RNA–Protein interactions for RNA: ENST00000417448.1

VCP-202, Transcript of valosin containing protein, humanhuman

TSL 3

Gene VCP, Length 722 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCP-202ENST00000417448 DZIP1Q86YF9 867 aaKnown RBP22.07■■□□□ 1.12
VCP-202ENST00000417448 ZNF384Q8TF68 577 aa22.07■■□□□ 1.12
VCP-202ENST00000417448 FAM163AQ96GL9 167 aaPredicted RBP22.07■■□□□ 1.12
VCP-202ENST00000417448 CDX2Q99626 313 aaPredicted RBP22.07■■□□□ 1.12
VCP-202ENST00000417448 NUDT12Q9BQG2 462 aa22.07■■□□□ 1.12
VCP-202ENST00000417448 ZBTB40Q9NUA8 1239 aa22.07■■□□□ 1.12
VCP-202ENST00000417448 MROH7-TTC4A0A0A0MT08 1334 aa22.06■■□□□ 1.12
VCP-202ENST00000417448 ZNF697Q5TEC3 545 aa22.06■■□□□ 1.12
VCP-202ENST00000417448 SOCS4Q8WXH5 440 aa22.06■■□□□ 1.12
VCP-202ENST00000417448 USP6NLQ92738 828 aa22.06■■□□□ 1.12
VCP-202ENST00000417448 CRBNQ96SW2 442 aa22.06■■□□□ 1.12
VCP-202ENST00000417448 ZKSCAN1P17029 563 aaPredicted RBP22.05■■□□□ 1.12
VCP-202ENST00000417448 RASGRF1Q13972 1273 aa22.05■■□□□ 1.12
VCP-202ENST00000417448 CEP85Q6P2H3 762 aa22.05■■□□□ 1.12
VCP-202ENST00000417448 ZGPATQ8N5A5 531 aaKnown RBP22.05■■□□□ 1.12
VCP-202ENST00000417448 P2RX7Q99572 595 aaKnown RBP22.05■■□□□ 1.12
VCP-202ENST00000417448 COPRSQ9NQ92 184 aa22.05■■□□□ 1.12
VCP-202ENST00000417448 ABCF2Q9UG63 623 aa22.05■■□□□ 1.12
VCP-202ENST00000417448 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP22.05■■□□□ 1.12
VCP-202ENST00000417448 ZBTB22O15209 634 aa22.04■■□□□ 1.12
VCP-202ENST00000417448 CAP2P40123 477 aa22.04■■□□□ 1.12
VCP-202ENST00000417448 POLA2Q14181 598 aa22.04■■□□□ 1.12
VCP-202ENST00000417448 CCDC102BQ68D86 513 aa22.04■■□□□ 1.12
VCP-202ENST00000417448 MAFAQ8NHW3 353 aaPredicted RBP22.04■■□□□ 1.12
VCP-202ENST00000417448 TBC1D2Q9BYX2 928 aa22.04■■□□□ 1.12
VCP-202ENST00000417448 GPR75-ASB3A0A0A6YYF3 556 aa22.03■■□□□ 1.12
VCP-202ENST00000417448 USP17L5A8MUK1 530 aa22.03■■□□□ 1.12
VCP-202ENST00000417448 CIAO1O76071 339 aa22.03■■□□□ 1.12
VCP-202ENST00000417448 MTMR2Q13614 643 aa22.03■■□□□ 1.12
VCP-202ENST00000417448 PORCNQ9H237 461 aa22.03■■□□□ 1.12
VCP-202ENST00000417448 CEP126Q9P2H0 1117 aa22.03■■□□□ 1.12
VCP-202ENST00000417448 RLFQ13129 1914 aa22.02■■□□□ 1.12
VCP-202ENST00000417448 NPM3O75607 178 aaKnown RBP22.02■■□□□ 1.12
VCP-202ENST00000417448 HERVK_113P62684 666 aa22.02■■□□□ 1.12
VCP-202ENST00000417448 IRX3P78415 501 aaPredicted RBP22.02■■□□□ 1.12
VCP-202ENST00000417448 MECOMQ03112 1051 aa22.02■■□□□ 1.12
VCP-202ENST00000417448 Q3C1V9 767 aa22.02■■□□□ 1.12
VCP-202ENST00000417448 MORN1Q5T089 497 aa22.02■■□□□ 1.12
VCP-202ENST00000417448 POTEEQ6S8J3 1075 aa22.02■■□□□ 1.12
VCP-202ENST00000417448 GPRC5AQ8NFJ5 357 aa22.02■■□□□ 1.12
VCP-202ENST00000417448 SSH3Q8TE77 659 aa22.02■■□□□ 1.12
VCP-202ENST00000417448 LBHD1Q9BQE6 289 aaPredicted RBP22.02■■□□□ 1.12
VCP-202ENST00000417448 RBPJLQ9UBG7 517 aa22.02■■□□□ 1.12
VCP-202ENST00000417448 HOXA7P31268 230 aaPredicted RBP22.01■■□□□ 1.11
VCP-202ENST00000417448 IRX6P78412 446 aaPredicted RBP22.01■■□□□ 1.11
VCP-202ENST00000417448 JAG1P78504 1218 aa22.01■■□□□ 1.11
VCP-202ENST00000417448 TFCP2Q12800 502 aa22.01■■□□□ 1.11
VCP-202ENST00000417448 GPR142Q7Z601 462 aa22.01■■□□□ 1.11
VCP-202ENST00000417448 SLF2Q8IX21 1173 aa22.01■■□□□ 1.11
VCP-202ENST00000417448 SIRT2Q8IXJ6 389 aa22.01■■□□□ 1.11
VCP-202ENST00000417448 TRMT44Q8IYL2 757 aaKnown RBP22.01■■□□□ 1.11
VCP-202ENST00000417448 SENP6Q9GZR1 1112 aaPredicted RBP22.01■■□□□ 1.11
VCP-202ENST00000417448 SEMA6BQ9H3T3 888 aa22.01■■□□□ 1.11
VCP-202ENST00000417448 PDS5AQ29RF7 1337 aaKnown RBP22.01■■□□□ 1.11
VCP-202ENST00000417448 CDK5RAP2Q96SN8 1893 aa22■■□□□ 1.11
VCP-202ENST00000417448 FBXO3Q9UK99 471 aa22■■□□□ 1.11
VCP-202ENST00000417448 SURF6O75683 361 aaKnown RBP21.99■■□□□ 1.11
VCP-202ENST00000417448 MAPK4P31152 587 aa21.99■■□□□ 1.11
VCP-202ENST00000417448 IL15P40933 162 aaPredicted RBP21.99■■□□□ 1.11
VCP-202ENST00000417448 RGS2P41220 211 aa21.99■■□□□ 1.11
VCP-202ENST00000417448 ATN1P54259 1190 aaPredicted RBP21.99■■□□□ 1.11
VCP-202ENST00000417448 BACE1P56817 501 aa21.99■■□□□ 1.11
VCP-202ENST00000417448 ERVK-9P63128 1117 aa21.99■■□□□ 1.11
VCP-202ENST00000417448 ERVK-24P63145 666 aa21.99■■□□□ 1.11
VCP-202ENST00000417448 G3BP1Q13283 466 aaKnown RBP eCLIP21.99■■□□□ 1.114e-7■■■□□ 17.2
VCP-202ENST00000417448 SHHQ15465 462 aa21.99■■□□□ 1.11
VCP-202ENST00000417448 SHROOM1Q2M3G4 852 aaPredicted RBP21.99■■□□□ 1.11
VCP-202ENST00000417448 MYLIPQ8WY64 445 aa21.99■■□□□ 1.11
VCP-202ENST00000417448 APBA2Q99767 749 aa21.99■■□□□ 1.11
VCP-202ENST00000417448 WDR18Q9BV38 432 aa21.99■■□□□ 1.11
VCP-202ENST00000417448 TTYH1Q9H313 450 aaPredicted RBP21.99■■□□□ 1.11
VCP-202ENST00000417448 AS3MTQ9HBK9 375 aa21.99■■□□□ 1.11
VCP-202ENST00000417448 C9orf50Q5SZB4 431 aa21.98■■□□□ 1.11
VCP-202ENST00000417448 FLRT1Q9NZU1 646 aa21.98■■□□□ 1.11
VCP-202ENST00000417448 TIMM10P62072 90 aa21.97■■□□□ 1.11
VCP-202ENST00000417448 OS9Q13438 667 aaPredicted RBP21.97■■□□□ 1.11
VCP-202ENST00000417448 SPTY2D1Q68D10 685 aaPredicted RBP21.97■■□□□ 1.11
VCP-202ENST00000417448 BCL11AQ9H165 835 aa21.97■■□□□ 1.11
VCP-202ENST00000417448 EXOC6BQ9Y2D4 811 aa21.97■■□□□ 1.11
VCP-202ENST00000417448 FOCADQ5VW36 1801 aa21.96■■□□□ 1.11
VCP-202ENST00000417448 APBB1O00213 710 aa21.96■■□□□ 1.11
VCP-202ENST00000417448 ERICH6Q7L0X2 663 aa21.96■■□□□ 1.11
VCP-202ENST00000417448 PLEKHH3Q7Z736 793 aa21.96■■□□□ 1.11
VCP-202ENST00000417448 PAGR1Q9BTK6 254 aa21.96■■□□□ 1.11
VCP-202ENST00000417448 TMOD4Q9NZQ9 345 aa21.96■■□□□ 1.11
VCP-202ENST00000417448 RTP1P59025 263 aa21.95■■□□□ 1.1
VCP-202ENST00000417448 NSUN4Q96CB9 384 aaKnown RBP21.95■■□□□ 1.1
VCP-202ENST00000417448 DNAJC18Q9H819 358 aa21.95■■□□□ 1.1
VCP-202ENST00000417448 HERC5Q9UII4 1024 aaKnown RBP21.95■■□□□ 1.1
VCP-202ENST00000417448 MAP2K5Q13163 448 aa21.94■■□□□ 1.1
VCP-202ENST00000417448 PI16Q6UXB8 463 aa21.94■■□□□ 1.1
VCP-202ENST00000417448 RPAP2Q8IXW5 612 aaPredicted RBP21.94■■□□□ 1.1
VCP-202ENST00000417448 EXOC6Q8TAG9 804 aa21.94■■□□□ 1.1
VCP-202ENST00000417448 DDX20Q9UHI6 824 aaKnown RBP21.94■■□□□ 1.1
VCP-202ENST00000417448 PCDHB15Q9Y5E8 787 aa21.94■■□□□ 1.1
VCP-202ENST00000417448 NDUFB9Q9Y6M9 179 aa21.94■■□□□ 1.1
VCP-202ENST00000417448 ASNSP08243 561 aa21.93■■□□□ 1.1
VCP-202ENST00000417448 TBC1D9Q6ZT07 1266 aa21.93■■□□□ 1.1
VCP-202ENST00000417448 CCAR1Q8IX12 1150 aaKnown RBP21.93■■□□□ 1.1
VCP-202ENST00000417448 LPAR1Q92633 364 aa21.93■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms