RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 ZMYND15Q9H091 742 aa11.66□□□□□ -0.54
VPS53-220ENST00000576149 ECM29Q5VYK3 1845 aa11.66□□□□□ -0.54
VPS53-220ENST00000576149 MMP1P03956 469 aa11.65□□□□□ -0.54
VPS53-220ENST00000576149 GUCY1A2P33402 732 aa11.65□□□□□ -0.54
VPS53-220ENST00000576149 ZRSR1Q15695 479 aaKnown RBP11.65□□□□□ -0.54
VPS53-220ENST00000576149 FAM98CQ17RN3 349 aaKnown RBP11.65□□□□□ -0.54
VPS53-220ENST00000576149 DPCR1Q3MIW9 517 aa11.65□□□□□ -0.54
VPS53-220ENST00000576149 SHC4Q6S5L8 630 aa11.65□□□□□ -0.54
VPS53-220ENST00000576149 NBPF11Q86T75 865 aa11.65□□□□□ -0.54
VPS53-220ENST00000576149 FAM84BQ96KN1 310 aaPredicted RBP11.65□□□□□ -0.54
VPS53-220ENST00000576149 BCL2L12Q9HB09 334 aa11.65□□□□□ -0.54
VPS53-220ENST00000576149 CCDC196A0A1B0GTZ2 297 aa11.65□□□□□ -0.55
VPS53-220ENST00000576149 SYKP43405 635 aa11.65□□□□□ -0.55
VPS53-220ENST00000576149 NLRP12P59046 1061 aa11.65□□□□□ -0.55
VPS53-220ENST00000576149 TBC1D9BQ66K14 1250 aa11.65□□□□□ -0.55
VPS53-220ENST00000576149 NOSTRINQ8IVI9 506 aa11.65□□□□□ -0.55
VPS53-220ENST00000576149 TRIM22Q8IYM9 498 aa11.65□□□□□ -0.55
VPS53-220ENST00000576149 STK11IPQ8N1F8 1099 aa11.65□□□□□ -0.55
VPS53-220ENST00000576149 CRACR2BQ8N4Y2 399 aaPredicted RBP11.65□□□□□ -0.55
VPS53-220ENST00000576149 CACTINQ8WUQ7 758 aaKnown RBP11.65□□□□□ -0.55
VPS53-220ENST00000576149 CELF1Q92879 486 aaKnown RBP11.65□□□□□ -0.55
VPS53-220ENST00000576149 PRDM10Q9NQV6 1147 aa11.65□□□□□ -0.55
VPS53-220ENST00000576149 A0A1B0GUL6 1792 aa11.64□□□□□ -0.55
VPS53-220ENST00000576149 MINDY4BA8MYZ0 360 aa11.64□□□□□ -0.55
VPS53-220ENST00000576149 KCNQ4P56696 695 aa11.64□□□□□ -0.55
VPS53-220ENST00000576149 SEC23AQ15436 765 aa11.64□□□□□ -0.55
VPS53-220ENST00000576149 RESP18Q5W5W9 173 aa11.64□□□□□ -0.55
VPS53-220ENST00000576149 BICDL1Q6ZP65 573 aa11.64□□□□□ -0.55
VPS53-220ENST00000576149 ZNF654Q8IZM8 581 aa11.64□□□□□ -0.55
VPS53-220ENST00000576149 FANCBQ8NB91 859 aa11.64□□□□□ -0.55
VPS53-220ENST00000576149 ESR2Q92731 530 aa11.64□□□□□ -0.55
VPS53-220ENST00000576149 FBXW7Q969H0 707 aa11.64□□□□□ -0.55
VPS53-220ENST00000576149 UBAC1Q9BSL1 405 aa11.64□□□□□ -0.55
VPS53-220ENST00000576149 CUTAO60888 179 aa11.64□□□□□ -0.55
VPS53-220ENST00000576149 DEXIO95424 95 aa11.64□□□□□ -0.55
VPS53-220ENST00000576149 GTF2E1P29083 439 aaPredicted RBP11.64□□□□□ -0.55
VPS53-220ENST00000576149 SAFBQ15424 915 aaKnown RBP eCLIP11.64□□□□□ -0.55
VPS53-220ENST00000576149 FBXO33Q7Z6M2 555 aa11.64□□□□□ -0.55
VPS53-220ENST00000576149 CACNA1SQ13698 1873 aa11.63□□□□□ -0.55
VPS53-220ENST00000576149 BTBD18B2RXH4 712 aa11.63□□□□□ -0.55
VPS53-220ENST00000576149 GTF2F1P35269 517 aaKnown RBP eCLIP11.63□□□□□ -0.55
VPS53-220ENST00000576149 RC3H1Q5TC82 1133 aaKnown RBP11.63□□□□□ -0.55
VPS53-220ENST00000576149 LRRC8AQ8IWT6 810 aa11.63□□□□□ -0.55
VPS53-220ENST00000576149 DIS3L2Q8IYB7 885 aaKnown RBP11.63□□□□□ -0.55
VPS53-220ENST00000576149 ZNF384Q8TF68 577 aa11.63□□□□□ -0.55
VPS53-220ENST00000576149 CLIC6Q96NY7 704 aa11.63□□□□□ -0.55
VPS53-220ENST00000576149 BRIP1Q9BX63 1249 aa11.63□□□□□ -0.55
VPS53-220ENST00000576149 NYXQ9GZU5 481 aa11.63□□□□□ -0.55
VPS53-220ENST00000576149 FOXP1Q9H334 677 aaPredicted RBP11.63□□□□□ -0.55
VPS53-220ENST00000576149 NARFQ9UHQ1 456 aa11.63□□□□□ -0.55
VPS53-220ENST00000576149 TUBE1Q9UJT0 475 aa11.63□□□□□ -0.55
VPS53-220ENST00000576149 SCN7AQ01118 1682 aa11.63□□□□□ -0.55
VPS53-220ENST00000576149 SMIM22K7EJ46 135 aa11.62□□□□□ -0.55
VPS53-220ENST00000576149 BIN1O00499 593 aa11.62□□□□□ -0.55
VPS53-220ENST00000576149 SEMA3EO15041 775 aa11.62□□□□□ -0.55
VPS53-220ENST00000576149 NEMFO60524 1076 aa11.62□□□□□ -0.55
VPS53-220ENST00000576149 DYNLL1P63167 89 aaKnown RBP11.62□□□□□ -0.55
VPS53-220ENST00000576149 PPP2R5BQ15173 497 aa11.62□□□□□ -0.55
VPS53-220ENST00000576149 VPS72Q15906 364 aa11.62□□□□□ -0.55
VPS53-220ENST00000576149 NUP133Q8WUM0 1156 aa11.62□□□□□ -0.55
VPS53-220ENST00000576149 KCNJ14Q9UNX9 436 aa11.62□□□□□ -0.55
VPS53-220ENST00000576149 TNKSO95271 1327 aa11.62□□□□□ -0.55
VPS53-220ENST00000576149 FGRP09769 529 aa11.62□□□□□ -0.55
VPS53-220ENST00000576149 TAF1P21675 1872 aa11.62□□□□□ -0.55
VPS53-220ENST00000576149 TOB1P50616 345 aaPredicted RBP11.62□□□□□ -0.55
VPS53-220ENST00000576149 RPS8P62241 208 aaKnown RBP11.62□□□□□ -0.55
VPS53-220ENST00000576149 SMIM5Q71RC9 77 aa11.62□□□□□ -0.55
VPS53-220ENST00000576149 CMTR1Q8N1G2 835 aaKnown RBP11.62□□□□□ -0.55
VPS53-220ENST00000576149 PDS5AQ29RF7 1337 aaKnown RBP11.62□□□□□ -0.55
VPS53-220ENST00000576149 RPS6KA4O75676 772 aa11.61□□□□□ -0.55
VPS53-220ENST00000576149 NCAPHQ15003 741 aa11.61□□□□□ -0.55
VPS53-220ENST00000576149 RILPL1Q5EBL4 403 aa11.61□□□□□ -0.55
VPS53-220ENST00000576149 PTF1AQ7RTS3 328 aa11.61□□□□□ -0.55
VPS53-220ENST00000576149 CCDC82Q8N4S0 544 aa11.61□□□□□ -0.55
VPS53-220ENST00000576149 KRI1Q8N9T8 703 aaKnown RBP11.61□□□□□ -0.55
VPS53-220ENST00000576149 NLRP3Q96P20 1036 aa11.61□□□□□ -0.55
VPS53-220ENST00000576149 ZSCAN10Q96SZ4 725 aaPredicted RBP11.61□□□□□ -0.55
VPS53-220ENST00000576149 SETDB2Q96T68 719 aa11.61□□□□□ -0.55
VPS53-220ENST00000576149 PDCL3Q9H2J4 239 aa11.61□□□□□ -0.55
VPS53-220ENST00000576149 CASZ1Q86V15 1759 aa11.61□□□□□ -0.55
VPS53-220ENST00000576149 SMTNL1A8MU46 457 aa11.61□□□□□ -0.55
VPS53-220ENST00000576149 PCP11498 1178 aaKnown RBP11.61□□□□□ -0.55
VPS53-220ENST00000576149 KLRK1P26718 216 aa11.61□□□□□ -0.55
VPS53-220ENST00000576149 PIP4K2BP78356 416 aa11.61□□□□□ -0.55
VPS53-220ENST00000576149 ENAHQ8N8S7 591 aaPredicted RBP11.61□□□□□ -0.55
VPS53-220ENST00000576149 NSUN4Q96CB9 384 aaKnown RBP11.61□□□□□ -0.55
VPS53-220ENST00000576149 RNF26Q9BY78 433 aaPredicted RBP11.61□□□□□ -0.55
VPS53-220ENST00000576149 FAM13BQ9NYF5 915 aa11.61□□□□□ -0.55
VPS53-220ENST00000576149 DUOX1Q9NRD9 1551 aa11.61□□□□□ -0.55
VPS53-220ENST00000576149 IKBKBO14920 756 aa11.6□□□□□ -0.55
VPS53-220ENST00000576149 ARID5BQ14865 1188 aa11.6□□□□□ -0.55
VPS53-220ENST00000576149 LONRF3Q496Y0 759 aa11.6□□□□□ -0.55
VPS53-220ENST00000576149 CTR9Q6PD62 1173 aa11.6□□□□□ -0.55
VPS53-220ENST00000576149 KRBA2Q6ZNG9 492 aa11.6□□□□□ -0.55
VPS53-220ENST00000576149 FILIP1Q7Z7B0 1213 aa11.6□□□□□ -0.55
VPS53-220ENST00000576149 ELOA2Q8IYF1 753 aaPredicted RBP11.6□□□□□ -0.55
VPS53-220ENST00000576149 ANKRD2Q9GZV1 360 aa11.6□□□□□ -0.55
VPS53-220ENST00000576149 SRP68Q9UHB9 627 aaKnown RBP11.6□□□□□ -0.55
VPS53-220ENST00000576149 KCNH3Q9ULD8 1083 aa11.6□□□□□ -0.55
VPS53-220ENST00000576149 CYP2D7A0A087X1C5 515 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms