RNA–Protein interactions for RNA: ENST00000460333.5

VPS13D-202, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 4,910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-202ENST00000460333 PHKA1P46020 1223 aa6.99□□□□□ -1.29
VPS13D-202ENST00000460333 SF3B3Q15393 1217 aaKnown RBP6.99□□□□□ -1.29
VPS13D-202ENST00000460333 ICE2Q659A1 982 aa6.99□□□□□ -1.29
VPS13D-202ENST00000460333 WDR66Q8TBY9 1149 aa6.99□□□□□ -1.29
VPS13D-202ENST00000460333 AFDNP55196 1824 aaKnown RBP6.99□□□□□ -1.29
VPS13D-202ENST00000460333 MED23Q9ULK4 1368 aa6.99□□□□□ -1.29
VPS13D-202ENST00000460333 MINDY4BA8MYZ0 360 aa6.99□□□□□ -1.29
VPS13D-202ENST00000460333 E7EWF7 191 aa6.99□□□□□ -1.29
VPS13D-202ENST00000460333 MBD4O95243 580 aa6.99□□□□□ -1.29
VPS13D-202ENST00000460333 CPA1P15085 419 aa6.99□□□□□ -1.29
VPS13D-202ENST00000460333 SH3BGRP55822 239 aaPredicted RBP6.99□□□□□ -1.29
VPS13D-202ENST00000460333 CHMP4BP1P59074 171 aa6.99□□□□□ -1.29
VPS13D-202ENST00000460333 IKQ13123 557 aaPredicted RBP6.99□□□□□ -1.29
VPS13D-202ENST00000460333 GRM1Q13255 1194 aa6.99□□□□□ -1.29
VPS13D-202ENST00000460333 TMEM67Q5HYA8 995 aa6.99□□□□□ -1.29
VPS13D-202ENST00000460333 TMC4Q7Z404 712 aa6.99□□□□□ -1.29
VPS13D-202ENST00000460333 RPAINQ86UA6 219 aa6.99□□□□□ -1.29
VPS13D-202ENST00000460333 ATRIPQ8WXE1 791 aa6.99□□□□□ -1.29
VPS13D-202ENST00000460333 EXOC4Q96A65 974 aa6.99□□□□□ -1.29
VPS13D-202ENST00000460333 SEC62Q99442 399 aaKnown RBP6.99□□□□□ -1.29
VPS13D-202ENST00000460333 ZSWIM4Q9H7M6 989 aa6.99□□□□□ -1.29
VPS13D-202ENST00000460333 CBX8Q9HC52 389 aa6.99□□□□□ -1.29
VPS13D-202ENST00000460333 MED4Q9NPJ6 270 aa6.99□□□□□ -1.29
VPS13D-202ENST00000460333 SEC31BQ9NQW1 1179 aa6.99□□□□□ -1.29
VPS13D-202ENST00000460333 SLIT2O94813 1529 aa6.99□□□□□ -1.29
VPS13D-202ENST00000460333 NTSR2O95665 410 aa6.99□□□□□ -1.29
VPS13D-202ENST00000460333 KRT83P78385 493 aa6.99□□□□□ -1.29
VPS13D-202ENST00000460333 CCDC178Q5BJE1 867 aa6.99□□□□□ -1.29
VPS13D-202ENST00000460333 AP1ARQ63HQ0 302 aa6.99□□□□□ -1.29
VPS13D-202ENST00000460333 C17orf53Q8N3J3 647 aaPredicted RBP6.99□□□□□ -1.29
VPS13D-202ENST00000460333 LINC00116Q8NCU8 138 aa6.99□□□□□ -1.29
VPS13D-202ENST00000460333 ESR2Q92731 530 aa6.99□□□□□ -1.29
VPS13D-202ENST00000460333 TCEANC2Q96MN5 208 aa6.99□□□□□ -1.29
VPS13D-202ENST00000460333 DDX41Q9UJV9 622 aaKnown RBP6.99□□□□□ -1.29
VPS13D-202ENST00000460333 RPAP1Q9BWH6 1393 aaPredicted RBP6.99□□□□□ -1.29
VPS13D-202ENST00000460333 KLF18A0A0U1RQI7 1052 aa6.98□□□□□ -1.29
VPS13D-202ENST00000460333 ARID4AP29374 1257 aaPredicted RBP6.98□□□□□ -1.29
VPS13D-202ENST00000460333 USP5P45974 858 aa6.98□□□□□ -1.29
VPS13D-202ENST00000460333 PDE4BQ07343 736 aa6.98□□□□□ -1.29
VPS13D-202ENST00000460333 DPY19L2Q6NUT2 758 aa6.98□□□□□ -1.29
VPS13D-202ENST00000460333 SYNE4Q8N205 404 aa6.98□□□□□ -1.29
VPS13D-202ENST00000460333 KCNB2Q92953 911 aa6.98□□□□□ -1.29
VPS13D-202ENST00000460333 IL17RAQ96F46 866 aa6.98□□□□□ -1.29
VPS13D-202ENST00000460333 ZNF274Q96GC6 653 aaPredicted RBP6.98□□□□□ -1.29
VPS13D-202ENST00000460333 PDLIM2Q96JY6 352 aa6.98□□□□□ -1.29
VPS13D-202ENST00000460333 HDAC9Q9UKV0 1011 aa6.98□□□□□ -1.29
VPS13D-202ENST00000460333 JRKLQ9Y4A0 524 aa6.98□□□□□ -1.29
VPS13D-202ENST00000460333 N4BP2Q86UW6 1770 aaPredicted RBP6.98□□□□□ -1.29
VPS13D-202ENST00000460333 COL22A1Q8NFW1 1626 aaPredicted RBP6.98□□□□□ -1.29
VPS13D-202ENST00000460333 METAP2P50579 478 aaKnown RBP eCLIP6.98□□□□□ -1.29
VPS13D-202ENST00000460333 ADCK5Q3MIX3 580 aa6.98□□□□□ -1.29
VPS13D-202ENST00000460333 FAM114A1Q8IWE2 563 aa6.98□□□□□ -1.29
VPS13D-202ENST00000460333 OGFOD1Q8N543 542 aa6.98□□□□□ -1.29
VPS13D-202ENST00000460333 FAM71BQ8TC56 605 aa6.98□□□□□ -1.29
VPS13D-202ENST00000460333 KIAA1524Q8TCG1 905 aa6.98□□□□□ -1.29
VPS13D-202ENST00000460333 TTC14Q96N46 770 aa6.98□□□□□ -1.29
VPS13D-202ENST00000460333 SLC4A9Q96Q91 983 aa6.98□□□□□ -1.29
VPS13D-202ENST00000460333 CARD6Q9BX69 1037 aa6.98□□□□□ -1.29
VPS13D-202ENST00000460333 LEMD3Q9Y2U8 911 aa6.98□□□□□ -1.29
VPS13D-202ENST00000460333 C5P01031 1676 aa6.98□□□□□ -1.29
VPS13D-202ENST00000460333 A0A087WUV0 522 aaPredicted RBP6.98□□□□□ -1.29
VPS13D-202ENST00000460333 PSDA5PKW4 1024 aaPredicted RBP6.98□□□□□ -1.29
VPS13D-202ENST00000460333 GOLGA8AA7E2F4 631 aa6.98□□□□□ -1.29
VPS13D-202ENST00000460333 ACTN2P35609 894 aa6.98□□□□□ -1.29
VPS13D-202ENST00000460333 SPATA24Q86W54 205 aa6.98□□□□□ -1.29
VPS13D-202ENST00000460333 MRFAP1L1Q96HT8 127 aa6.98□□□□□ -1.29
VPS13D-202ENST00000460333 CDK5RAP3Q96JB5 506 aa6.98□□□□□ -1.29
VPS13D-202ENST00000460333 SCLT1Q96NL6 688 aa6.98□□□□□ -1.29
VPS13D-202ENST00000460333 TACO1Q9BSH4 297 aaKnown RBP6.98□□□□□ -1.29
VPS13D-202ENST00000460333 TAOK3Q9H2K8 898 aa6.98□□□□□ -1.29
VPS13D-202ENST00000460333 TMX1Q9H3N1 280 aa6.98□□□□□ -1.29
VPS13D-202ENST00000460333 TTF2Q9UNY4 1162 aaKnown RBP6.98□□□□□ -1.29
VPS13D-202ENST00000460333 CARMIL3Q8ND23 1372 aa6.98□□□□□ -1.29
VPS13D-202ENST00000460333 RTL9Q8NET4 1388 aa6.98□□□□□ -1.29
VPS13D-202ENST00000460333 UBN2Q6ZU65 1347 aa6.98□□□□□ -1.29
VPS13D-202ENST00000460333 ARHGAP6O43182 974 aa6.98□□□□□ -1.29
VPS13D-202ENST00000460333 CYP21A2P08686 494 aa6.98□□□□□ -1.29
VPS13D-202ENST00000460333 PLCG2P16885 1265 aa6.98□□□□□ -1.29
VPS13D-202ENST00000460333 SLC8A1P32418 973 aa6.98□□□□□ -1.29
VPS13D-202ENST00000460333 CCT2P78371 535 aaKnown RBP6.98□□□□□ -1.29
VPS13D-202ENST00000460333 ME3Q16798 604 aa6.98□□□□□ -1.29
VPS13D-202ENST00000460333 CLEC17AQ6ZS10 378 aa6.98□□□□□ -1.29
VPS13D-202ENST00000460333 LMNTD2Q8IXW0 634 aa6.98□□□□□ -1.29
VPS13D-202ENST00000460333 TSC1Q92574 1164 aa6.98□□□□□ -1.29
VPS13D-202ENST00000460333 IFNKQ9P0W0 207 aa6.98□□□□□ -1.29
VPS13D-202ENST00000460333 ZNF215Q9UL58 517 aaPredicted RBP6.98□□□□□ -1.29
VPS13D-202ENST00000460333 CRYBG1Q9Y4K1 1723 aa6.98□□□□□ -1.29
VPS13D-202ENST00000460333 LTBP4Q8N2S1 1624 aa6.98□□□□□ -1.29
VPS13D-202ENST00000460333 NDUFAB1O14561 156 aa6.97□□□□□ -1.29
VPS13D-202ENST00000460333 ZBTB43O43298 467 aa6.97□□□□□ -1.29
VPS13D-202ENST00000460333 MCAMP43121 646 aa6.97□□□□□ -1.29
VPS13D-202ENST00000460333 SYKP43405 635 aa6.97□□□□□ -1.29
VPS13D-202ENST00000460333 BCAMP50895 628 aa6.97□□□□□ -1.29
VPS13D-202ENST00000460333 PPFIA1Q13136 1202 aa6.97□□□□□ -1.29
VPS13D-202ENST00000460333 IFI16Q16666 785 aaKnown RBP6.97□□□□□ -1.29
VPS13D-202ENST00000460333 C6orf163Q5TEZ5 329 aa6.97□□□□□ -1.29
VPS13D-202ENST00000460333 NLGN1Q8N2Q7 840 aa6.97□□□□□ -1.29
VPS13D-202ENST00000460333 BAG1Q99933 345 aaPredicted RBP6.97□□□□□ -1.29
VPS13D-202ENST00000460333 ORC3Q9UBD5 711 aaPredicted RBP6.97□□□□□ -1.29
VPS13D-202ENST00000460333 IQSEC3Q9UPP2 1182 aaPredicted RBP6.97□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms