RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 POSTNQ15063 836 aa11.34□□□□□ -0.59
SS18-203ENST00000415083 C3orf67Q6ZVT6 689 aa11.34□□□□□ -0.59
SS18-203ENST00000415083 SLAIN2Q9P270 581 aa11.34□□□□□ -0.59
SS18-203ENST00000415083 PPP2R2CQ9Y2T4 447 aa11.34□□□□□ -0.59
SS18-203ENST00000415083 BAZ2BQ9UIF8 2168 aaKnown RBP11.33□□□□□ -0.6
SS18-203ENST00000415083 ROBO1Q9Y6N7 1651 aa11.33□□□□□ -0.6
SS18-203ENST00000415083 CYP2D7A0A087X1C5 515 aa11.33□□□□□ -0.6
SS18-203ENST00000415083 SSRP1Q08945 709 aaKnown RBP11.33□□□□□ -0.6
SS18-203ENST00000415083 NR1I3Q14994 352 aa11.33□□□□□ -0.6
SS18-203ENST00000415083 CFAP100Q494V2 611 aa11.33□□□□□ -0.6
SS18-203ENST00000415083 ZNF771Q7L3S4 317 aaPredicted RBP11.33□□□□□ -0.6
SS18-203ENST00000415083 SDR42E1Q8WUS8 393 aa11.33□□□□□ -0.6
SS18-203ENST00000415083 CHMP4CQ96CF2 233 aa11.33□□□□□ -0.6
SS18-203ENST00000415083 EPSTI1Q96J88 318 aa11.33□□□□□ -0.6
SS18-203ENST00000415083 UBXN6Q9BZV1 441 aa11.33□□□□□ -0.6
SS18-203ENST00000415083 RNF225M0QZC1 329 aaPredicted RBP11.33□□□□□ -0.6
SS18-203ENST00000415083 COBLO75128 1261 aa11.33□□□□□ -0.6
SS18-203ENST00000415083 SEC31AO94979 1220 aaKnown RBP11.33□□□□□ -0.6
SS18-203ENST00000415083 SERPINC1P01008 464 aa11.33□□□□□ -0.6
SS18-203ENST00000415083 TFRCP02786 760 aaKnown RBP11.33□□□□□ -0.6
SS18-203ENST00000415083 PBX1P40424 430 aa11.33□□□□□ -0.6
SS18-203ENST00000415083 NFXL1Q6ZNB6 911 aa11.33□□□□□ -0.6
SS18-203ENST00000415083 SH3RF1Q7Z6J0 888 aa11.33□□□□□ -0.6
SS18-203ENST00000415083 TNFRSF25Q93038 417 aa11.33□□□□□ -0.6
SS18-203ENST00000415083 NFE2L3Q9Y4A8 694 aa11.33□□□□□ -0.6
SS18-203ENST00000415083 SLC12A7Q9Y666 1083 aa11.33□□□□□ -0.6
SS18-203ENST00000415083 PRDM1O75626 825 aa11.32□□□□□ -0.6
SS18-203ENST00000415083 MTRQ99707 1265 aa11.32□□□□□ -0.6
SS18-203ENST00000415083 DESI2Q9BSY9 194 aa11.32□□□□□ -0.6
SS18-203ENST00000415083 PNPLA7Q6ZV29 1317 aa11.32□□□□□ -0.6
SS18-203ENST00000415083 CDKL5O76039 1030 aa11.32□□□□□ -0.6
SS18-203ENST00000415083 STARD3NLO95772 234 aa11.32□□□□□ -0.6
SS18-203ENST00000415083 CUL4BQ13620 913 aa11.32□□□□□ -0.6
SS18-203ENST00000415083 IL17AQ16552 155 aa11.32□□□□□ -0.6
SS18-203ENST00000415083 ARHGAP29Q52LW3 1261 aa11.32□□□□□ -0.6
SS18-203ENST00000415083 DZIP3Q86Y13 1208 aaKnown RBP11.32□□□□□ -0.6
SS18-203ENST00000415083 PDILTQ8N807 584 aa11.32□□□□□ -0.6
SS18-203ENST00000415083 CARD6Q9BX69 1037 aa11.32□□□□□ -0.6
SS18-203ENST00000415083 NAPBQ9H115 298 aa11.32□□□□□ -0.6
SS18-203ENST00000415083 SRPRBQ9Y5M8 271 aaKnown RBP11.32□□□□□ -0.6
SS18-203ENST00000415083 KIAA1551Q9HCM1 1747 aa11.32□□□□□ -0.6
SS18-203ENST00000415083 MROH5Q6ZUA9 1318 aa11.32□□□□□ -0.6
SS18-203ENST00000415083 PNMA6AP0CW24 399 aaPredicted RBP11.32□□□□□ -0.6
SS18-203ENST00000415083 GABPB1Q06547 395 aaPredicted RBP11.32□□□□□ -0.6
SS18-203ENST00000415083 SMYD4Q8IYR2 804 aaPredicted RBP11.32□□□□□ -0.6
SS18-203ENST00000415083 FOXP1Q9H334 677 aaPredicted RBP11.32□□□□□ -0.6
SS18-203ENST00000415083 IQSEC3Q9UPP2 1182 aaPredicted RBP11.32□□□□□ -0.6
SS18-203ENST00000415083 KIF20AO95235 890 aa11.31□□□□□ -0.6
SS18-203ENST00000415083 PLEKHA8P1O95397 391 aa11.31□□□□□ -0.6
SS18-203ENST00000415083 EIF5P55010 431 aaKnown RBP11.31□□□□□ -0.6
SS18-203ENST00000415083 MAP3K9P80192 1104 aa11.31□□□□□ -0.6
SS18-203ENST00000415083 RRP12Q5JTH9 1297 aaKnown RBP11.31□□□□□ -0.6
SS18-203ENST00000415083 RAD9BQ6WBX8 426 aa11.31□□□□□ -0.6
SS18-203ENST00000415083 KRT222Q8N1A0 295 aa11.31□□□□□ -0.6
SS18-203ENST00000415083 KIF2AO00139 706 aaPredicted RBP11.31□□□□□ -0.6
SS18-203ENST00000415083 UQCRFS1P1P0C7P4 283 aa11.31□□□□□ -0.6
SS18-203ENST00000415083 SLC51AQ86UW1 340 aa11.31□□□□□ -0.6
SS18-203ENST00000415083 ZNF654Q8IZM8 581 aa11.31□□□□□ -0.6
SS18-203ENST00000415083 FANCBQ8NB91 859 aa11.31□□□□□ -0.6
SS18-203ENST00000415083 ENOX1Q8TC92 643 aaKnown RBP11.31□□□□□ -0.6
SS18-203ENST00000415083 RIOK1Q9BRS2 568 aaKnown RBP11.31□□□□□ -0.6
SS18-203ENST00000415083 CABP5Q9NP86 173 aa11.31□□□□□ -0.6
SS18-203ENST00000415083 BTG4Q9NY30 223 aa11.31□□□□□ -0.6
SS18-203ENST00000415083 SLC4A4Q9Y6R1 1079 aa11.31□□□□□ -0.6
SS18-203ENST00000415083 ZNF335Q9H4Z2 1342 aaPredicted RBP11.31□□□□□ -0.6
SS18-203ENST00000415083 LAMB1P07942 1786 aa11.31□□□□□ -0.6
SS18-203ENST00000415083 A0A1B0GTH6 734 aa11.31□□□□□ -0.6
SS18-203ENST00000415083 SOWAHDA6NJG2 315 aa11.31□□□□□ -0.6
SS18-203ENST00000415083 ERVV-1B6SEH8 477 aa11.31□□□□□ -0.6
SS18-203ENST00000415083 TOP1P11387 765 aaKnown RBP11.31□□□□□ -0.6
SS18-203ENST00000415083 RTN1Q16799 776 aa11.31□□□□□ -0.6
SS18-203ENST00000415083 RSRC2Q7L4I2 434 aaKnown RBP11.31□□□□□ -0.6
SS18-203ENST00000415083 VPS54Q9P1Q0 977 aa11.31□□□□□ -0.6
SS18-203ENST00000415083 PPP1R3GB7ZBB8 358 aa11.3□□□□□ -0.6
SS18-203ENST00000415083 MFSD6Q6ZSS7 791 aa11.3□□□□□ -0.6
SS18-203ENST00000415083 FAM177A1Q8N128 213 aaPredicted RBP11.3□□□□□ -0.6
SS18-203ENST00000415083 ENAHQ8N8S7 591 aaPredicted RBP11.3□□□□□ -0.6
SS18-203ENST00000415083 ZNF579Q8NAF0 562 aaKnown RBP11.3□□□□□ -0.6
SS18-203ENST00000415083 PHF20Q9BVI0 1012 aa11.3□□□□□ -0.6
SS18-203ENST00000415083 PODXL2Q9NZ53 605 aa11.3□□□□□ -0.6
SS18-203ENST00000415083 MRFAP1Q9Y605 127 aa11.3□□□□□ -0.6
SS18-203ENST00000415083 COL5A3P25940 1745 aaPredicted RBP11.29□□□□□ -0.6
SS18-203ENST00000415083 CAMTA2O94983 1202 aa11.29□□□□□ -0.6
SS18-203ENST00000415083 NTSR2O95665 410 aa11.29□□□□□ -0.6
SS18-203ENST00000415083 TBC1D8O95759 1140 aa11.29□□□□□ -0.6
SS18-203ENST00000415083 EVA1CP58658 441 aa11.29□□□□□ -0.6
SS18-203ENST00000415083 DYNLL1P63167 89 aaKnown RBP11.29□□□□□ -0.6
SS18-203ENST00000415083 PPARAQ07869 468 aa11.29□□□□□ -0.6
SS18-203ENST00000415083 WTAPQ15007 396 aa11.29□□□□□ -0.6
SS18-203ENST00000415083 CDKAL1Q5VV42 579 aa11.29□□□□□ -0.6
SS18-203ENST00000415083 JMYQ8N9B5 988 aa11.29□□□□□ -0.6
SS18-203ENST00000415083 BAG1Q99933 345 aaPredicted RBP11.29□□□□□ -0.6
SS18-203ENST00000415083 ATP2B1P20020 1258 aa11.29□□□□□ -0.6
SS18-203ENST00000415083 IL6STP40189 918 aaPredicted RBP11.29□□□□□ -0.6
SS18-203ENST00000415083 ITPK1Q13572 414 aa11.29□□□□□ -0.6
SS18-203ENST00000415083 ZNF804BA4D1E1 1349 aa11.29□□□□□ -0.6
SS18-203ENST00000415083 TNKSO95271 1327 aa11.29□□□□□ -0.6
SS18-203ENST00000415083 XDHP47989 1333 aa11.29□□□□□ -0.6
SS18-203ENST00000415083 ARHGAP6O43182 974 aa11.29□□□□□ -0.6
SS18-203ENST00000415083 NMT2O60551 498 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms