RNA–Protein interactions for RNA: ENST00000315544.6

CNOT4-201, Transcript of CCR4-NOT transcription complex subunit 4, humanhuman

TSL 1 (best) BASIC

Gene CNOT4, Length 3,783 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT4-201ENST00000315544 RTCBQ9Y3I0 505 aaKnown RBP9.15□□□□□ -0.94
CNOT4-201ENST00000315544 MYO1BO43795 1136 aa9.15□□□□□ -0.94
CNOT4-201ENST00000315544 MMP1P03956 469 aa9.15□□□□□ -0.94
CNOT4-201ENST00000315544 PRR29P0C7W0 189 aa9.15□□□□□ -0.94
CNOT4-201ENST00000315544 LONRF3Q496Y0 759 aa9.15□□□□□ -0.94
CNOT4-201ENST00000315544 TRAPPC3LQ5T215 181 aa9.15□□□□□ -0.94
CNOT4-201ENST00000315544 ZSWIM5Q9P217 1185 aa9.15□□□□□ -0.94
CNOT4-201ENST00000315544 PASKQ96RG2 1323 aa9.15□□□□□ -0.94
CNOT4-201ENST00000315544 NFKBIEO00221 500 aa9.15□□□□□ -0.95
CNOT4-201ENST00000315544 PHF14O94880 888 aa9.15□□□□□ -0.95
CNOT4-201ENST00000315544 ATP1A3P13637 1013 aa9.15□□□□□ -0.95
CNOT4-201ENST00000315544 NUP62CLQ9H1M0 184 aa9.15□□□□□ -0.95
CNOT4-201ENST00000315544 ITIH6Q6UXX5 1313 aa9.15□□□□□ -0.95
CNOT4-201ENST00000315544 FZD9O00144 591 aa9.14□□□□□ -0.95
CNOT4-201ENST00000315544 TEFQ10587 303 aa9.14□□□□□ -0.95
CNOT4-201ENST00000315544 FBXO38Q6PIJ6 1188 aa9.14□□□□□ -0.95
CNOT4-201ENST00000315544 MAP7D2Q96T17 732 aa9.14□□□□□ -0.95
CNOT4-201ENST00000315544 TMEM232C9JQI7 657 aa9.14□□□□□ -0.95
CNOT4-201ENST00000315544 FIBPO43427 364 aa9.14□□□□□ -0.95
CNOT4-201ENST00000315544 CCDC192P0DO97 292 aa9.14□□□□□ -0.95
CNOT4-201ENST00000315544 PARP10Q53GL7 1025 aa9.14□□□□□ -0.95
CNOT4-201ENST00000315544 TMED8Q6PL24 325 aaPredicted RBP9.14□□□□□ -0.95
CNOT4-201ENST00000315544 CCDC186Q7Z3E2 898 aa9.14□□□□□ -0.95
CNOT4-201ENST00000315544 FCHSD1Q86WN1 690 aa9.14□□□□□ -0.95
CNOT4-201ENST00000315544 TFIP11Q9UBB9 837 aaKnown RBP9.14□□□□□ -0.95
CNOT4-201ENST00000315544 POLR2AP24928 1970 aaKnown RBP9.14□□□□□ -0.95
CNOT4-201ENST00000315544 IGKV6D-41A0A0C4DH26 115 aa9.14□□□□□ -0.95
CNOT4-201ENST00000315544 TBC1D8O95759 1140 aa9.14□□□□□ -0.95
CNOT4-201ENST00000315544 FKBP1AP62942 108 aaKnown RBP9.14□□□□□ -0.95
CNOT4-201ENST00000315544 R3HCC1Q9Y3T6 440 aaKnown RBP9.14□□□□□ -0.95
CNOT4-201ENST00000315544 PDCD11Q14690 1871 aaKnown RBP9.13□□□□□ -0.95
CNOT4-201ENST00000315544 GPAA1O43292 621 aa9.13□□□□□ -0.95
CNOT4-201ENST00000315544 PDCP20941 246 aa9.13□□□□□ -0.95
CNOT4-201ENST00000315544 EMC10Q5UCC4 262 aa9.13□□□□□ -0.95
CNOT4-201ENST00000315544 USP49Q70CQ1 688 aa9.13□□□□□ -0.95
CNOT4-201ENST00000315544 FBXO33Q7Z6M2 555 aa9.13□□□□□ -0.95
CNOT4-201ENST00000315544 CASP8AP2Q9UKL3 1982 aa9.13□□□□□ -0.95
CNOT4-201ENST00000315544 CTAGE5O15320 804 aa9.13□□□□□ -0.95
CNOT4-201ENST00000315544 SOX12O15370 315 aa9.13□□□□□ -0.95
CNOT4-201ENST00000315544 ZFYP08048 801 aaPredicted RBP9.13□□□□□ -0.95
CNOT4-201ENST00000315544 MYL6BP14649 208 aa9.13□□□□□ -0.95
CNOT4-201ENST00000315544 PHKA1P46020 1223 aa9.13□□□□□ -0.95
CNOT4-201ENST00000315544 CT47A1Q5JQC4 288 aaPredicted RBP9.13□□□□□ -0.95
CNOT4-201ENST00000315544 CCDC102BQ68D86 513 aa9.13□□□□□ -0.95
CNOT4-201ENST00000315544 TYW1BQ6NUM6 668 aa9.13□□□□□ -0.95
CNOT4-201ENST00000315544 WDR59Q6PJI9 974 aa9.13□□□□□ -0.95
CNOT4-201ENST00000315544 LRRC2Q9BYS8 371 aa9.13□□□□□ -0.95
CNOT4-201ENST00000315544 ANKZF1Q9H8Y5 726 aa9.13□□□□□ -0.95
CNOT4-201ENST00000315544 SRP68Q9UHB9 627 aaKnown RBP9.13□□□□□ -0.95
CNOT4-201ENST00000315544 CCDC9Q9Y3X0 531 aaKnown RBP9.13□□□□□ -0.95
CNOT4-201ENST00000315544 PDE6AP16499 860 aa9.13□□□□□ -0.95
CNOT4-201ENST00000315544 MMP14P50281 582 aa9.13□□□□□ -0.95
CNOT4-201ENST00000315544 ASTE1Q2TB18 679 aaPredicted RBP9.13□□□□□ -0.95
CNOT4-201ENST00000315544 SUSD4Q5VX71 490 aa9.13□□□□□ -0.95
CNOT4-201ENST00000315544 CEP135Q66GS9 1140 aa9.13□□□□□ -0.95
CNOT4-201ENST00000315544 IL17RBQ9NRM6 502 aa9.13□□□□□ -0.95
CNOT4-201ENST00000315544 GNPATO15228 680 aa9.12□□□□□ -0.95
CNOT4-201ENST00000315544 STARD3NLO95772 234 aa9.12□□□□□ -0.95
CNOT4-201ENST00000315544 DDX58O95786 925 aaKnown RBP9.12□□□□□ -0.95
CNOT4-201ENST00000315544 FOXR2Q6PJQ5 311 aa9.12□□□□□ -0.95
CNOT4-201ENST00000315544 MSANTD4Q8NCY6 345 aa9.12□□□□□ -0.95
CNOT4-201ENST00000315544 SIL1Q9H173 461 aa9.12□□□□□ -0.95
CNOT4-201ENST00000315544 DIAPH3Q9NSV4 1193 aa9.12□□□□□ -0.95
CNOT4-201ENST00000315544 DAXXQ9UER7 740 aaPredicted RBP9.12□□□□□ -0.95
CNOT4-201ENST00000315544 ADD3Q9UEY8 706 aaKnown RBP9.12□□□□□ -0.95
CNOT4-201ENST00000315544 GOLGA6L22H0YM25 854 aa9.12□□□□□ -0.95
CNOT4-201ENST00000315544 MEA1Q16626 185 aa9.12□□□□□ -0.95
CNOT4-201ENST00000315544 CRACR2BQ8N4Y2 399 aaPredicted RBP9.12□□□□□ -0.95
CNOT4-201ENST00000315544 FOXP1Q9H334 677 aaPredicted RBP9.12□□□□□ -0.95
CNOT4-201ENST00000315544 MRFAP1Q9Y605 127 aa9.12□□□□□ -0.95
CNOT4-201ENST00000315544 ZNF202O95125 648 aa9.12□□□□□ -0.95
CNOT4-201ENST00000315544 TPM3P06753 285 aa9.12□□□□□ -0.95
CNOT4-201ENST00000315544 TMC4Q7Z404 712 aa9.12□□□□□ -0.95
CNOT4-201ENST00000315544 IQUBQ8NA54 791 aa9.12□□□□□ -0.95
CNOT4-201ENST00000315544 SRPRBQ9Y5M8 271 aaKnown RBP9.12□□□□□ -0.95
CNOT4-201ENST00000315544 GOLIM4O00461 696 aa9.11□□□□□ -0.95
CNOT4-201ENST00000315544 RPS6KA5O75582 802 aa9.11□□□□□ -0.95
CNOT4-201ENST00000315544 STX1AQ16623 288 aa9.11□□□□□ -0.95
CNOT4-201ENST00000315544 ANO1Q5XXA6 986 aa9.11□□□□□ -0.95
CNOT4-201ENST00000315544 ZSCAN29Q8IWY8 852 aaPredicted RBP9.11□□□□□ -0.95
CNOT4-201ENST00000315544 CCAR1Q8IX12 1150 aaKnown RBP9.11□□□□□ -0.95
CNOT4-201ENST00000315544 SPATA32Q96LK8 384 aa9.11□□□□□ -0.95
CNOT4-201ENST00000315544 C9orf78Q9NZ63 289 aaPredicted RBP9.11□□□□□ -0.95
CNOT4-201ENST00000315544 CLK2P49760 499 aaKnown RBP9.11□□□□□ -0.95
CNOT4-201ENST00000315544 FOXD4L5Q5VV16 416 aaPredicted RBP9.11□□□□□ -0.95
CNOT4-201ENST00000315544 FERMT3Q86UX7 667 aa9.11□□□□□ -0.95
CNOT4-201ENST00000315544 CKAP2LQ8IYA6 745 aa9.11□□□□□ -0.95
CNOT4-201ENST00000315544 DAGLBQ8NCG7 672 aa9.11□□□□□ -0.95
CNOT4-201ENST00000315544 OXER1Q8TDS5 423 aa9.11□□□□□ -0.95
CNOT4-201ENST00000315544 FOXD4L4Q8WXT5 416 aaPredicted RBP9.11□□□□□ -0.95
CNOT4-201ENST00000315544 ERCC4Q92889 916 aaPredicted RBP9.11□□□□□ -0.95
CNOT4-201ENST00000315544 FEZ1Q99689 392 aa9.11□□□□□ -0.95
CNOT4-201ENST00000315544 XPO4Q9C0E2 1151 aaKnown RBP9.11□□□□□ -0.95
CNOT4-201ENST00000315544 ATP6V1DQ9Y5K8 247 aa9.11□□□□□ -0.95
CNOT4-201ENST00000315544 TANC1Q9C0D5 1861 aa9.11□□□□□ -0.95
CNOT4-201ENST00000315544 FAM177BA6PVY3 158 aa9.11□□□□□ -0.95
CNOT4-201ENST00000315544 IGSF3O75054 1194 aa9.11□□□□□ -0.95
CNOT4-201ENST00000315544 ZNF165P49910 485 aa9.11□□□□□ -0.95
CNOT4-201ENST00000315544 KCNQ4P56696 695 aa9.11□□□□□ -0.95
CNOT4-201ENST00000315544 MTERF4Q7Z6M4 381 aaKnown RBP9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 111.2 ms