RNA–Protein interactions for RNA: ENST00000011700.10

VPS13D-201, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 10,969 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-201ENST00000011700 PUF60Q9UHX1 559 aaKnown RBP6.72□□□□□ -1.33
VPS13D-201ENST00000011700 SART1O43290 800 aaKnown RBP6.72□□□□□ -1.33
VPS13D-201ENST00000011700 KDM4AO75164 1064 aa6.72□□□□□ -1.33
VPS13D-201ENST00000011700 PYGLP06737 847 aa6.72□□□□□ -1.33
VPS13D-201ENST00000011700 CABS1Q96KC9 395 aa6.72□□□□□ -1.33
VPS13D-201ENST00000011700 MID2Q9UJV3 735 aa6.72□□□□□ -1.33
VPS13D-201ENST00000011700 ATP10DQ9P241 1426 aa6.72□□□□□ -1.33
VPS13D-201ENST00000011700 RIOK3O14730 519 aaKnown RBP6.72□□□□□ -1.33
VPS13D-201ENST00000011700 EIF3BP55884 814 aaKnown RBP6.72□□□□□ -1.33
VPS13D-201ENST00000011700 ANKRD20A4Q4UJ75 823 aa6.72□□□□□ -1.33
VPS13D-201ENST00000011700 ANKRD20A8PQ5CZ79 823 aa6.72□□□□□ -1.33
VPS13D-201ENST00000011700 ANKRD20A2Q5SQ80 823 aa6.72□□□□□ -1.33
VPS13D-201ENST00000011700 ANKRD20A1Q5TYW2 823 aa6.72□□□□□ -1.33
VPS13D-201ENST00000011700 KRT39Q6A163 491 aa6.72□□□□□ -1.33
VPS13D-201ENST00000011700 PAWRQ96IZ0 340 aaKnown RBP6.72□□□□□ -1.33
VPS13D-201ENST00000011700 CARD10Q9BWT7 1032 aa6.72□□□□□ -1.33
VPS13D-201ENST00000011700 CTTNBP2NLQ9P2B4 639 aa6.72□□□□□ -1.33
VPS13D-201ENST00000011700 PPARGP37231 505 aaPredicted RBP6.72□□□□□ -1.33
VPS13D-201ENST00000011700 ATP6V1AP38606 617 aa6.72□□□□□ -1.33
VPS13D-201ENST00000011700 EFCAB13Q8IY85 973 aa6.72□□□□□ -1.33
VPS13D-201ENST00000011700 EYA3Q99504 573 aa6.72□□□□□ -1.33
VPS13D-201ENST00000011700 ICE1Q9Y2F5 2266 aa6.72□□□□□ -1.33
VPS13D-201ENST00000011700 ALG1Q9BT22 464 aa6.72□□□□□ -1.33
VPS13D-201ENST00000011700 TRIM27P14373 513 aa6.72□□□□□ -1.33
VPS13D-201ENST00000011700 NBPF14Q5TI25 921 aa6.72□□□□□ -1.33
VPS13D-201ENST00000011700 RBSNQ9H1K0 784 aa6.72□□□□□ -1.33
VPS13D-201ENST00000011700 CABP1Q9NZU7 370 aa6.72□□□□□ -1.33
VPS13D-201ENST00000011700 BPIFB4P59827 614 aa6.72□□□□□ -1.33
VPS13D-201ENST00000011700 UTP14CQ5TAP6 766 aaKnown RBP6.72□□□□□ -1.33
VPS13D-201ENST00000011700 FBXO41Q8TF61 875 aa6.72□□□□□ -1.33
VPS13D-201ENST00000011700 SSH1Q8WYL5 1049 aa6.72□□□□□ -1.33
VPS13D-201ENST00000011700 GOLGA8IPA6NC78 632 aa6.71□□□□□ -1.33
VPS13D-201ENST00000011700 MICU3Q86XE3 530 aa6.71□□□□□ -1.33
VPS13D-201ENST00000011700 IFNL2Q8IZJ0 200 aa6.71□□□□□ -1.33
VPS13D-201ENST00000011700 CDKL2Q92772 493 aa6.71□□□□□ -1.33
VPS13D-201ENST00000011700 GRIN2AQ12879 1464 aa6.71□□□□□ -1.33
VPS13D-201ENST00000011700 EFCAB8A8MWE9 144 aa6.71□□□□□ -1.33
VPS13D-201ENST00000011700 GRM8O00222 908 aa6.71□□□□□ -1.33
VPS13D-201ENST00000011700 SRGAP2BP0DMP2 458 aa6.71□□□□□ -1.33
VPS13D-201ENST00000011700 NBPF10Q6P3W6 841 aaKnown RBP6.71□□□□□ -1.33
VPS13D-201ENST00000011700 CENPKQ9BS16 269 aa6.71□□□□□ -1.33
VPS13D-201ENST00000011700 ARHGEF10LQ9HCE6 1279 aa6.71□□□□□ -1.33
VPS13D-201ENST00000011700 RIC8AQ9NPQ8 531 aa6.71□□□□□ -1.33
VPS13D-201ENST00000011700 HNRNPCL1O60812 293 aaKnown RBP6.71□□□□□ -1.33
VPS13D-201ENST00000011700 HSPA1LP34931 641 aa6.71□□□□□ -1.33
VPS13D-201ENST00000011700 FAM71BQ8TC56 605 aa6.71□□□□□ -1.33
VPS13D-201ENST00000011700 FNBP1Q96RU3 617 aa6.71□□□□□ -1.33
VPS13D-201ENST00000011700 TRIM15Q9C019 465 aa6.71□□□□□ -1.33
VPS13D-201ENST00000011700 TXLNGQ9NUQ3 528 aa6.71□□□□□ -1.33
VPS13D-201ENST00000011700 STX8Q9UNK0 236 aa6.71□□□□□ -1.33
VPS13D-201ENST00000011700 ADRA2BP18089 450 aa6.71□□□□□ -1.34
VPS13D-201ENST00000011700 MYRIPQ8NFW9 859 aa6.71□□□□□ -1.34
VPS13D-201ENST00000011700 SYNRGQ9UMZ2 1314 aa6.71□□□□□ -1.34
VPS13D-201ENST00000011700 HNRNPRO43390 633 aaKnown RBP6.71□□□□□ -1.34
VPS13D-201ENST00000011700 PIP4K2CQ8TBX8 421 aa6.71□□□□□ -1.34
VPS13D-201ENST00000011700 SERPINI1Q99574 410 aa6.71□□□□□ -1.34
VPS13D-201ENST00000011700 ZC4H2Q9NQZ6 224 aa6.71□□□□□ -1.34
VPS13D-201ENST00000011700 COPG1Q9Y678 874 aaKnown RBP6.71□□□□□ -1.34
VPS13D-201ENST00000011700 FLT4P35916 1363 aa6.71□□□□□ -1.34
VPS13D-201ENST00000011700 RAD54L2Q9Y4B4 1467 aa6.71□□□□□ -1.34
VPS13D-201ENST00000011700 FAM135BQ49AJ0 1406 aa6.71□□□□□ -1.34
VPS13D-201ENST00000011700 ABCC10Q5T3U5 1492 aa6.71□□□□□ -1.34
VPS13D-201ENST00000011700 IFNA8P32881 189 aa6.71□□□□□ -1.34
VPS13D-201ENST00000011700 AOC3Q16853 763 aa6.71□□□□□ -1.34
VPS13D-201ENST00000011700 ZNF569Q5MCW4 686 aa6.71□□□□□ -1.34
VPS13D-201ENST00000011700 KRT26Q7Z3Y9 468 aa6.71□□□□□ -1.34
VPS13D-201ENST00000011700 RASEFQ8IZ41 740 aa6.71□□□□□ -1.34
VPS13D-201ENST00000011700 VPS18Q9P253 973 aa6.71□□□□□ -1.34
VPS13D-201ENST00000011700 LOXHD1Q8IVV2 1947 aa6.71□□□□□ -1.34
VPS13D-201ENST00000011700 DENND4BO75064 1496 aaPredicted RBP6.71□□□□□ -1.34
VPS13D-201ENST00000011700 CEP104O60308 925 aa6.71□□□□□ -1.34
VPS13D-201ENST00000011700 ZEB2O60315 1214 aa6.71□□□□□ -1.34
VPS13D-201ENST00000011700 EEF2P13639 858 aaKnown RBP6.71□□□□□ -1.34
VPS13D-201ENST00000011700 CKAP2LQ8IYA6 745 aa6.71□□□□□ -1.34
VPS13D-201ENST00000011700 UBLCP1Q8WVY7 318 aaPredicted RBP6.71□□□□□ -1.34
VPS13D-201ENST00000011700 ZNF233A6NK53 670 aa6.71□□□□□ -1.34
VPS13D-201ENST00000011700 GOLGA8MH3BSY2 632 aa6.71□□□□□ -1.34
VPS13D-201ENST00000011700 PPM1FP49593 454 aaPredicted RBP6.71□□□□□ -1.34
VPS13D-201ENST00000011700 TAF12Q16514 161 aa6.71□□□□□ -1.34
VPS13D-201ENST00000011700 MUM1Q2TAK8 710 aa6.71□□□□□ -1.34
VPS13D-201ENST00000011700 AP1ARQ63HQ0 302 aa6.71□□□□□ -1.34
VPS13D-201ENST00000011700 ZNF449Q6P9G9 518 aa6.71□□□□□ -1.34
VPS13D-201ENST00000011700 ARHGEF5Q12774 1597 aa6.71□□□□□ -1.34
VPS13D-201ENST00000011700 NAPAP54920 295 aa6.71□□□□□ -1.34
VPS13D-201ENST00000011700 HAUS7Q99871 368 aa6.71□□□□□ -1.34
VPS13D-201ENST00000011700 CEP152O94986 1710 aa6.7□□□□□ -1.34
VPS13D-201ENST00000011700 LRRIQ1Q96JM4 1722 aa6.7□□□□□ -1.34
VPS13D-201ENST00000011700 TYW5A2RUC4 315 aaKnown RBP6.7□□□□□ -1.34
VPS13D-201ENST00000011700 CUTAO60888 179 aa6.7□□□□□ -1.34
VPS13D-201ENST00000011700 TCP1P17987 556 aaKnown RBP6.7□□□□□ -1.34
VPS13D-201ENST00000011700 ZNF445P59923 1031 aa6.7□□□□□ -1.34
VPS13D-201ENST00000011700 TTC6Q86TZ1 520 aa6.7□□□□□ -1.34
VPS13D-201ENST00000011700 PDCD7Q8N8D1 485 aaKnown RBP6.7□□□□□ -1.34
VPS13D-201ENST00000011700 TBC1D22AQ8WUA7 517 aa6.7□□□□□ -1.34
VPS13D-201ENST00000011700 TRMT112Q9UI30 125 aaKnown RBP6.7□□□□□ -1.34
VPS13D-201ENST00000011700 TRPC6Q9Y210 931 aa6.7□□□□□ -1.34
VPS13D-201ENST00000011700 WDR7Q9Y4E6 1490 aa6.7□□□□□ -1.34
VPS13D-201ENST00000011700 LRRD1A4D1F6 860 aa6.7□□□□□ -1.34
VPS13D-201ENST00000011700 BZW1Q7L1Q6 419 aaKnown RBP6.7□□□□□ -1.34
VPS13D-201ENST00000011700 NUDT16Q96DE0 195 aaKnown RBP6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms