216ENST00000461872 CCHCR1Q8TD31 782 aa7.85□□□□□ -1.15
SYNE1-216ENST00000461872 MAIP1Q8WWC4 291 aa7.85□□□□□ -1.15
SYNE1-216ENST00000461872 MKNK2Q9HBH9 465 aa7.85□□□□□ -1.15
SYNE1-216ENST00000461872 EPN1Q9Y6I3 576 aaPredicted RBP7.85□□□□□ -1.15
SYNE1-216ENST00000461872 SLC4A4Q9Y6R1 1079 aa7.85□□□□□ -1.15
SYNE1-216ENST00000461872 NWD1Q149M9 1564 aa7.85□□□□□ -1.15
SYNE1-216ENST00000461872 FAM129AQ9BZQ8 928 aa7.85□□□□□ -1.15
SYNE1-216ENST00000461872 MMP1P03956 469 aa7.84□□□□□ -1.15
SYNE1-216ENST00000461872 TBC1D8BQ0IIM8 1120 aa7.84□□□□□ -1.15
SYNE1-216ENST00000461872 PSMD2Q13200 908 aa7.84□□□□□ -1.15
SYNE1-216ENST00000461872 SV2BQ7L1I2 683 aa7.84□□□□□ -1.15
SYNE1-216ENST00000461872 PNMA2Q9UL42 364 aa7.84□□□□□ -1.15
SYNE1-216ENST00000461872 ATP2A1O14983 1001 aa7.84□□□□□ -1.15
SYNE1-216ENST00000461872 PTPREP23469 700 aa7.84□□□□□ -1.15
SYNE1-216ENST00000461872 ALDH3A1P30838 453 aa7.84□□□□□ -1.15
SYNE1-216ENST00000461872 DPCR1Q3MIW9 517 aa7.84□□□□□ -1.15
SYNE1-216ENST00000461872 MMS22LQ6ZRQ5 1243 aa7.84□□□□□ -1.15
SYNE1-216ENST00000461872 IFIH1Q9BYX4 1025 aaKnown RBP7.84□□□□□ -1.15
SYNE1-216ENST00000461872 MAST3O60307 1309 aa7.84□□□□□ -1.15
SYNE1-216ENST00000461872 RANBP6O60518 1105 aaKnown RBP7.84□□□□□ -1.15
SYNE1-216ENST00000461872 ASIC1P78348 528 aa7.84□□□□□ -1.15
SYNE1-216ENST00000461872 BIRC3Q13489 604 aa7.84□□□□□ -1.15
SYNE1-216ENST00000461872 C10orf67Q8IYJ2 551 aa7.84□□□□□ -1.15
SYNE1-216ENST00000461872 STK17AQ9UEE5 414 aa7.84□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms