RNA–Protein interactions for RNA: ENST00000583804.2

TOP3A-216, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 5

Gene TOP3A, Length 1,465 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-216ENST00000583804 ZNF213O14771 459 aa13.02□□□□□ -0.33
TOP3A-216ENST00000583804 SLURP2P0DP57 97 aa13.02□□□□□ -0.33
TOP3A-216ENST00000583804 NF2P35240 595 aa13.02□□□□□ -0.33
TOP3A-216ENST00000583804 PPARAQ07869 468 aa13.02□□□□□ -0.33
TOP3A-216ENST00000583804 PRKG1Q13976 671 aa13.02□□□□□ -0.33
TOP3A-216ENST00000583804 IMMTQ16891 758 aaKnown RBP13.02□□□□□ -0.33
TOP3A-216ENST00000583804 FOXP4Q8IVH2 680 aaPredicted RBP13.02□□□□□ -0.33
TOP3A-216ENST00000583804 RBM46Q8TBY0 533 aaKnown RBP13.02□□□□□ -0.33
TOP3A-216ENST00000583804 HOOK2Q96ED9 719 aa13.02□□□□□ -0.33
TOP3A-216ENST00000583804 ATRNL1Q5VV63 1379 aa13.02□□□□□ -0.33
TOP3A-216ENST00000583804 SMIM22K7EJ46 135 aa13.01□□□□□ -0.33
TOP3A-216ENST00000583804 ITGBL1O95965 494 aaPredicted RBP13.01□□□□□ -0.33
TOP3A-216ENST00000583804 SLC3A2P08195 630 aaKnown RBP13.01□□□□□ -0.33
TOP3A-216ENST00000583804 ANP32AP39687 249 aaKnown RBP13.01□□□□□ -0.33
TOP3A-216ENST00000583804 TTLL12Q14166 644 aaPredicted RBP13.01□□□□□ -0.33
TOP3A-216ENST00000583804 DYNLL2Q96FJ2 89 aa13.01□□□□□ -0.33
TOP3A-216ENST00000583804 SERPINB13Q9UIV8 391 aa13.01□□□□□ -0.33
TOP3A-216ENST00000583804 CDK5RAP2Q96SN8 1893 aa13.01□□□□□ -0.33
TOP3A-216ENST00000583804 NAV1Q8NEY1 1877 aa13□□□□□ -0.33
TOP3A-216ENST00000583804 COL2A1P02458 1487 aaPredicted RBP13□□□□□ -0.33
TOP3A-216ENST00000583804 ZMYM6O95789 1325 aa13□□□□□ -0.33
TOP3A-216ENST00000583804 FAM196BA6NMK8 535 aa13□□□□□ -0.33
TOP3A-216ENST00000583804 MCCP23508 829 aa13□□□□□ -0.33
TOP3A-216ENST00000583804 CTDSPL2Q05D32 466 aa13□□□□□ -0.33
TOP3A-216ENST00000583804 DCAF15Q66K64 600 aa13□□□□□ -0.33
TOP3A-216ENST00000583804 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13□□□□□ -0.33
TOP3A-216ENST00000583804 TAF6LQ9Y6J9 622 aa13□□□□□ -0.33
TOP3A-216ENST00000583804 MYH1P12882 1939 aa13□□□□□ -0.33
TOP3A-216ENST00000583804 BAZ2AQ9UIF9 1905 aaKnown RBP13□□□□□ -0.33
TOP3A-216ENST00000583804 FOCADQ5VW36 1801 aa13□□□□□ -0.33
TOP3A-216ENST00000583804 PPP1R12BO60237 982 aaPredicted RBP12.99□□□□□ -0.33
TOP3A-216ENST00000583804 CELF2O95319 508 aaKnown RBP12.99□□□□□ -0.33
TOP3A-216ENST00000583804 SLC44A5Q8NCS7 719 aa12.99□□□□□ -0.33
TOP3A-216ENST00000583804 EHD4Q9H223 541 aa12.99□□□□□ -0.33
TOP3A-216ENST00000583804 MKNK2Q9HBH9 465 aa12.99□□□□□ -0.33
TOP3A-216ENST00000583804 HERC5Q9UII4 1024 aaKnown RBP12.99□□□□□ -0.33
TOP3A-216ENST00000583804 FZD1Q9UP38 647 aa12.99□□□□□ -0.33
TOP3A-216ENST00000583804 SLC27A2O14975 620 aa12.98□□□□□ -0.33
TOP3A-216ENST00000583804 PRDM1O75626 825 aa12.98□□□□□ -0.33
TOP3A-216ENST00000583804 CYP21A2P08686 494 aa12.98□□□□□ -0.33
TOP3A-216ENST00000583804 CDK8P49336 464 aa12.98□□□□□ -0.33
TOP3A-216ENST00000583804 PDE4BQ07343 736 aa12.98□□□□□ -0.33
TOP3A-216ENST00000583804 FSTL1Q12841 308 aa12.98□□□□□ -0.33
TOP3A-216ENST00000583804 NECTIN1Q15223 517 aa12.98□□□□□ -0.33
TOP3A-216ENST00000583804 RNF20Q5VTR2 975 aa12.98□□□□□ -0.33
TOP3A-216ENST00000583804 CREB3L3Q68CJ9 461 aa12.98□□□□□ -0.33
TOP3A-216ENST00000583804 RASEFQ8IZ41 740 aa12.98□□□□□ -0.33
TOP3A-216ENST00000583804 IPO9Q96P70 1041 aaKnown RBP12.98□□□□□ -0.33
TOP3A-216ENST00000583804 ZNF341Q9BYN7 854 aa12.98□□□□□ -0.33
TOP3A-216ENST00000583804 INCENPQ9NQS7 918 aa12.98□□□□□ -0.33
TOP3A-216ENST00000583804 TOMM22Q9NS69 142 aa12.98□□□□□ -0.33
TOP3A-216ENST00000583804 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.98□□□□□ -0.33
TOP3A-216ENST00000583804 SWAP70Q9UH65 585 aa12.98□□□□□ -0.33
TOP3A-216ENST00000583804 ANAPC4Q9UJX5 808 aa12.98□□□□□ -0.33
TOP3A-216ENST00000583804 EPB41L2O43491 1005 aaKnown RBP12.97□□□□□ -0.33
TOP3A-216ENST00000583804 TBC1D12O60347 775 aa12.97□□□□□ -0.33
TOP3A-216ENST00000583804 GABPAQ06546 454 aa12.97□□□□□ -0.33
TOP3A-216ENST00000583804 RRP12Q5JTH9 1297 aaKnown RBP12.97□□□□□ -0.33
TOP3A-216ENST00000583804 AKNAD1Q5T1N1 836 aa12.97□□□□□ -0.33
TOP3A-216ENST00000583804 MFSD6Q6ZSS7 791 aa12.97□□□□□ -0.33
TOP3A-216ENST00000583804 C16orf86Q6ZW13 317 aa12.97□□□□□ -0.33
TOP3A-216ENST00000583804 MOB2Q70IA6 237 aa12.97□□□□□ -0.33
TOP3A-216ENST00000583804 ZNF287Q9HBT7 754 aa12.97□□□□□ -0.33
TOP3A-216ENST00000583804 ANGEL1Q9UNK9 670 aaKnown RBP12.97□□□□□ -0.33
TOP3A-216ENST00000583804 SSC5DA1L4H1 1573 aa12.97□□□□□ -0.33
TOP3A-216ENST00000583804 USP2O75604 605 aaPredicted RBP12.97□□□□□ -0.33
TOP3A-216ENST00000583804 CPA1P15085 419 aa12.97□□□□□ -0.33
TOP3A-216ENST00000583804 ZKSCAN1P17029 563 aaPredicted RBP12.97□□□□□ -0.33
TOP3A-216ENST00000583804 SHMT1P34896 483 aa12.97□□□□□ -0.33
TOP3A-216ENST00000583804 HSPA4P34932 840 aa12.97□□□□□ -0.33
TOP3A-216ENST00000583804 IREB2P48200 963 aaKnown RBP12.97□□□□□ -0.33
TOP3A-216ENST00000583804 RBM25P49756 843 aaKnown RBP12.97□□□□□ -0.33
TOP3A-216ENST00000583804 MAP3K10Q02779 954 aa12.97□□□□□ -0.33
TOP3A-216ENST00000583804 CERKLQ49MI3 558 aaPredicted RBP12.97□□□□□ -0.33
TOP3A-216ENST00000583804 ARMC9Q7Z3E5 817 aa12.97□□□□□ -0.33
TOP3A-216ENST00000583804 METTL16Q86W50 562 aaKnown RBP12.97□□□□□ -0.33
TOP3A-216ENST00000583804 TBC1D10CQ8IV04 446 aa12.97□□□□□ -0.33
TOP3A-216ENST00000583804 ZNF444Q8N0Y2 327 aaPredicted RBP12.97□□□□□ -0.33
TOP3A-216ENST00000583804 C2orf69Q8N8R5 385 aa12.97□□□□□ -0.33
TOP3A-216ENST00000583804 WRNIP1Q96S55 665 aa12.97□□□□□ -0.33
TOP3A-216ENST00000583804 NBPF3Q9H094 633 aa12.97□□□□□ -0.33
TOP3A-216ENST00000583804 RNF41Q9H4P4 317 aaPredicted RBP12.97□□□□□ -0.33
TOP3A-216ENST00000583804 DNAJC18Q9H819 358 aa12.97□□□□□ -0.33
TOP3A-216ENST00000583804 GBA2Q9HCG7 927 aaPredicted RBP12.97□□□□□ -0.33
TOP3A-216ENST00000583804 SNX14Q9Y5W7 946 aa12.97□□□□□ -0.33
TOP3A-216ENST00000583804 PASKQ96RG2 1323 aa12.96□□□□□ -0.33
TOP3A-216ENST00000583804 UBE2Q2LH0YL09 131 aa12.96□□□□□ -0.34
TOP3A-216ENST00000583804 MPHOSPH10O00566 681 aaKnown RBP12.96□□□□□ -0.34
TOP3A-216ENST00000583804 TRDNQ13061 729 aa12.96□□□□□ -0.34
TOP3A-216ENST00000583804 CST9Q5W186 159 aa12.96□□□□□ -0.34
TOP3A-216ENST00000583804 NOL8Q76FK4 1167 aaKnown RBP12.96□□□□□ -0.34
TOP3A-216ENST00000583804 STAG1Q8WVM7 1258 aa12.96□□□□□ -0.34
TOP3A-216ENST00000583804 KIF2CQ99661 725 aa12.96□□□□□ -0.34
TOP3A-216ENST00000583804 UPF3BQ9BZI7 483 aaKnown RBP12.96□□□□□ -0.34
TOP3A-216ENST00000583804 DDX60LQ5H9U9 1706 aaKnown RBP12.96□□□□□ -0.34
TOP3A-216ENST00000583804 ROBO3Q96MS0 1386 aa12.95□□□□□ -0.34
TOP3A-216ENST00000583804 PHF20L1A8MW92 1017 aa12.95□□□□□ -0.34
TOP3A-216ENST00000583804 E7EWF7 191 aa12.95□□□□□ -0.34
TOP3A-216ENST00000583804 RANBP6O60518 1105 aaKnown RBP12.95□□□□□ -0.34
TOP3A-216ENST00000583804 GDF11O95390 407 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 69.7 ms