RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 KIAA0825Q8IV33 1275 aa16.97■□□□□ 0.31
CUX1-214ENST00000550008 STRBPQ96SI9 672 aaKnown RBP16.97■□□□□ 0.31
CUX1-214ENST00000550008 EYA3Q99504 573 aa16.97■□□□□ 0.31
CUX1-214ENST00000550008 TRIM37O94972 964 aa16.97■□□□□ 0.31
CUX1-214ENST00000550008 CDC25AP30304 524 aa16.97■□□□□ 0.31
CUX1-214ENST00000550008 GRAMD1CQ8IYS0 662 aa16.97■□□□□ 0.31
CUX1-214ENST00000550008 TAF4BQ92750 862 aa16.97■□□□□ 0.31
CUX1-214ENST00000550008 GUCA1BQ9UMX6 200 aa16.97■□□□□ 0.31
CUX1-214ENST00000550008 SPAG1Q07617 926 aa16.96■□□□□ 0.31
CUX1-214ENST00000550008 CTAGE1Q96RT6 745 aa16.96■□□□□ 0.31
CUX1-214ENST00000550008 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.96■□□□□ 0.31
CUX1-214ENST00000550008 ERVV-1B6SEH8 477 aa16.96■□□□□ 0.31
CUX1-214ENST00000550008 IBSPP21815 317 aaPredicted RBP16.96■□□□□ 0.31
CUX1-214ENST00000550008 DYMQ7RTS9 669 aa16.96■□□□□ 0.31
CUX1-214ENST00000550008 LRRC47Q8N1G4 583 aaKnown RBP16.96■□□□□ 0.31
CUX1-214ENST00000550008 IGSF22Q8N9C0 903 aa16.96■□□□□ 0.31
CUX1-214ENST00000550008 BAG1Q99933 345 aaPredicted RBP16.96■□□□□ 0.31
CUX1-214ENST00000550008 PCDHA5Q9Y5H7 936 aa16.96■□□□□ 0.31
CUX1-214ENST00000550008 DIP2BQ9P265 1576 aa16.96■□□□□ 0.31
CUX1-214ENST00000550008 SPDYE3A6NKU9 549 aa16.96■□□□□ 0.31
CUX1-214ENST00000550008 APBA3O96018 575 aa16.96■□□□□ 0.31
CUX1-214ENST00000550008 NOP2P46087 812 aaKnown RBP16.96■□□□□ 0.31
CUX1-214ENST00000550008 PUF60Q9UHX1 559 aaKnown RBP16.96■□□□□ 0.31
CUX1-214ENST00000550008 FRMPD2Q68DX3 1309 aaPredicted RBP16.96■□□□□ 0.31
CUX1-214ENST00000550008 MED23Q9ULK4 1368 aa16.96■□□□□ 0.31
CUX1-214ENST00000550008 USO1O60763 962 aaKnown RBP16.96■□□□□ 0.3
CUX1-214ENST00000550008 KIF23Q02241 960 aaPredicted RBP16.96■□□□□ 0.3
CUX1-214ENST00000550008 TNIP1Q15025 636 aa16.96■□□□□ 0.3
CUX1-214ENST00000550008 INF2Q27J81 1249 aa16.96■□□□□ 0.3
CUX1-214ENST00000550008 SYCP3Q8IZU3 236 aa16.96■□□□□ 0.3
CUX1-214ENST00000550008 CELF1Q92879 486 aaKnown RBP16.96■□□□□ 0.3
CUX1-214ENST00000550008 TAB2Q9NYJ8 693 aa16.96■□□□□ 0.3
CUX1-214ENST00000550008 USP17L8P0C7I0 530 aa16.95■□□□□ 0.3
CUX1-214ENST00000550008 DYNLL2Q96FJ2 89 aa16.95■□□□□ 0.3
CUX1-214ENST00000550008 ARHGEF28Q8N1W1 1705 aaKnown RBP16.95■□□□□ 0.3
CUX1-214ENST00000550008 FAM170AA1A519 330 aa16.95■□□□□ 0.3
CUX1-214ENST00000550008 TBCAO75347 108 aaKnown RBP16.95■□□□□ 0.3
CUX1-214ENST00000550008 PDE4DQ08499 809 aa16.95■□□□□ 0.3
CUX1-214ENST00000550008 PLS1Q14651 629 aa16.95■□□□□ 0.3
CUX1-214ENST00000550008 RABL6Q3YEC7 729 aaPredicted RBP16.95■□□□□ 0.3
CUX1-214ENST00000550008 WWC2Q6AWC2 1192 aa16.95■□□□□ 0.3
CUX1-214ENST00000550008 CGNQ9P2M7 1197 aaKnown RBP16.95■□□□□ 0.3
CUX1-214ENST00000550008 SLU7O95391 586 aaKnown RBP16.95■□□□□ 0.3
CUX1-214ENST00000550008 CCDC175P0C221 793 aa16.95■□□□□ 0.3
CUX1-214ENST00000550008 CMA1P23946 247 aa16.95■□□□□ 0.3
CUX1-214ENST00000550008 SSR1P43307 286 aaKnown RBP16.95■□□□□ 0.3
CUX1-214ENST00000550008 FANCLQ9NW38 375 aa16.95■□□□□ 0.3
CUX1-214ENST00000550008 BIN2Q9UBW5 565 aaPredicted RBP16.95■□□□□ 0.3
CUX1-214ENST00000550008 ZBTB21Q9ULJ3 1066 aa16.95■□□□□ 0.3
CUX1-214ENST00000550008 PRDX5P30044 214 aa16.94■□□□□ 0.3
CUX1-214ENST00000550008 ADKP55263 362 aaKnown RBP16.94■□□□□ 0.3
CUX1-214ENST00000550008 LINC00301Q8NCQ3 95 aa16.94■□□□□ 0.3
CUX1-214ENST00000550008 SPAG5Q96R06 1193 aa16.94■□□□□ 0.3
CUX1-214ENST00000550008 RTEL1Q9NZ71 1219 aa16.94■□□□□ 0.3
CUX1-214ENST00000550008 RCOR1Q9UKL0 485 aa16.94■□□□□ 0.3
CUX1-214ENST00000550008 SOS2Q07890 1332 aaPredicted RBP16.94■□□□□ 0.3
CUX1-214ENST00000550008 PGBD1Q96JS3 809 aa16.94■□□□□ 0.3
CUX1-214ENST00000550008 SH2B2O14492 632 aaPredicted RBP16.94■□□□□ 0.3
CUX1-214ENST00000550008 BTDP43251 543 aa16.94■□□□□ 0.3
CUX1-214ENST00000550008 SP4Q02446 784 aa16.94■□□□□ 0.3
CUX1-214ENST00000550008 GOLGA8FQ08AF8 430 aa16.94■□□□□ 0.3
CUX1-214ENST00000550008 GOLGA8DPQ0D2H9 430 aa16.94■□□□□ 0.3
CUX1-214ENST00000550008 ZNF569Q5MCW4 686 aa16.94■□□□□ 0.3
CUX1-214ENST00000550008 FAM114A1Q8IWE2 563 aa16.94■□□□□ 0.3
CUX1-214ENST00000550008 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP16.94■□□□□ 0.38e-7■■□□□ 12.7
CUX1-214ENST00000550008 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.94■□□□□ 0.3
CUX1-214ENST00000550008 USH1GQ495M9 461 aa16.93■□□□□ 0.3
CUX1-214ENST00000550008 CYB5R4Q7L1T6 521 aa16.93■□□□□ 0.3
CUX1-214ENST00000550008 USP40Q9NVE5 1235 aa16.93■□□□□ 0.3
CUX1-214ENST00000550008 TBC1D7Q9P0N9 293 aa16.93■□□□□ 0.3
CUX1-214ENST00000550008 TMCO5BA8MYB1 307 aa16.93■□□□□ 0.3
CUX1-214ENST00000550008 PTGDRQ13258 359 aa16.93■□□□□ 0.3
CUX1-214ENST00000550008 SLC1A4P43007 532 aa16.93■□□□□ 0.3
CUX1-214ENST00000550008 ARPP21Q9UBL0 812 aaPredicted RBP16.93■□□□□ 0.3
CUX1-214ENST00000550008 SYNRGQ9UMZ2 1314 aa16.93■□□□□ 0.3
CUX1-214ENST00000550008 KLRF2D3W0D1 207 aa16.93■□□□□ 0.3
CUX1-214ENST00000550008 CHMP2AO43633 222 aa16.93■□□□□ 0.3
CUX1-214ENST00000550008 TTLL12Q14166 644 aaPredicted RBP16.93■□□□□ 0.3
CUX1-214ENST00000550008 SLC39A14Q15043 492 aa16.93■□□□□ 0.3
CUX1-214ENST00000550008 CAPZA3Q96KX2 299 aa16.93■□□□□ 0.3
CUX1-214ENST00000550008 SPATA31D1Q6ZQQ2 1576 aa16.92■□□□□ 0.3
CUX1-214ENST00000550008 GOLGA6L9A6NEM1 432 aa16.92■□□□□ 0.3
CUX1-214ENST00000550008 EIF3JO75822 258 aaKnown RBP16.92■□□□□ 0.3
CUX1-214ENST00000550008 KIF20AO95235 890 aa16.92■□□□□ 0.3
CUX1-214ENST00000550008 SMYD4Q8IYR2 804 aaPredicted RBP16.92■□□□□ 0.3
CUX1-214ENST00000550008 CRACR2AQ9BSW2 395 aa16.92■□□□□ 0.3
CUX1-214ENST00000550008 ECM2O94769 699 aaPredicted RBP16.92■□□□□ 0.3
CUX1-214ENST00000550008 CYP2D6P10635 497 aa16.92■□□□□ 0.3
CUX1-214ENST00000550008 MCM6Q14566 821 aa16.92■□□□□ 0.3
CUX1-214ENST00000550008 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.92■□□□□ 0.3
CUX1-214ENST00000550008 MLKLQ8NB16 471 aa16.92■□□□□ 0.3
CUX1-214ENST00000550008 LUC7L2Q9Y383 392 aaKnown RBP16.92■□□□□ 0.3
CUX1-214ENST00000550008 SMCO2A6NFE2 343 aa16.92■□□□□ 0.3
CUX1-214ENST00000550008 NONOQ15233 471 aaKnown RBP eCLIP16.92■□□□□ 0.31e-6■■■□□ 16.7
CUX1-214ENST00000550008 NEDD4P46934 1319 aa16.92■□□□□ 0.3
CUX1-214ENST00000550008 AKR1B15C9JRZ8 316 aaPredicted RBP16.91■□□□□ 0.3
CUX1-214ENST00000550008 TBC1D8BQ0IIM8 1120 aa16.91■□□□□ 0.3
CUX1-214ENST00000550008 SCG2P13521 617 aa16.91■□□□□ 0.3
CUX1-214ENST00000550008 HMGB2P26583 209 aaKnown RBP16.91■□□□□ 0.3
CUX1-214ENST00000550008 PAFAH1B1P43034 410 aa16.91■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms