RNA–Protein interactions for RNA: ENST00000559989.1

CSPG4P12-202, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 12, humanhuman

TSL 1 (best) BASIC

Gene CSPG4P12, Length 7,790 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P12-202ENST00000559989 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP15.28■□□□□ 0.04
CSPG4P12-202ENST00000559989 ARHGAP6O43182 974 aa15.28■□□□□ 0.04
CSPG4P12-202ENST00000559989 TNNI2P48788 182 aa15.28■□□□□ 0.04
CSPG4P12-202ENST00000559989 DEUP1Q05D60 604 aa15.28■□□□□ 0.04
CSPG4P12-202ENST00000559989 FAM186BQ8IYM0 893 aa15.28■□□□□ 0.04
CSPG4P12-202ENST00000559989 CSRNP1Q96S65 589 aa15.28■□□□□ 0.04
CSPG4P12-202ENST00000559989 HARSP12081 509 aaKnown RBP15.28■□□□□ 0.04
CSPG4P12-202ENST00000559989 CTNNA1P35221 906 aaKnown RBP15.28■□□□□ 0.04
CSPG4P12-202ENST00000559989 PRIM1P49642 420 aaKnown RBP15.28■□□□□ 0.04
CSPG4P12-202ENST00000559989 CCDC92Q53HC0 331 aaPredicted RBP15.28■□□□□ 0.04
CSPG4P12-202ENST00000559989 FCHSD1Q86WN1 690 aa15.28■□□□□ 0.04
CSPG4P12-202ENST00000559989 TRIM42Q8IWZ5 723 aa15.28■□□□□ 0.04
CSPG4P12-202ENST00000559989 C16orf71Q8IYS4 520 aaPredicted RBP15.28■□□□□ 0.04
CSPG4P12-202ENST00000559989 BRF1Q92994 677 aa15.28■□□□□ 0.04
CSPG4P12-202ENST00000559989 CADPSQ9ULU8 1353 aa15.28■□□□□ 0.04
CSPG4P12-202ENST00000559989 GTPBP10A4D1E9 387 aaKnown RBP15.28■□□□□ 0.04
CSPG4P12-202ENST00000559989 KRT82Q9NSB4 513 aa15.28■□□□□ 0.04
CSPG4P12-202ENST00000559989 ARHGDIAP52565 204 aa15.27■□□□□ 0.04
CSPG4P12-202ENST00000559989 RNASELQ05823 741 aaKnown RBP15.27■□□□□ 0.04
CSPG4P12-202ENST00000559989 PRPSAP1Q14558 356 aa15.27■□□□□ 0.04
CSPG4P12-202ENST00000559989 ZNF622Q969S3 477 aaKnown RBP eCLIP15.27■□□□□ 0.04
CSPG4P12-202ENST00000559989 HAUS3Q68CZ6 603 aa15.27■□□□□ 0.04
CSPG4P12-202ENST00000559989 ZNF804AQ7Z570 1209 aa15.27■□□□□ 0.04
CSPG4P12-202ENST00000559989 TBC1D32Q96NH3 1257 aa15.27■□□□□ 0.04
CSPG4P12-202ENST00000559989 TRIM15Q9C019 465 aa15.27■□□□□ 0.04
CSPG4P12-202ENST00000559989 ANAPC5Q9UJX4 755 aa15.27■□□□□ 0.04
CSPG4P12-202ENST00000559989 PRPF6O94906 941 aaKnown RBP15.27■□□□□ 0.03
CSPG4P12-202ENST00000559989 CCDC159P0C7I6 412 aa15.27■□□□□ 0.03
CSPG4P12-202ENST00000559989 PLCG2P16885 1265 aa15.27■□□□□ 0.03
CSPG4P12-202ENST00000559989 LRRC8CQ8TDW0 803 aa15.27■□□□□ 0.03
CSPG4P12-202ENST00000559989 FRMD3A2A2Y4 597 aa15.27■□□□□ 0.03
CSPG4P12-202ENST00000559989 NOP14P78316 857 aaKnown RBP15.27■□□□□ 0.03
CSPG4P12-202ENST00000559989 TMTC3Q6ZXV5 915 aa15.27■□□□□ 0.03
CSPG4P12-202ENST00000559989 ECE1P42892 770 aa15.27■□□□□ 0.03
CSPG4P12-202ENST00000559989 SUCLA2Q9P2R7 463 aaPredicted RBP15.27■□□□□ 0.03
CSPG4P12-202ENST00000559989 ANKRD50Q9ULJ7 1429 aa15.27■□□□□ 0.03
CSPG4P12-202ENST00000559989 NEK2P51955 445 aa15.26■□□□□ 0.03
CSPG4P12-202ENST00000559989 BRDTQ58F21 947 aaPredicted RBP15.26■□□□□ 0.03
CSPG4P12-202ENST00000559989 FLOT2Q14254 428 aa15.26■□□□□ 0.03
CSPG4P12-202ENST00000559989 MAP7D3Q8IWC1 876 aa15.26■□□□□ 0.03
CSPG4P12-202ENST00000559989 CARD6Q9BX69 1037 aa15.26■□□□□ 0.03
CSPG4P12-202ENST00000559989 NSD3Q9BZ95 1437 aa15.26■□□□□ 0.03
CSPG4P12-202ENST00000559989 KRT8P05787 483 aa15.26■□□□□ 0.03
CSPG4P12-202ENST00000559989 LONRF2Q1L5Z9 754 aa15.26■□□□□ 0.03
CSPG4P12-202ENST00000559989 THEMISQ8N1K5 641 aaPredicted RBP15.26■□□□□ 0.03
CSPG4P12-202ENST00000559989 VEZTQ9HBM0 779 aa15.26■□□□□ 0.03
CSPG4P12-202ENST00000559989 PNMA2Q9UL42 364 aa15.26■□□□□ 0.03
CSPG4P12-202ENST00000559989 STX1BP61266 288 aa15.26■□□□□ 0.03
CSPG4P12-202ENST00000559989 SKA2Q8WVK7 121 aaPredicted RBP15.26■□□□□ 0.03
CSPG4P12-202ENST00000559989 MAP3K7O43318 606 aa15.26■□□□□ 0.03
CSPG4P12-202ENST00000559989 GFAPP14136 432 aa15.26■□□□□ 0.03
CSPG4P12-202ENST00000559989 PDE4DQ08499 809 aa15.26■□□□□ 0.03
CSPG4P12-202ENST00000559989 C16orf87Q6PH81 154 aa15.26■□□□□ 0.03
CSPG4P12-202ENST00000559989 PDZD4Q76G19 769 aaPredicted RBP15.26■□□□□ 0.03
CSPG4P12-202ENST00000559989 TRIM50Q86XT4 487 aa15.26■□□□□ 0.03
CSPG4P12-202ENST00000559989 IQCDQ96DY2 449 aa15.26■□□□□ 0.03
CSPG4P12-202ENST00000559989 SLC12A5Q9H2X9 1139 aa15.26■□□□□ 0.03
CSPG4P12-202ENST00000559989 IFT122Q9HBG6 1241 aa15.26■□□□□ 0.03
CSPG4P12-202ENST00000559989 AMFRQ9UKV5 643 aa15.26■□□□□ 0.03
CSPG4P12-202ENST00000559989 SF3A3Q12874 501 aaKnown RBP eCLIP15.26■□□□□ 0.03
CSPG4P12-202ENST00000559989 TMTC1Q8IUR5 882 aa15.26■□□□□ 0.03
CSPG4P12-202ENST00000559989 HACE1Q8IYU2 909 aa15.26■□□□□ 0.03
CSPG4P12-202ENST00000559989 CAPS2Q9BXY5 557 aa15.26■□□□□ 0.03
CSPG4P12-202ENST00000559989 PICALMQ13492 652 aa15.25■□□□□ 0.03
CSPG4P12-202ENST00000559989 MPRIPQ6WCQ1 1025 aa15.25■□□□□ 0.03
CSPG4P12-202ENST00000559989 TEKT1Q969V4 418 aa15.25■□□□□ 0.03
CSPG4P12-202ENST00000559989 VPS16Q9H269 839 aa15.25■□□□□ 0.03
CSPG4P12-202ENST00000559989 PIK3R4Q99570 1358 aa15.25■□□□□ 0.03
CSPG4P12-202ENST00000559989 ZBBXA8MT70 800 aa15.25■□□□□ 0.03
CSPG4P12-202ENST00000559989 GNGT1P63211 74 aa15.25■□□□□ 0.03
CSPG4P12-202ENST00000559989 ASPHQ12797 758 aa15.25■□□□□ 0.03
CSPG4P12-202ENST00000559989 ELF2Q15723 593 aa15.25■□□□□ 0.03
CSPG4P12-202ENST00000559989 SUN1O94901 812 aa15.25■□□□□ 0.03
CSPG4P12-202ENST00000559989 BSPRYQ5W0U4 402 aa15.25■□□□□ 0.03
CSPG4P12-202ENST00000559989 NVLO15381 856 aaKnown RBP15.25■□□□□ 0.03
CSPG4P12-202ENST00000559989 NOD1Q9Y239 953 aa15.25■□□□□ 0.03
CSPG4P12-202ENST00000559989 RFC4P35249 363 aa15.25■□□□□ 0.03
CSPG4P12-202ENST00000559989 NOP9Q86U38 636 aaKnown RBP15.25■□□□□ 0.03
CSPG4P12-202ENST00000559989 SNX1Q13596 522 aa15.25■□□□□ 0.03
CSPG4P12-202ENST00000559989 DDX41Q9UJV9 622 aaKnown RBP15.25■□□□□ 0.03
CSPG4P12-202ENST00000559989 ANGPTL2Q9UKU9 493 aa15.25■□□□□ 0.03
CSPG4P12-202ENST00000559989 DAPK1P53355 1430 aa15.24■□□□□ 0.03
CSPG4P12-202ENST00000559989 A0A1B0GW55 424 aa15.24■□□□□ 0.03
CSPG4P12-202ENST00000559989 THAP12O43422 761 aa15.24■□□□□ 0.03
CSPG4P12-202ENST00000559989 CCNT1O60563 726 aaKnown RBP15.24■□□□□ 0.03
CSPG4P12-202ENST00000559989 DUX4L2P0CJ85 424 aa15.24■□□□□ 0.03
CSPG4P12-202ENST00000559989 DUX4L3P0CJ86 424 aa15.24■□□□□ 0.03
CSPG4P12-202ENST00000559989 DUX4L4P0CJ87 422 aa15.24■□□□□ 0.03
CSPG4P12-202ENST00000559989 DUX4L5P0CJ88 424 aa15.24■□□□□ 0.03
CSPG4P12-202ENST00000559989 DUX4L6P0CJ89 424 aa15.24■□□□□ 0.03
CSPG4P12-202ENST00000559989 DUX4L7P0CJ90 424 aa15.24■□□□□ 0.03
CSPG4P12-202ENST00000559989 DUX4Q9UBX2 424 aa15.24■□□□□ 0.03
CSPG4P12-202ENST00000559989 SLC13A4Q9UKG4 626 aa15.24■□□□□ 0.03
CSPG4P12-202ENST00000559989 RPSAP08865 295 aaKnown RBP15.24■□□□□ 0.03
CSPG4P12-202ENST00000559989 GPTP24298 496 aa15.24■□□□□ 0.03
CSPG4P12-202ENST00000559989 RARSP54136 660 aaKnown RBP15.24■□□□□ 0.03
CSPG4P12-202ENST00000559989 RUNDC3BQ96NL0 473 aa15.24■□□□□ 0.03
CSPG4P12-202ENST00000559989 TUBB6Q9BUF5 446 aa15.24■□□□□ 0.03
CSPG4P12-202ENST00000559989 RBM8AQ9Y5S9 174 aaKnown RBP15.24■□□□□ 0.03
CSPG4P12-202ENST00000559989 HFM1A2PYH4 1435 aa15.24■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms