RNA–Protein interactions for RNA: ENSMUST00000023352.8

Prkdc-201, Transcript of DNA-dependent protein kinase catalytic subunit, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Prkdc, Length 12,647 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Prkdc-201ENSMUST00000023352 Krtap17-1A2A5X6 109 aa1,44□□□□□ -2,18
Prkdc-201ENSMUST00000023352 Ush2AQ2QI47 5193 aa1,44□□□□□ -2,18
Prkdc-201ENSMUST00000023352 Fsip2A2ARZ3 6995 aa1,43□□□□□ -2,18
Prkdc-201ENSMUST00000023352 Lce1iQ9D6P5 149 aa1,43□□□□□ -2,18
Prkdc-201ENSMUST00000023352 Mdn1A2ANY6 5589 aaKnown RBP1,43□□□□□ -2,18
Prkdc-201ENSMUST00000023352 SspoQ8CG65 4998 aa1,42□□□□□ -2,18
Prkdc-201ENSMUST00000023352 A0A1Y7VLE6 161 aa1,41□□□□□ -2,18
Prkdc-201ENSMUST00000023352 Gm11569B1AQB1 180 aa1,4□□□□□ -2,19
Prkdc-201ENSMUST00000023352 Lce1gQ9D195 139 aa1,4□□□□□ -2,19
Prkdc-201ENSMUST00000023352 Lce1hQ9D6R3 140 aa1,39□□□□□ -2,19
Prkdc-201ENSMUST00000023352 Lce1a2Q9D1K4 149 aa1,39□□□□□ -2,19
Prkdc-201ENSMUST00000023352 Sprr2bO70554 98 aa1,37□□□□□ -2,19
Prkdc-201ENSMUST00000023352 Krtap4-6Q3V4B7 195 aa1,34□□□□□ -2,19
Prkdc-201ENSMUST00000023352 Muc5bE9Q5I3 4800 aa1,34□□□□□ -2,19
Prkdc-201ENSMUST00000023352 Mt4P47945 62 aa1,34□□□□□ -2,2
Prkdc-201ENSMUST00000023352 Gpr98Q8VHN7 6298 aaKnown RBP1,33□□□□□ -2,2
Prkdc-201ENSMUST00000023352 A030003K21RikA0A1Y7VIM3 128 aa1,33□□□□□ -2,2
Prkdc-201ENSMUST00000023352 Mt1P02802 61 aaKnown RBP1,32□□□□□ -2,2
Prkdc-201ENSMUST00000023352 Gm11596B1AQB0 205 aa1,3□□□□□ -2,2
Prkdc-201ENSMUST00000023352 Krtap4-1Q3UUY3 169 aa1,29□□□□□ -2,2
Prkdc-201ENSMUST00000023352 ObscnA2AAJ9 8891 aaKnown RBP1,28□□□□□ -2,2
Prkdc-201ENSMUST00000023352 Syne1Q6ZWR6 8799 aa1,26□□□□□ -2,21
Prkdc-201ENSMUST00000023352 Gm11564A2A4L9 201 aa1,26□□□□□ -2,21
Prkdc-201ENSMUST00000023352 Gm11563B1AQ90 168 aa1,26□□□□□ -2,21
Prkdc-201ENSMUST00000023352 Gm11595B1AQA7 289 aa1,26□□□□□ -2,21
Prkdc-201ENSMUST00000023352 Krtap4-8B1AQA8 209 aa1,26□□□□□ -2,21
Prkdc-201ENSMUST00000023352 Krtap4-9B1AQA9 244 aa1,25□□□□□ -2,21
Prkdc-201ENSMUST00000023352 Gm6217A0A1Y7VJK9 128 aa1,25□□□□□ -2,21
Prkdc-201ENSMUST00000023352 Krtap4-13Q9D7P3 165 aa1,24□□□□□ -2,21
Prkdc-201ENSMUST00000023352 Krtap6-3A0A087WQL6 57 aa1,24□□□□□ -2,21
Prkdc-201ENSMUST00000023352 2300003K06RikA2A4M0 262 aa1,23□□□□□ -2,21
Prkdc-201ENSMUST00000023352 A0A1Y7VJH8 109 aa1,23□□□□□ -2,21
Prkdc-201ENSMUST00000023352 A0A1Y7VJ07 166 aa1,23□□□□□ -2,21
Prkdc-201ENSMUST00000023352 Krtap4-7Q9D732 168 aa1,22□□□□□ -2,21
Prkdc-201ENSMUST00000023352 Krtap28-10A0A1Y7VP58 119 aa1,22□□□□□ -2,21
Prkdc-201ENSMUST00000023352 A030005K14RikA0A1Y7VNY1 122 aa1,21□□□□□ -2,22
Prkdc-201ENSMUST00000023352 Lce1a1Q9CQH5 143 aa1,21□□□□□ -2,22
Prkdc-201ENSMUST00000023352 Krtap28-13A0A087WQP5 138 aa1,2□□□□□ -2,22
Prkdc-201ENSMUST00000023352 DstQ91ZU6 7393 aaKnown RBP1,19□□□□□ -2,22
Prkdc-201ENSMUST00000023352 Kmt2dQ6PDK2 5588 aa1,18□□□□□ -2,22
Prkdc-201ENSMUST00000023352 Gm11639A0A1D5RLM8 5808 aa1,16□□□□□ -2,22
Prkdc-201ENSMUST00000023352 Gm11555B1AQ89 175 aa1,16□□□□□ -2,22
Prkdc-201ENSMUST00000023352 Gm7544A0A1Y7VJ58 118 aa1,16□□□□□ -2,22
Prkdc-201ENSMUST00000023352 Krtap4-16Q91W93 202 aa1,15□□□□□ -2,23
Prkdc-201ENSMUST00000023352 Lce1kJ3QP15 125 aa1,15□□□□□ -2,23
Prkdc-201ENSMUST00000023352 Macf1Q9QXZ0 7354 aaKnown RBP1,15□□□□□ -2,23
Prkdc-201ENSMUST00000023352 Muc16A0A140LJ72 8478 aa1,13□□□□□ -2,23
Prkdc-201ENSMUST00000023352 A030014E15RikA0A1Y7VJV2 120 aa1,12□□□□□ -2,23
Prkdc-201ENSMUST00000023352 A030005L19RikA0A1Y7VIU2 113 aa1,1□□□□□ -2,23
Prkdc-201ENSMUST00000023352 NebE9Q1W3 7152 aa1,1□□□□□ -2,23
Prkdc-201ENSMUST00000023352 Gm11554B1AQB2 190 aa1,09□□□□□ -2,23
Prkdc-201ENSMUST00000023352 Krtap20-2E9Q0A8 60 aa1,09□□□□□ -2,23
Prkdc-201ENSMUST00000023352 Krtap5-2Q9D5Z7 189 aa1,04□□□□□ -2,24
Prkdc-201ENSMUST00000023352 1110025L11RikO09048 78 aa1,02□□□□□ -2,25
Prkdc-201ENSMUST00000023352 Krtap6-5Q925H3 78 aa1,02□□□□□ -2,25
Prkdc-201ENSMUST00000023352 Hmcn1D3YXG0 5634 aa0,99□□□□□ -2,25
Prkdc-201ENSMUST00000023352 Gm4553A0A1B0GSA9 284 aa0,97□□□□□ -2,25
Prkdc-201ENSMUST00000023352 Gm10153A0A1B0GRL1 320 aa0,96□□□□□ -2,26
Prkdc-201ENSMUST00000023352 A0A286YCP9 139 aa0,95□□□□□ -2,26
Prkdc-201ENSMUST00000023352 Gm11568A2A4M2 211 aa0,95□□□□□ -2,26
Prkdc-201ENSMUST00000023352 Krtap9-1Q64526 186 aa0,95□□□□□ -2,26
Prkdc-201ENSMUST00000023352 Gm10229O08631 77 aa0,94□□□□□ -2,26
Prkdc-201ENSMUST00000023352 Gm45337A0A1B0GS71 263 aa0,93□□□□□ -2,26
Prkdc-201ENSMUST00000023352 Gm40460A0A1B0GR10 244 aa0,91□□□□□ -2,26
Prkdc-201ENSMUST00000023352 Gm7579A0A1B0GRJ4 243 aa0,91□□□□□ -2,26
Prkdc-201ENSMUST00000023352 Krtap5-5Q2TA51 241 aa0,91□□□□□ -2,26
Prkdc-201ENSMUST00000023352 Krtap5-4Q62220 223 aa0,91□□□□□ -2,26
Prkdc-201ENSMUST00000023352 Gm11559Q9D3H7 191 aa0,91□□□□□ -2,26
Prkdc-201ENSMUST00000023352 Muc19Q6PZE0 7524 aa0,91□□□□□ -2,26
Prkdc-201ENSMUST00000023352 AhnakE9Q616 5656 aaKnown RBP0,91□□□□□ -2,26
Prkdc-201ENSMUST00000023352 Phgr1Q8K0G7 91 aa0,86□□□□□ -2,27
Prkdc-201ENSMUST00000023352 Gm39115A0A1B0GSH7 232 aa0,86□□□□□ -2,27
Prkdc-201ENSMUST00000023352 Gm2431E9Q8S1 172 aa0,83□□□□□ -2,28
Prkdc-201ENSMUST00000023352 Krtap6-2O08884 159 aa0,77□□□□□ -2,29
Prkdc-201ENSMUST00000023352 Gm29735A0A1B0GT06 219 aa0,76□□□□□ -2,29
Prkdc-201ENSMUST00000023352 Gm45618A0A1B0GSA0 219 aa0,76□□□□□ -2,29
Prkdc-201ENSMUST00000023352 Krtap21-1Q925H4 128 aa0,76□□□□□ -2,29
Prkdc-201ENSMUST00000023352 Gm11567Q9D141 195 aa0,71□□□□□ -2,3
Prkdc-201ENSMUST00000023352 Krtap5-1Q64507 230 aa0,43□□□□□ -2,34
Prkdc-201ENSMUST00000023352 Gm4559A4IF42 199 aa0,39□□□□□ -2,35
Retrieved 80 of 22,080 RNA–protein pairs in 59,4 ms