RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 ZFP91Q96JP5 570 aaPredicted RBP12.28□□□□□ -0.44
USP28-201ENST00000003302 PARP4Q9UKK3 1724 aaKnown RBP12.27□□□□□ -0.44
USP28-201ENST00000003302 POSTNQ15063 836 aa12.27□□□□□ -0.44
USP28-201ENST00000003302 FEZ1Q99689 392 aa12.27□□□□□ -0.44
USP28-201ENST00000003302 CARD10Q9BWT7 1032 aa12.27□□□□□ -0.44
USP28-201ENST00000003302 TRIM10Q9UDY6 481 aa12.27□□□□□ -0.44
USP28-201ENST00000003302 MYH3P11055 1940 aa12.27□□□□□ -0.44
USP28-201ENST00000003302 ARID4AP29374 1257 aaPredicted RBP12.27□□□□□ -0.45
USP28-201ENST00000003302 IL17AQ16552 155 aa12.27□□□□□ -0.45
USP28-201ENST00000003302 SGMS1Q86VZ5 419 aa12.27□□□□□ -0.45
USP28-201ENST00000003302 PLA2G12BQ9BX93 195 aa12.27□□□□□ -0.45
USP28-201ENST00000003302 TADA3O75528 432 aa12.27□□□□□ -0.45
USP28-201ENST00000003302 TOP1P11387 765 aaKnown RBP12.27□□□□□ -0.45
USP28-201ENST00000003302 TBX2Q13207 712 aaPredicted RBP12.27□□□□□ -0.45
USP28-201ENST00000003302 AKNAD1Q5T1N1 836 aa12.27□□□□□ -0.45
USP28-201ENST00000003302 KIFC2Q96AC6 838 aa12.27□□□□□ -0.45
USP28-201ENST00000003302 DHX16O60231 1041 aaKnown RBP12.26□□□□□ -0.45
USP28-201ENST00000003302 TDO2P48775 406 aa12.26□□□□□ -0.45
USP28-201ENST00000003302 GSDMDP57764 484 aa12.26□□□□□ -0.45
USP28-201ENST00000003302 UBE3CQ15386 1083 aa12.26□□□□□ -0.45
USP28-201ENST00000003302 LRRC15Q8TF66 581 aa12.26□□□□□ -0.45
USP28-201ENST00000003302 PPP6R2O75170 966 aa12.26□□□□□ -0.45
USP28-201ENST00000003302 CYP2D6P10635 497 aa12.26□□□□□ -0.45
USP28-201ENST00000003302 CCT6AP40227 531 aaKnown RBP12.26□□□□□ -0.45
USP28-201ENST00000003302 RASGRP4Q8TDF6 673 aa12.26□□□□□ -0.45
USP28-201ENST00000003302 CPVLQ9H3G5 476 aa12.26□□□□□ -0.45
USP28-201ENST00000003302 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.26□□□□□ -0.45
USP28-201ENST00000003302 MYH6P13533 1939 aa12.26□□□□□ -0.45
USP28-201ENST00000003302 PATL2C9JE40 543 aaKnown RBP12.26□□□□□ -0.45
USP28-201ENST00000003302 IKBKBO14920 756 aa12.26□□□□□ -0.45
USP28-201ENST00000003302 FXR1P51114 621 aaKnown RBP eCLIP12.26□□□□□ -0.45
USP28-201ENST00000003302 GNG11P61952 73 aa12.26□□□□□ -0.45
USP28-201ENST00000003302 ZNF174Q15697 407 aa12.26□□□□□ -0.45
USP28-201ENST00000003302 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.26□□□□□ -0.45
USP28-201ENST00000003302 CREBRFQ8IUR6 639 aa12.26□□□□□ -0.45
USP28-201ENST00000003302 CRACR2BQ8N4Y2 399 aaPredicted RBP12.26□□□□□ -0.45
USP28-201ENST00000003302 KRI1Q8N9T8 703 aaKnown RBP12.26□□□□□ -0.45
USP28-201ENST00000003302 NEK11Q8NG66 645 aa12.26□□□□□ -0.45
USP28-201ENST00000003302 SLAIN2Q9P270 581 aa12.26□□□□□ -0.45
USP28-201ENST00000003302 IMPACTQ9P2X3 320 aa12.26□□□□□ -0.45
USP28-201ENST00000003302 ZRANB2O95218 330 aaKnown RBP eCLIP12.26□□□□□ -0.451e-6■■■■■ 42
USP28-201ENST00000003302 FMNL1O95466 1100 aaPredicted RBP12.26□□□□□ -0.45
USP28-201ENST00000003302 FAM47AQ5JRC9 791 aa12.26□□□□□ -0.45
USP28-201ENST00000003302 MTMR7Q9Y216 660 aa12.26□□□□□ -0.45
USP28-201ENST00000003302 PP2D1A8MPX8 630 aa12.25□□□□□ -0.45
USP28-201ENST00000003302 PTPREP23469 700 aa12.25□□□□□ -0.45
USP28-201ENST00000003302 SARSP49591 514 aaKnown RBP12.25□□□□□ -0.45
USP28-201ENST00000003302 ENAHQ8N8S7 591 aaPredicted RBP12.25□□□□□ -0.45
USP28-201ENST00000003302 ACRBPQ8NEB7 543 aa12.25□□□□□ -0.45
USP28-201ENST00000003302 SOS2Q07890 1332 aaPredicted RBP12.25□□□□□ -0.45
USP28-201ENST00000003302 NEMFO60524 1076 aa12.25□□□□□ -0.45
USP28-201ENST00000003302 ZNF654Q8IZM8 581 aa12.25□□□□□ -0.45
USP28-201ENST00000003302 PLIN2Q99541 437 aa12.25□□□□□ -0.45
USP28-201ENST00000003302 GTPBP4Q9BZE4 634 aaKnown RBP12.25□□□□□ -0.45
USP28-201ENST00000003302 V9GY48 417 aaPredicted RBP12.25□□□□□ -0.45
USP28-201ENST00000003302 LRP6O75581 1613 aa12.25□□□□□ -0.45
USP28-201ENST00000003302 TNKSO95271 1327 aa12.25□□□□□ -0.45
USP28-201ENST00000003302 SSRP1Q08945 709 aaKnown RBP12.25□□□□□ -0.45
USP28-201ENST00000003302 FUT2Q10981 343 aa12.25□□□□□ -0.45
USP28-201ENST00000003302 SYCP1Q15431 976 aa12.25□□□□□ -0.45
USP28-201ENST00000003302 KRT222Q8N1A0 295 aa12.25□□□□□ -0.45
USP28-201ENST00000003302 CDC5LQ99459 802 aaKnown RBP12.25□□□□□ -0.45
USP28-201ENST00000003302 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.25□□□□□ -0.451e-6■■■□□ 14.8
USP28-201ENST00000003302 KCND1Q9NSA2 647 aa12.25□□□□□ -0.45
USP28-201ENST00000003302 PUF60Q9UHX1 559 aaKnown RBP12.25□□□□□ -0.45
USP28-201ENST00000003302 A0A0U1RQG5 324 aaPredicted RBP12.25□□□□□ -0.45
USP28-201ENST00000003302 FAM237AA0A1B0GTK4 181 aa12.25□□□□□ -0.45
USP28-201ENST00000003302 PSDA5PKW4 1024 aaPredicted RBP12.25□□□□□ -0.45
USP28-201ENST00000003302 KCNQ2O43526 872 aa12.25□□□□□ -0.45
USP28-201ENST00000003302 TBC1D8O95759 1140 aa12.25□□□□□ -0.45
USP28-201ENST00000003302 IFNAR1P17181 557 aa12.25□□□□□ -0.45
USP28-201ENST00000003302 RBL2Q08999 1139 aa12.25□□□□□ -0.45
USP28-201ENST00000003302 ITPK1Q13572 414 aa12.25□□□□□ -0.45
USP28-201ENST00000003302 TEX35Q5T0J7 233 aa12.25□□□□□ -0.45
USP28-201ENST00000003302 MFSD6Q6ZSS7 791 aa12.25□□□□□ -0.45
USP28-201ENST00000003302 BAG1Q99933 345 aaPredicted RBP12.25□□□□□ -0.45
USP28-201ENST00000003302 NHSL1Q5SYE7 1610 aa12.24□□□□□ -0.45
USP28-201ENST00000003302 MORC3Q14149 939 aa12.24□□□□□ -0.45
USP28-201ENST00000003302 PUM3Q15397 648 aaKnown RBP12.24□□□□□ -0.45
USP28-201ENST00000003302 RTN1Q16799 776 aa12.24□□□□□ -0.45
USP28-201ENST00000003302 KLHL34Q8N239 644 aa12.24□□□□□ -0.45
USP28-201ENST00000003302 FANCBQ8NB91 859 aa12.24□□□□□ -0.45
USP28-201ENST00000003302 CCDC150Q8NCX0 1101 aa12.24□□□□□ -0.45
USP28-201ENST00000003302 SYMPKQ92797 1274 aaKnown RBP12.24□□□□□ -0.45
USP28-201ENST00000003302 ATRNO75882 1429 aa12.24□□□□□ -0.45
USP28-201ENST00000003302 AMIGO3Q86WK7 504 aa12.24□□□□□ -0.45
USP28-201ENST00000003302 RNF216Q9NWF9 866 aaPredicted RBP12.24□□□□□ -0.45
USP28-201ENST00000003302 N4BP1O75113 896 aaKnown RBP12.24□□□□□ -0.45
USP28-201ENST00000003302 SEC23AQ15436 765 aa12.24□□□□□ -0.45
USP28-201ENST00000003302 TXNRD3Q86VQ6 643 aa12.24□□□□□ -0.45
USP28-201ENST00000003302 ERCC3P19447 782 aa12.23□□□□□ -0.45
USP28-201ENST00000003302 WTAPQ15007 396 aa12.23□□□□□ -0.45
USP28-201ENST00000003302 INTS5Q6P9B9 1019 aaKnown RBP12.23□□□□□ -0.45
USP28-201ENST00000003302 LPIN2Q92539 896 aa12.23□□□□□ -0.45
USP28-201ENST00000003302 CICQ96RK0 1608 aaPredicted RBP12.23□□□□□ -0.45
USP28-201ENST00000003302 ABCC12Q96J65 1359 aa12.23□□□□□ -0.45
USP28-201ENST00000003302 TRIM49BA6NDI0 452 aa12.23□□□□□ -0.45
USP28-201ENST00000003302 H3BQF6 201 aa12.23□□□□□ -0.45
USP28-201ENST00000003302 PDE8AO60658 829 aa12.23□□□□□ -0.45
USP28-201ENST00000003302 CHRNDQ07001 517 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms