RNA–Protein interactions for RNA: ENST00000588109.5

LIG3-210, Transcript of DNA ligase 3, humanhuman

TSL 4

Gene LIG3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-210ENST00000588109 TSHZ3Q63HK5 1081 aa6.46□□□□□ -1.38
LIG3-210ENST00000588109 OLFM4Q6UX06 510 aa6.46□□□□□ -1.38
LIG3-210ENST00000588109 Q6ZVU0 165 aa6.46□□□□□ -1.38
LIG3-210ENST00000588109 CYP2U1Q7Z449 544 aa6.46□□□□□ -1.38
LIG3-210ENST00000588109 VPS37DQ86XT2 251 aa6.46□□□□□ -1.38
LIG3-210ENST00000588109 PLEKHM2Q8IWE5 1019 aa6.46□□□□□ -1.38
LIG3-210ENST00000588109 XAGE2Q96GT9 111 aa6.46□□□□□ -1.38
LIG3-210ENST00000588109 AGBL1Q96MI9 1066 aa6.46□□□□□ -1.38
LIG3-210ENST00000588109 FHDC1Q9C0D6 1143 aaPredicted RBP6.46□□□□□ -1.38
LIG3-210ENST00000588109 GGA1Q9UJY5 639 aa6.46□□□□□ -1.38
LIG3-210ENST00000588109 LEMD3Q9Y2U8 911 aa6.46□□□□□ -1.38
LIG3-210ENST00000588109 A0A1B0GUL6 1792 aa6.46□□□□□ -1.38
LIG3-210ENST00000588109 TTC41PQ6P2S7 1318 aa6.46□□□□□ -1.38
LIG3-210ENST00000588109 SLX4Q8IY92 1834 aa6.46□□□□□ -1.38
LIG3-210ENST00000588109 LRRC37AA6NMS7 1700 aa6.45□□□□□ -1.38
LIG3-210ENST00000588109 KIAA1551Q9HCM1 1747 aa6.45□□□□□ -1.38
LIG3-210ENST00000588109 MAN1A2O60476 641 aa6.45□□□□□ -1.38
LIG3-210ENST00000588109 LILRA1O75019 489 aa6.45□□□□□ -1.38
LIG3-210ENST00000588109 GLRX3O76003 335 aaKnown RBP6.45□□□□□ -1.38
LIG3-210ENST00000588109 FGFR2P21802 821 aa6.45□□□□□ -1.38
LIG3-210ENST00000588109 KCNA3P22001 575 aa6.45□□□□□ -1.38
LIG3-210ENST00000588109 ADD1P35611 737 aaKnown RBP6.45□□□□□ -1.38
LIG3-210ENST00000588109 CCDC93Q567U6 631 aa6.45□□□□□ -1.38
LIG3-210ENST00000588109 SOGA3Q5TF21 947 aa6.45□□□□□ -1.38
LIG3-210ENST00000588109 SLC51AQ86UW1 340 aa6.45□□□□□ -1.38
LIG3-210ENST00000588109 PHTF2Q8N3S3 785 aa6.45□□□□□ -1.38
LIG3-210ENST00000588109 PLPP7Q8NBV4 271 aa6.45□□□□□ -1.38
LIG3-210ENST00000588109 NLGN2Q8NFZ4 835 aa6.45□□□□□ -1.38
LIG3-210ENST00000588109 TBC1D16Q8TBP0 767 aa6.45□□□□□ -1.38
LIG3-210ENST00000588109 TRIM47Q96LD4 638 aa6.45□□□□□ -1.38
LIG3-210ENST00000588109 ZNF395Q9H8N7 513 aaPredicted RBP6.45□□□□□ -1.38
LIG3-210ENST00000588109 GNL3LQ9NVN8 582 aaKnown RBP6.45□□□□□ -1.38
LIG3-210ENST00000588109 STAP2Q9UGK3 403 aa6.45□□□□□ -1.38
LIG3-210ENST00000588109 BCS1LQ9Y276 419 aa6.45□□□□□ -1.38
LIG3-210ENST00000588109 AOX1Q06278 1338 aa6.45□□□□□ -1.38
LIG3-210ENST00000588109 ARAP2Q8WZ64 1704 aa6.45□□□□□ -1.38
LIG3-210ENST00000588109 POTECB2RU33 542 aa6.44□□□□□ -1.38
LIG3-210ENST00000588109 LZTS3O60299 673 aaPredicted RBP6.44□□□□□ -1.38
LIG3-210ENST00000588109 FRAT2O75474 233 aaPredicted RBP6.44□□□□□ -1.38
LIG3-210ENST00000588109 UQCRFS1P1P0C7P4 283 aa6.44□□□□□ -1.38
LIG3-210ENST00000588109 KLRK1P26718 216 aa6.44□□□□□ -1.38
LIG3-210ENST00000588109 PTGIRP43119 386 aa6.44□□□□□ -1.38
LIG3-210ENST00000588109 GYG1P46976 350 aa6.44□□□□□ -1.38
LIG3-210ENST00000588109 ERVK-9P63128 1117 aa6.44□□□□□ -1.38
LIG3-210ENST00000588109 TSGA10IPQ3SY00 556 aa6.44□□□□□ -1.38
LIG3-210ENST00000588109 TTC22Q5TAA0 569 aa6.44□□□□□ -1.38
LIG3-210ENST00000588109 CCDC102BQ68D86 513 aa6.44□□□□□ -1.38
LIG3-210ENST00000588109 ZNF804AQ7Z570 1209 aa6.44□□□□□ -1.38
LIG3-210ENST00000588109 RTKN2Q8IZC4 609 aa6.44□□□□□ -1.38
LIG3-210ENST00000588109 SUPT20HQ8NEM7 779 aa6.44□□□□□ -1.38
LIG3-210ENST00000588109 GLMNQ92990 594 aa6.44□□□□□ -1.38
LIG3-210ENST00000588109 GPR101Q96P66 508 aaPredicted RBP6.44□□□□□ -1.38
LIG3-210ENST00000588109 EYA3Q99504 573 aa6.44□□□□□ -1.38
LIG3-210ENST00000588109 DNAJC2Q99543 621 aaKnown RBP6.44□□□□□ -1.38
LIG3-210ENST00000588109 ZC3H12CQ9C0D7 883 aaKnown RBP6.44□□□□□ -1.38
LIG3-210ENST00000588109 BOLA2Q9H3K6 86 aa6.44□□□□□ -1.38
LIG3-210ENST00000588109 OSBPL3Q9H4L5 887 aa6.44□□□□□ -1.38
LIG3-210ENST00000588109 POLMQ9NP87 494 aaPredicted RBP6.44□□□□□ -1.38
LIG3-210ENST00000588109 SALL3Q9BXA9 1300 aa6.44□□□□□ -1.38
LIG3-210ENST00000588109 MED23Q9ULK4 1368 aa6.44□□□□□ -1.38
LIG3-210ENST00000588109 WTIPA6NIX2 430 aaPredicted RBP6.43□□□□□ -1.38
LIG3-210ENST00000588109 MEN1O00255 615 aa6.43□□□□□ -1.38
LIG3-210ENST00000588109 MAP4K4O95819 1239 aaPredicted RBP6.43□□□□□ -1.38
LIG3-210ENST00000588109 ATP5JP18859 108 aa6.43□□□□□ -1.38
LIG3-210ENST00000588109 HIBADHP31937 336 aaKnown RBP6.43□□□□□ -1.38
LIG3-210ENST00000588109 PHKA1P46020 1223 aa6.43□□□□□ -1.38
LIG3-210ENST00000588109 FKBP4Q02790 459 aaKnown RBP eCLIP6.43□□□□□ -1.38
LIG3-210ENST00000588109 EML3Q32P44 896 aa6.43□□□□□ -1.38
LIG3-210ENST00000588109 BMP2KLQ5H9B9 411 aa6.43□□□□□ -1.38
LIG3-210ENST00000588109 CNTROBQ8N137 903 aa6.43□□□□□ -1.38
LIG3-210ENST00000588109 PI4K2BQ8TCG2 481 aa6.43□□□□□ -1.38
LIG3-210ENST00000588109 C7orf43Q8WVR3 580 aa6.43□□□□□ -1.38
LIG3-210ENST00000588109 RILPL2Q969X0 211 aa6.43□□□□□ -1.38
LIG3-210ENST00000588109 SYT17Q9BSW7 474 aa6.43□□□□□ -1.38
LIG3-210ENST00000588109 POLLQ9UGP5 575 aa6.43□□□□□ -1.38
LIG3-210ENST00000588109 IQSEC3Q9UPP2 1182 aaPredicted RBP6.43□□□□□ -1.38
LIG3-210ENST00000588109 BRCA1P38398 1863 aaKnown RBP6.43□□□□□ -1.38
LIG3-210ENST00000588109 LTBP1Q14766 1721 aa6.42□□□□□ -1.38
LIG3-210ENST00000588109 TTLL8A6PVC2 850 aa6.42□□□□□ -1.38
LIG3-210ENST00000588109 GOLIM4O00461 696 aa6.42□□□□□ -1.38
LIG3-210ENST00000588109 SPINT1O43278 529 aa6.42□□□□□ -1.38
LIG3-210ENST00000588109 PPIP5K2O43314 1243 aa6.42□□□□□ -1.38
LIG3-210ENST00000588109 SNRPBP14678 240 aaKnown RBP6.42□□□□□ -1.38
LIG3-210ENST00000588109 GSPT1P15170 499 aaKnown RBP6.42□□□□□ -1.38
LIG3-210ENST00000588109 ARID4AP29374 1257 aaPredicted RBP6.42□□□□□ -1.38
LIG3-210ENST00000588109 SCTRP47872 440 aa6.42□□□□□ -1.38
LIG3-210ENST00000588109 CHAF1AQ13111 956 aaPredicted RBP6.42□□□□□ -1.38
LIG3-210ENST00000588109 CASC1Q6TDU7 716 aa6.42□□□□□ -1.38
LIG3-210ENST00000588109 C15orf52Q6ZUT6 534 aaKnown RBP6.42□□□□□ -1.38
LIG3-210ENST00000588109 FBXO33Q7Z6M2 555 aa6.42□□□□□ -1.38
LIG3-210ENST00000588109 TXNRD3Q86VQ6 643 aa6.42□□□□□ -1.38
LIG3-210ENST00000588109 SPATA5Q8NB90 893 aa6.42□□□□□ -1.38
LIG3-210ENST00000588109 PPIL4Q8WUA2 492 aaKnown RBP eCLIP6.42□□□□□ -1.38
LIG3-210ENST00000588109 EVI5LQ96CN4 794 aa6.42□□□□□ -1.38
LIG3-210ENST00000588109 ZNF512BQ96KM6 892 aaPredicted RBP6.42□□□□□ -1.38
LIG3-210ENST00000588109 FAM84BQ96KN1 310 aaPredicted RBP6.42□□□□□ -1.38
LIG3-210ENST00000588109 INSM2Q96T92 566 aaPredicted RBP6.42□□□□□ -1.38
LIG3-210ENST00000588109 HAUS7Q99871 368 aa6.42□□□□□ -1.38
LIG3-210ENST00000588109 FSD1Q9BTV5 496 aa6.42□□□□□ -1.38
LIG3-210ENST00000588109 RTFDC1Q9BY42 306 aaPredicted RBP6.42□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms