RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 KRT4P19013 534 aa14.66□□□□□ -0.06
CCDC88A-204ENST00000413716 PMS1P54277 932 aaKnown RBP14.66□□□□□ -0.06
CCDC88A-204ENST00000413716 RCN2Q14257 317 aa14.66□□□□□ -0.06
CCDC88A-204ENST00000413716 TRMT10CQ7L0Y3 403 aaKnown RBP14.66□□□□□ -0.06
CCDC88A-204ENST00000413716 DCLK2Q8N568 766 aa14.66□□□□□ -0.06
CCDC88A-204ENST00000413716 FBXL13Q8NEE6 735 aa14.66□□□□□ -0.06
CCDC88A-204ENST00000413716 TNNI2P48788 182 aa14.66□□□□□ -0.06
CCDC88A-204ENST00000413716 ZFYVE1Q9HBF4 777 aa14.66□□□□□ -0.06
CCDC88A-204ENST00000413716 ANAPC5Q9UJX4 755 aa14.66□□□□□ -0.06
CCDC88A-204ENST00000413716 N4BP2L2Q92802 583 aaPredicted RBP14.66□□□□□ -0.06
CCDC88A-204ENST00000413716 YWHAEP62258 255 aaKnown RBP14.66□□□□□ -0.06
CCDC88A-204ENST00000413716 KIAA2013Q8IYS2 634 aa14.66□□□□□ -0.06
CCDC88A-204ENST00000413716 IFIH1Q9BYX4 1025 aaKnown RBP14.66□□□□□ -0.06
CCDC88A-204ENST00000413716 NOP9Q86U38 636 aaKnown RBP14.66□□□□□ -0.06
CCDC88A-204ENST00000413716 MYRIPQ8NFW9 859 aa14.66□□□□□ -0.06
CCDC88A-204ENST00000413716 LIG3P49916 1009 aa14.65□□□□□ -0.06
CCDC88A-204ENST00000413716 HAUS3Q68CZ6 603 aa14.65□□□□□ -0.06
CCDC88A-204ENST00000413716 PPP4R4Q6NUP7 873 aa14.65□□□□□ -0.06
CCDC88A-204ENST00000413716 IQCDQ96DY2 449 aa14.65□□□□□ -0.06
CCDC88A-204ENST00000413716 RMDN2Q96LZ7 410 aa14.65□□□□□ -0.06
CCDC88A-204ENST00000413716 FBXO2Q9UK22 296 aaPredicted RBP14.65□□□□□ -0.06
CCDC88A-204ENST00000413716 FAM95CA0A1B0GW59 222 aa14.65□□□□□ -0.06
CCDC88A-204ENST00000413716 STAM2O75886 525 aa14.65□□□□□ -0.06
CCDC88A-204ENST00000413716 BRD3Q15059 726 aa14.65□□□□□ -0.06
CCDC88A-204ENST00000413716 TAF11Q15544 211 aa14.65□□□□□ -0.06
CCDC88A-204ENST00000413716 ITM2BQ9Y287 266 aa14.65□□□□□ -0.06
CCDC88A-204ENST00000413716 GNAT2P19087 354 aa14.65□□□□□ -0.06
CCDC88A-204ENST00000413716 GUCY2FP51841 1108 aa14.65□□□□□ -0.06
CCDC88A-204ENST00000413716 ZNF622Q969S3 477 aaKnown RBP eCLIP14.65□□□□□ -0.068e-7■■□□□ 13.1
CCDC88A-204ENST00000413716 TBC1D32Q96NH3 1257 aa14.65□□□□□ -0.06
CCDC88A-204ENST00000413716 DBNLQ9UJU6 430 aaKnown RBP14.65□□□□□ -0.06
CCDC88A-204ENST00000413716 ERICH3Q5RHP9 1530 aa14.65□□□□□ -0.06
CCDC88A-204ENST00000413716 FAM135AQ9P2D6 1515 aa14.65□□□□□ -0.06
CCDC88A-204ENST00000413716 ZNF449Q6P9G9 518 aa14.65□□□□□ -0.06
CCDC88A-204ENST00000413716 CAPN11Q9UMQ6 739 aa14.64□□□□□ -0.07
CCDC88A-204ENST00000413716 SERPINI1Q99574 410 aa14.64□□□□□ -0.07
CCDC88A-204ENST00000413716 TTI1O43156 1089 aa14.64□□□□□ -0.07
CCDC88A-204ENST00000413716 ADCY8P40145 1251 aa14.64□□□□□ -0.07
CCDC88A-204ENST00000413716 IL9RQ01113 521 aa14.64□□□□□ -0.07
CCDC88A-204ENST00000413716 IQCB1Q15051 598 aa14.64□□□□□ -0.07
CCDC88A-204ENST00000413716 WAPLQ7Z5K2 1190 aa14.64□□□□□ -0.07
CCDC88A-204ENST00000413716 FCHSD1Q86WN1 690 aa14.64□□□□□ -0.07
CCDC88A-204ENST00000413716 EFCAB13Q8IY85 973 aa14.64□□□□□ -0.07
CCDC88A-204ENST00000413716 HELLSQ9NRZ9 838 aa14.64□□□□□ -0.07
CCDC88A-204ENST00000413716 SLC4A4Q9Y6R1 1079 aa14.64□□□□□ -0.07
CCDC88A-204ENST00000413716 UQCRFS1P1P0C7P4 283 aa14.64□□□□□ -0.07
CCDC88A-204ENST00000413716 C4orf50Q6ZRC1 276 aa14.64□□□□□ -0.07
CCDC88A-204ENST00000413716 NFKBIL1Q9UBC1 381 aaPredicted RBP14.64□□□□□ -0.07
CCDC88A-204ENST00000413716 PDZD4Q76G19 769 aaPredicted RBP14.64□□□□□ -0.07
CCDC88A-204ENST00000413716 TMTC1Q8IUR5 882 aa14.64□□□□□ -0.07
CCDC88A-204ENST00000413716 KDM1AO60341 852 aa14.64□□□□□ -0.07
CCDC88A-204ENST00000413716 CCNT1O60563 726 aaKnown RBP14.64□□□□□ -0.07
CCDC88A-204ENST00000413716 TMPOP42166 694 aaKnown RBP14.64□□□□□ -0.07
CCDC88A-204ENST00000413716 CDKL2Q92772 493 aa14.64□□□□□ -0.07
CCDC88A-204ENST00000413716 GSDMAQ96QA5 445 aa14.64□□□□□ -0.07
CCDC88A-204ENST00000413716 CCDC169A6NNP5 214 aa14.64□□□□□ -0.07
CCDC88A-204ENST00000413716 MRPS15P82914 257 aaKnown RBP14.64□□□□□ -0.07
CCDC88A-204ENST00000413716 ACBD5Q5T8D3 534 aaPredicted RBP14.64□□□□□ -0.07
CCDC88A-204ENST00000413716 SFMBT2Q5VUG0 894 aa14.64□□□□□ -0.07
CCDC88A-204ENST00000413716 AMFRQ9UKV5 643 aa14.64□□□□□ -0.07
CCDC88A-204ENST00000413716 CCDC141Q6ZP82 1450 aa14.64□□□□□ -0.07
CCDC88A-204ENST00000413716 NECAB1Q8N987 351 aa14.64□□□□□ -0.07
CCDC88A-204ENST00000413716 MIS18AQ9NYP9 233 aa14.64□□□□□ -0.07
CCDC88A-204ENST00000413716 PNMA2Q9UL42 364 aa14.64□□□□□ -0.07
CCDC88A-204ENST00000413716 VWA3AA6NCI4 1184 aa14.63□□□□□ -0.07
CCDC88A-204ENST00000413716 TSTA3Q13630 321 aaPredicted RBP14.63□□□□□ -0.07
CCDC88A-204ENST00000413716 LONRF2Q1L5Z9 754 aa14.63□□□□□ -0.07
CCDC88A-204ENST00000413716 GLE1Q53GS7 698 aaKnown RBP14.63□□□□□ -0.07
CCDC88A-204ENST00000413716 NME8Q8N427 588 aa14.63□□□□□ -0.07
CCDC88A-204ENST00000413716 TEX9Q8N6V9 391 aa14.63□□□□□ -0.07
CCDC88A-204ENST00000413716 HYOU1Q9Y4L1 999 aa14.63□□□□□ -0.07
CCDC88A-204ENST00000413716 ATP1A2P50993 1020 aa14.63□□□□□ -0.07
CCDC88A-204ENST00000413716 GDAP1L1Q96MZ0 367 aa14.63□□□□□ -0.07
CCDC88A-204ENST00000413716 PTCD1O75127 700 aaKnown RBP14.63□□□□□ -0.07
CCDC88A-204ENST00000413716 CARSP49589 748 aaKnown RBP14.63□□□□□ -0.07
CCDC88A-204ENST00000413716 DACH2Q96NX9 599 aa14.63□□□□□ -0.07
CCDC88A-204ENST00000413716 CSRNP1Q96S65 589 aa14.63□□□□□ -0.07
CCDC88A-204ENST00000413716 SMYD2Q9NRG4 433 aa14.63□□□□□ -0.07
CCDC88A-204ENST00000413716 LPXNO60711 386 aa14.63□□□□□ -0.07
CCDC88A-204ENST00000413716 PROSER2Q86WR7 435 aaPredicted RBP14.63□□□□□ -0.07
CCDC88A-204ENST00000413716 CCDC197Q8NCU1 140 aa14.63□□□□□ -0.07
CCDC88A-204ENST00000413716 BZW2Q9Y6E2 419 aaKnown RBP14.63□□□□□ -0.07
CCDC88A-204ENST00000413716 RRS1Q15050 365 aaKnown RBP14.63□□□□□ -0.07
CCDC88A-204ENST00000413716 CACTINQ8WUQ7 758 aaKnown RBP14.63□□□□□ -0.07
CCDC88A-204ENST00000413716 BRF1Q92994 677 aa14.63□□□□□ -0.07
CCDC88A-204ENST00000413716 DAPK1P53355 1430 aa14.63□□□□□ -0.07
CCDC88A-204ENST00000413716 SAT1P21673 171 aa14.63□□□□□ -0.07
CCDC88A-204ENST00000413716 GRIN1Q05586 938 aa14.63□□□□□ -0.07
CCDC88A-204ENST00000413716 ATG16L1Q676U5 607 aa14.63□□□□□ -0.07
CCDC88A-204ENST00000413716 RINT1Q6NUQ1 792 aa14.63□□□□□ -0.07
CCDC88A-204ENST00000413716 PPP1R42Q7Z4L9 355 aa14.63□□□□□ -0.07
CCDC88A-204ENST00000413716 BRDTQ58F21 947 aaPredicted RBP14.63□□□□□ -0.07
CCDC88A-204ENST00000413716 RNF217Q8TC41 542 aa14.62□□□□□ -0.07
CCDC88A-204ENST00000413716 PRPSAP1Q14558 356 aa14.62□□□□□ -0.07
CCDC88A-204ENST00000413716 NOD1Q9Y239 953 aa14.62□□□□□ -0.07
CCDC88A-204ENST00000413716 ITKQ08881 620 aa14.62□□□□□ -0.07
CCDC88A-204ENST00000413716 BEND3Q5T5X7 828 aa14.62□□□□□ -0.07
CCDC88A-204ENST00000413716 CCPG1Q9ULG6 757 aa14.62□□□□□ -0.07
CCDC88A-204ENST00000413716 TMEM247A6NEH6 219 aa14.62□□□□□ -0.07
CCDC88A-204ENST00000413716 PLCG2P16885 1265 aa14.62□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms