RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 NOTCH3Q9UM47 2321 aa5.33□□□□□ -1.56
CSMD3-201ENST00000297405 TMEM191CA6NGB0 347 aa5.33□□□□□ -1.56
CSMD3-201ENST00000297405 RIOK3O14730 519 aaKnown RBP5.33□□□□□ -1.56
CSMD3-201ENST00000297405 KRT6AP02538 564 aa5.33□□□□□ -1.56
CSMD3-201ENST00000297405 KRT6BP04259 564 aa5.33□□□□□ -1.56
CSMD3-201ENST00000297405 TMEM191BP0C7N4 346 aa5.33□□□□□ -1.56
CSMD3-201ENST00000297405 KRT6CP48668 564 aa5.33□□□□□ -1.56
CSMD3-201ENST00000297405 GRIN1Q05586 938 aa5.33□□□□□ -1.56
CSMD3-201ENST00000297405 GSTA5Q7RTV2 222 aa5.33□□□□□ -1.56
CSMD3-201ENST00000297405 PSPC1Q8WXF1 523 aaKnown RBP5.33□□□□□ -1.56
CSMD3-201ENST00000297405 C19orf60Q96EN9 201 aa5.33□□□□□ -1.56
CSMD3-201ENST00000297405 TSC22D4Q9Y3Q8 395 aa5.33□□□□□ -1.56
CSMD3-201ENST00000297405 ESCO1Q5FWF5 840 aa5.33□□□□□ -1.56
CSMD3-201ENST00000297405 MLKLQ8NB16 471 aa5.33□□□□□ -1.56
CSMD3-201ENST00000297405 FBXO18Q8NFZ0 1043 aa5.33□□□□□ -1.56
CSMD3-201ENST00000297405 DYTNA2CJ06 578 aa5.33□□□□□ -1.56
CSMD3-201ENST00000297405 SLC9C1Q4G0N8 1177 aa5.33□□□□□ -1.56
CSMD3-201ENST00000297405 PANK1Q8TE04 598 aa5.33□□□□□ -1.56
CSMD3-201ENST00000297405 TRIM47Q96LD4 638 aa5.33□□□□□ -1.56
CSMD3-201ENST00000297405 TEX12Q9BXU0 123 aa5.33□□□□□ -1.56
CSMD3-201ENST00000297405 ASXL1Q8IXJ9 1541 aa5.33□□□□□ -1.56
CSMD3-201ENST00000297405 POLEQ07864 2286 aa5.33□□□□□ -1.56
CSMD3-201ENST00000297405 KDM1AO60341 852 aa5.33□□□□□ -1.56
CSMD3-201ENST00000297405 MCF2P10911 925 aa5.33□□□□□ -1.56
CSMD3-201ENST00000297405 BIRC2Q13490 618 aa5.33□□□□□ -1.56
CSMD3-201ENST00000297405 EFCAB2Q5VUJ9 269 aa5.33□□□□□ -1.56
CSMD3-201ENST00000297405 FGD4Q96M96 766 aa5.33□□□□□ -1.56
CSMD3-201ENST00000297405 CXorf56Q9H5V9 222 aa5.33□□□□□ -1.56
CSMD3-201ENST00000297405 TARSL2A2RTX5 802 aaKnown RBP5.33□□□□□ -1.56
CSMD3-201ENST00000297405 H0Y626 953 aa5.33□□□□□ -1.56
CSMD3-201ENST00000297405 TRIM16O95361 564 aa5.33□□□□□ -1.56
CSMD3-201ENST00000297405 KRT13P13646 458 aa5.33□□□□□ -1.56
CSMD3-201ENST00000297405 KRT71Q3SY84 523 aa5.33□□□□□ -1.56
CSMD3-201ENST00000297405 HHATQ5VTY9 493 aa5.33□□□□□ -1.56
CSMD3-201ENST00000297405 VTI1AQ96AJ9 217 aa5.33□□□□□ -1.56
CSMD3-201ENST00000297405 TRIM8Q9BZR9 551 aa5.33□□□□□ -1.56
CSMD3-201ENST00000297405 PPCSQ9HAB8 311 aa5.33□□□□□ -1.56
CSMD3-201ENST00000297405 DDX41Q9UJV9 622 aaKnown RBP5.33□□□□□ -1.56
CSMD3-201ENST00000297405 CHD2O14647 1828 aaKnown RBP5.33□□□□□ -1.56
CSMD3-201ENST00000297405 NUTM2BA6NNL0 878 aaPredicted RBP5.33□□□□□ -1.56
CSMD3-201ENST00000297405 NUTM2EB1AL46 878 aaPredicted RBP5.33□□□□□ -1.56
CSMD3-201ENST00000297405 AP2B1P63010 937 aa5.33□□□□□ -1.56
CSMD3-201ENST00000297405 AP1B1Q10567 949 aa5.33□□□□□ -1.56
CSMD3-201ENST00000297405 TRIM68Q6AZZ1 485 aa5.33□□□□□ -1.56
CSMD3-201ENST00000297405 KRT80Q6KB66 452 aa5.33□□□□□ -1.56
CSMD3-201ENST00000297405 RETREG2Q8NC44 543 aa5.33□□□□□ -1.56
CSMD3-201ENST00000297405 PPIL4Q8WUA2 492 aaKnown RBP eCLIP5.33□□□□□ -1.56
CSMD3-201ENST00000297405 MPP4Q96JB8 637 aa5.33□□□□□ -1.56
CSMD3-201ENST00000297405 ARL2BPQ9Y2Y0 163 aa5.33□□□□□ -1.56
CSMD3-201ENST00000297405 PFDN6O15212 129 aa5.33□□□□□ -1.56
CSMD3-201ENST00000297405 E2F6O75461 281 aa5.33□□□□□ -1.56
CSMD3-201ENST00000297405 LETM2Q2VYF4 491 aa5.33□□□□□ -1.56
CSMD3-201ENST00000297405 POLR3CQ9BUI4 534 aaPredicted RBP5.33□□□□□ -1.56
CSMD3-201ENST00000297405 BCL2L12Q9HB09 334 aa5.33□□□□□ -1.56
CSMD3-201ENST00000297405 CCDC194A0A1B0GVG4 234 aa5.33□□□□□ -1.56
CSMD3-201ENST00000297405 GOLGA8CPA6NN73 597 aa5.33□□□□□ -1.56
CSMD3-201ENST00000297405 HPDP32754 393 aaPredicted RBP5.33□□□□□ -1.56
CSMD3-201ENST00000297405 EPHB4P54760 987 aa5.33□□□□□ -1.56
CSMD3-201ENST00000297405 PUS7Q96PZ0 661 aaKnown RBP5.33□□□□□ -1.56
CSMD3-201ENST00000297405 PSD3Q9NYI0 1048 aa5.33□□□□□ -1.56
CSMD3-201ENST00000297405 ARHGEF12Q9NZN5 1544 aa5.32□□□□□ -1.56
CSMD3-201ENST00000297405 STX2P32856 288 aa5.32□□□□□ -1.56
CSMD3-201ENST00000297405 NBPF14Q5TI25 921 aa5.32□□□□□ -1.56
CSMD3-201ENST00000297405 ATP6V0A1Q93050 837 aa5.32□□□□□ -1.56
CSMD3-201ENST00000297405 FAM25AB3EWG3 89 aa5.32□□□□□ -1.56
CSMD3-201ENST00000297405 FAM25CB3EWG5 89 aa5.32□□□□□ -1.56
CSMD3-201ENST00000297405 FAM25GB3EWG6 89 aa5.32□□□□□ -1.56
CSMD3-201ENST00000297405 MAPK13O15264 365 aa5.32□□□□□ -1.56
CSMD3-201ENST00000297405 KPNA2P52292 529 aaKnown RBP5.32□□□□□ -1.56
CSMD3-201ENST00000297405 KCNK9Q9NPC2 374 aa5.32□□□□□ -1.56
CSMD3-201ENST00000297405 HACD3Q9P035 362 aa5.32□□□□□ -1.56
CSMD3-201ENST00000297405 TBKBP1A7MCY6 615 aa5.32□□□□□ -1.56
CSMD3-201ENST00000297405 KRT16P08779 473 aa5.32□□□□□ -1.56
CSMD3-201ENST00000297405 ST13P50502 369 aaKnown RBP5.32□□□□□ -1.56
CSMD3-201ENST00000297405 MRPS15P82914 257 aaKnown RBP5.32□□□□□ -1.56
CSMD3-201ENST00000297405 STRN3Q13033 797 aa5.32□□□□□ -1.56
CSMD3-201ENST00000297405 RFWD2Q8NHY2 731 aa5.32□□□□□ -1.56
CSMD3-201ENST00000297405 PDP2Q9P2J9 529 aa5.32□□□□□ -1.56
CSMD3-201ENST00000297405 PRR23AA6NEV1 266 aa5.32□□□□□ -1.56
CSMD3-201ENST00000297405 VGLL3A8MV65 326 aa5.32□□□□□ -1.56
CSMD3-201ENST00000297405 OLR1P78380 273 aa5.32□□□□□ -1.56
CSMD3-201ENST00000297405 RARS2Q5T160 578 aaKnown RBP5.32□□□□□ -1.56
CSMD3-201ENST00000297405 KLC3Q6P597 504 aa5.32□□□□□ -1.56
CSMD3-201ENST00000297405 TMTC3Q6ZXV5 915 aa5.32□□□□□ -1.56
CSMD3-201ENST00000297405 TUBGCP3Q96CW5 907 aa5.32□□□□□ -1.56
CSMD3-201ENST00000297405 MORC2Q9Y6X9 1032 aaPredicted RBP5.32□□□□□ -1.56
CSMD3-201ENST00000297405 FKBP4Q02790 459 aaKnown RBP eCLIP5.32□□□□□ -1.56
CSMD3-201ENST00000297405 SSRP1Q08945 709 aaKnown RBP5.32□□□□□ -1.56
CSMD3-201ENST00000297405 IQUBQ8NA54 791 aa5.32□□□□□ -1.56
CSMD3-201ENST00000297405 MYO1CO00159 1063 aa5.32□□□□□ -1.56
CSMD3-201ENST00000297405 ZC3H6P61129 1189 aaKnown RBP5.32□□□□□ -1.56
CSMD3-201ENST00000297405 ETF1P62495 437 aaKnown RBP5.32□□□□□ -1.56
CSMD3-201ENST00000297405 ANO5Q75V66 913 aa5.32□□□□□ -1.56
CSMD3-201ENST00000297405 LRRC37BQ96QE4 947 aa5.32□□□□□ -1.56
CSMD3-201ENST00000297405 IRAK4Q9NWZ3 460 aa5.32□□□□□ -1.56
CSMD3-201ENST00000297405 RASGRF1Q13972 1273 aa5.32□□□□□ -1.56
CSMD3-201ENST00000297405 ATAD3BQ5T9A4 648 aa5.32□□□□□ -1.56
CSMD3-201ENST00000297405 GINS4Q9BRT9 223 aa5.32□□□□□ -1.56
CSMD3-201ENST00000297405 ECT2Q9H8V3 914 aa5.32□□□□□ -1.56
CSMD3-201ENST00000297405 STMN3Q9NZ72 180 aa5.32□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms