RNA–Protein interactions for RNA: ENST00000317840.9

COL3A1-202, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2 BASIC

Gene COL3A1, Length 3,873 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-202ENST00000317840 CTAGE9A4FU28 777 aa11.92□□□□□ -0.5
COL3A1-202ENST00000317840 MCM7P33993 719 aa11.92□□□□□ -0.5
COL3A1-202ENST00000317840 GYS2P54840 703 aa11.92□□□□□ -0.5
COL3A1-202ENST00000317840 RBL2Q08999 1139 aa11.92□□□□□ -0.5
COL3A1-202ENST00000317840 TRIM65Q6PJ69 517 aa11.92□□□□□ -0.5
COL3A1-202ENST00000317840 SGMS1Q86VZ5 419 aa11.92□□□□□ -0.5
COL3A1-202ENST00000317840 CTAGE1Q96RT6 745 aa11.92□□□□□ -0.5
COL3A1-202ENST00000317840 TNKSO95271 1327 aa11.92□□□□□ -0.5
COL3A1-202ENST00000317840 ZBTB22O15209 634 aa11.92□□□□□ -0.5
COL3A1-202ENST00000317840 PLCD1P51178 756 aa11.92□□□□□ -0.5
COL3A1-202ENST00000317840 CRACR2BQ8N4Y2 399 aaPredicted RBP11.92□□□□□ -0.5
COL3A1-202ENST00000317840 TC2NQ8N9U0 490 aa11.92□□□□□ -0.5
COL3A1-202ENST00000317840 FOXP1Q9H334 677 aaPredicted RBP11.92□□□□□ -0.5
COL3A1-202ENST00000317840 FAM205CA6NFA0 338 aa11.91□□□□□ -0.5
COL3A1-202ENST00000317840 RIMBP2O15034 1052 aa11.91□□□□□ -0.5
COL3A1-202ENST00000317840 CSF1RP07333 972 aa11.91□□□□□ -0.5
COL3A1-202ENST00000317840 GNAT2P19087 354 aa11.91□□□□□ -0.5
COL3A1-202ENST00000317840 BMP6P22004 513 aa11.91□□□□□ -0.5
COL3A1-202ENST00000317840 CASP14P31944 242 aa11.91□□□□□ -0.5
COL3A1-202ENST00000317840 USP5P45974 858 aa11.91□□□□□ -0.5
COL3A1-202ENST00000317840 NTRK3Q16288 839 aa11.91□□□□□ -0.5
COL3A1-202ENST00000317840 AMOTL1Q8IY63 956 aa11.91□□□□□ -0.5
COL3A1-202ENST00000317840 CAGE1Q8TC20 777 aa11.91□□□□□ -0.5
COL3A1-202ENST00000317840 SYMPKQ92797 1274 aaKnown RBP11.91□□□□□ -0.5
COL3A1-202ENST00000317840 EPB41L4AQ9HCS5 686 aaPredicted RBP11.91□□□□□ -0.5
COL3A1-202ENST00000317840 LMO7Q8WWI1 1683 aa11.91□□□□□ -0.5
COL3A1-202ENST00000317840 EIF3JO75822 258 aaKnown RBP11.91□□□□□ -0.5
COL3A1-202ENST00000317840 TRIM37O94972 964 aa11.91□□□□□ -0.5
COL3A1-202ENST00000317840 RBM5P52756 815 aaKnown RBP eCLIP11.91□□□□□ -0.5
COL3A1-202ENST00000317840 PPARAQ07869 468 aa11.91□□□□□ -0.5
COL3A1-202ENST00000317840 CCDC93Q567U6 631 aa11.91□□□□□ -0.5
COL3A1-202ENST00000317840 LEKR1Q6ZMV7 388 aa11.91□□□□□ -0.5
COL3A1-202ENST00000317840 VPS18Q9P253 973 aa11.91□□□□□ -0.5
COL3A1-202ENST00000317840 GUCA1BQ9UMX6 200 aa11.91□□□□□ -0.5
COL3A1-202ENST00000317840 ITPK1Q13572 414 aa11.91□□□□□ -0.5
COL3A1-202ENST00000317840 FAM196AQ6ZSG2 479 aa11.91□□□□□ -0.5
COL3A1-202ENST00000317840 TAB2Q9NYJ8 693 aa11.91□□□□□ -0.5
COL3A1-202ENST00000317840 FBXO2Q9UK22 296 aaPredicted RBP11.91□□□□□ -0.5
COL3A1-202ENST00000317840 CRYBG1Q9Y4K1 1723 aa11.91□□□□□ -0.5
COL3A1-202ENST00000317840 MAGEB6P1A0A0J9YX57 407 aa11.9□□□□□ -0.5
COL3A1-202ENST00000317840 CTAGE15A4D2H0 777 aa11.9□□□□□ -0.5
COL3A1-202ENST00000317840 CTAGE8P0CG41 777 aa11.9□□□□□ -0.5
COL3A1-202ENST00000317840 PLA2G4AP47712 749 aa11.9□□□□□ -0.5
COL3A1-202ENST00000317840 TOB1P50616 345 aaPredicted RBP11.9□□□□□ -0.5
COL3A1-202ENST00000317840 TRIM28Q13263 835 aaKnown RBP11.9□□□□□ -0.5
COL3A1-202ENST00000317840 PARP10Q53GL7 1025 aa11.9□□□□□ -0.5
COL3A1-202ENST00000317840 CTAGE6Q86UF2 777 aa11.9□□□□□ -0.5
COL3A1-202ENST00000317840 CNGA4Q8IV77 575 aa11.9□□□□□ -0.5
COL3A1-202ENST00000317840 CTAGE4Q8IX94 777 aa11.9□□□□□ -0.5
COL3A1-202ENST00000317840 TRIML1Q8N9V2 468 aa11.9□□□□□ -0.5
COL3A1-202ENST00000317840 ZNF622Q969S3 477 aaKnown RBP eCLIP11.9□□□□□ -0.5
COL3A1-202ENST00000317840 PLIN2Q99541 437 aa11.9□□□□□ -0.5
COL3A1-202ENST00000317840 HSD3B7Q9H2F3 369 aa11.9□□□□□ -0.5
COL3A1-202ENST00000317840 SRPRBQ9Y5M8 271 aaKnown RBP11.9□□□□□ -0.5
COL3A1-202ENST00000317840 GSG1L2A8MUP6 293 aa11.9□□□□□ -0.5
COL3A1-202ENST00000317840 EIF5P55010 431 aaKnown RBP11.9□□□□□ -0.5
COL3A1-202ENST00000317840 CHRNDQ07001 517 aa11.9□□□□□ -0.5
COL3A1-202ENST00000317840 SPATA1Q5VX52 437 aa11.9□□□□□ -0.5
COL3A1-202ENST00000317840 CC2D1AQ6P1N0 951 aaPredicted RBP11.9□□□□□ -0.5
COL3A1-202ENST00000317840 PIK3AP1Q6ZUJ8 805 aa11.9□□□□□ -0.5
COL3A1-202ENST00000317840 CEP112Q8N8E3 955 aa11.9□□□□□ -0.5
COL3A1-202ENST00000317840 EEF2KMTQ96G04 330 aa11.9□□□□□ -0.5
COL3A1-202ENST00000317840 SLF1Q9BQI6 1058 aa11.9□□□□□ -0.5
COL3A1-202ENST00000317840 QTRT2Q9H974 415 aaKnown RBP11.9□□□□□ -0.5
COL3A1-202ENST00000317840 KCND1Q9NSA2 647 aa11.9□□□□□ -0.5
COL3A1-202ENST00000317840 FAM217BQ9NTX9 383 aaPredicted RBP11.9□□□□□ -0.5
COL3A1-202ENST00000317840 MAGEC2Q9UBF1 373 aaPredicted RBP11.9□□□□□ -0.5
COL3A1-202ENST00000317840 CYP2D7A0A087X1C5 515 aa11.9□□□□□ -0.5
COL3A1-202ENST00000317840 PTF1AQ7RTS3 328 aa11.9□□□□□ -0.5
COL3A1-202ENST00000317840 TXLNBQ8N3L3 684 aa11.9□□□□□ -0.5
COL3A1-202ENST00000317840 IQUBQ8NA54 791 aa11.9□□□□□ -0.5
COL3A1-202ENST00000317840 RABGGTAQ92696 567 aa11.9□□□□□ -0.5
COL3A1-202ENST00000317840 MRPL44Q9H9J2 332 aaKnown RBP11.9□□□□□ -0.5
COL3A1-202ENST00000317840 INTS13Q9NVM9 706 aa11.9□□□□□ -0.5
COL3A1-202ENST00000317840 CHD2O14647 1828 aaKnown RBP11.9□□□□□ -0.51
COL3A1-202ENST00000317840 MROH5Q6ZUA9 1318 aa11.9□□□□□ -0.51
COL3A1-202ENST00000317840 BAZ2BQ9UIF8 2168 aaKnown RBP11.9□□□□□ -0.51
COL3A1-202ENST00000317840 CDC25AP30304 524 aa11.89□□□□□ -0.51
COL3A1-202ENST00000317840 KRT9P35527 623 aa11.89□□□□□ -0.51
COL3A1-202ENST00000317840 UBXN1Q04323 297 aa11.89□□□□□ -0.51
COL3A1-202ENST00000317840 TTC38Q5R3I4 469 aa11.89□□□□□ -0.51
COL3A1-202ENST00000317840 KIAA1328Q86T90 577 aa11.89□□□□□ -0.51
COL3A1-202ENST00000317840 ACRBPQ8NEB7 543 aa11.89□□□□□ -0.51
COL3A1-202ENST00000317840 SLC4A9Q96Q91 983 aa11.89□□□□□ -0.51
COL3A1-202ENST00000317840 CWC15Q9P013 229 aaKnown RBP11.89□□□□□ -0.51
COL3A1-202ENST00000317840 ERCC5P28715 1186 aaPredicted RBP11.89□□□□□ -0.51
COL3A1-202ENST00000317840 HNRNPH2P55795 449 aaKnown RBP11.89□□□□□ -0.51
COL3A1-202ENST00000317840 FAM193AP78312 1265 aa11.89□□□□□ -0.51
COL3A1-202ENST00000317840 LONRF2Q1L5Z9 754 aa11.89□□□□□ -0.51
COL3A1-202ENST00000317840 GPR101Q96P66 508 aaPredicted RBP11.89□□□□□ -0.51
COL3A1-202ENST00000317840 PTGDRQ13258 359 aa11.89□□□□□ -0.51
COL3A1-202ENST00000317840 MORC3Q14149 939 aa11.89□□□□□ -0.51
COL3A1-202ENST00000317840 MSL1Q68DK7 614 aa11.89□□□□□ -0.51
COL3A1-202ENST00000317840 ACBD3Q9H3P7 528 aa11.89□□□□□ -0.51
COL3A1-202ENST00000317840 MRC1P22897 1456 aa11.89□□□□□ -0.51
COL3A1-202ENST00000317840 MAP3K9P80192 1104 aa11.88□□□□□ -0.51
COL3A1-202ENST00000317840 MRFAP1Q9Y605 127 aa11.88□□□□□ -0.51
COL3A1-202ENST00000317840 N4BP2Q86UW6 1770 aaPredicted RBP11.88□□□□□ -0.51
COL3A1-202ENST00000317840 CAMTA1Q9Y6Y1 1673 aa11.88□□□□□ -0.51
COL3A1-202ENST00000317840 TSPY2A6NKD2 308 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms