RNA–Protein interactions for RNA: ENST00000568472.6

CLN3-234, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 1,011 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-234ENST00000568472 PHF20L1A8MW92 1017 aa26.31■■□□□ 1.8
CLN3-234ENST00000568472 NOGQ13253 232 aa26.31■■□□□ 1.8
CLN3-234ENST00000568472 NMIQ13287 307 aaPredicted RBP26.31■■□□□ 1.8
CLN3-234ENST00000568472 CYP4F22Q6NT55 531 aa26.31■■□□□ 1.8
CLN3-234ENST00000568472 FAM227BQ96M60 508 aa26.31■■□□□ 1.8
CLN3-234ENST00000568472 SERPINB13Q9UIV8 391 aa26.31■■□□□ 1.8
CLN3-234ENST00000568472 CTNND1O60716 968 aaKnown RBP26.3■■□□□ 1.8
CLN3-234ENST00000568472 APPP05067 770 aa26.3■■□□□ 1.8
CLN3-234ENST00000568472 SLC10A3P09131 477 aa26.3■■□□□ 1.8
CLN3-234ENST00000568472 MAP2K2P36507 400 aa26.3■■□□□ 1.8
CLN3-234ENST00000568472 VGLL4Q14135 290 aa26.3■■□□□ 1.8
CLN3-234ENST00000568472 ARPP21Q9UBL0 812 aaPredicted RBP26.3■■□□□ 1.8
CLN3-234ENST00000568472 A0A0D9SFI3 127 aa26.29■■□□□ 1.8
CLN3-234ENST00000568472 SBK1Q52WX2 424 aa26.29■■□□□ 1.8
CLN3-234ENST00000568472 NOL9Q5SY16 702 aaKnown RBP26.29■■□□□ 1.8
CLN3-234ENST00000568472 RUFY2Q8WXA3 655 aa26.29■■□□□ 1.8
CLN3-234ENST00000568472 FOCADQ5VW36 1801 aa26.29■■□□□ 1.8
CLN3-234ENST00000568472 FAM155AB1AL88 458 aaPredicted RBP26.28■■□□□ 1.8
CLN3-234ENST00000568472 USP17L12C9JPN9 530 aa26.28■■□□□ 1.8
CLN3-234ENST00000568472 USP17L21D6R901 530 aa26.28■■□□□ 1.8
CLN3-234ENST00000568472 ZBTB48P10074 688 aaPredicted RBP26.28■■□□□ 1.8
CLN3-234ENST00000568472 CWC27Q6UX04 472 aaKnown RBP26.28■■□□□ 1.8
CLN3-234ENST00000568472 RASAL3Q86YV0 1011 aa26.28■■□□□ 1.8
CLN3-234ENST00000568472 REM2Q8IYK8 340 aaPredicted RBP26.28■■□□□ 1.8
CLN3-234ENST00000568472 ZKSCAN4Q969J2 545 aaPredicted RBP26.28■■□□□ 1.8
CLN3-234ENST00000568472 CLMNQ96JQ2 1002 aa26.28■■□□□ 1.8
CLN3-234ENST00000568472 GINM1Q9NU53 330 aa26.28■■□□□ 1.8
CLN3-234ENST00000568472 TDO2P48775 406 aa26.27■■□□□ 1.8
CLN3-234ENST00000568472 PLCD1P51178 756 aa26.27■■□□□ 1.8
CLN3-234ENST00000568472 C12orf60Q5U649 245 aa26.27■■□□□ 1.8
CLN3-234ENST00000568472 CTR9Q6PD62 1173 aa26.27■■□□□ 1.8
CLN3-234ENST00000568472 IFNL3Q8IZI9 196 aa26.27■■□□□ 1.8
CLN3-234ENST00000568472 AK9Q5TCS8 1911 aa26.26■■□□□ 1.79
CLN3-234ENST00000568472 CCDC171Q6TFL3 1326 aa26.26■■□□□ 1.79
CLN3-234ENST00000568472 INPP5BP32019 993 aa26.26■■□□□ 1.79
CLN3-234ENST00000568472 GRM1Q13255 1194 aa26.26■■□□□ 1.79
CLN3-234ENST00000568472 ERO1BQ86YB8 467 aa26.26■■□□□ 1.79
CLN3-234ENST00000568472 SCYL3Q8IZE3 742 aa26.26■■□□□ 1.79
CLN3-234ENST00000568472 PICK1Q9NRD5 415 aa26.26■■□□□ 1.79
CLN3-234ENST00000568472 SWAP70Q9UH65 585 aa26.26■■□□□ 1.79
CLN3-234ENST00000568472 SNCAIPQ9Y6H5 919 aa26.26■■□□□ 1.79
CLN3-234ENST00000568472 CDK5RAP2Q96SN8 1893 aa26.25■■□□□ 1.79
CLN3-234ENST00000568472 RAD50Q92878 1312 aa26.25■■□□□ 1.79
CLN3-234ENST00000568472 CHMLP26374 656 aa26.25■■□□□ 1.79
CLN3-234ENST00000568472 GABPAQ06546 454 aa26.25■■□□□ 1.79
CLN3-234ENST00000568472 ALX1Q15699 326 aa26.25■■□□□ 1.79
CLN3-234ENST00000568472 SPRYD7Q5W111 196 aa26.25■■□□□ 1.79
CLN3-234ENST00000568472 TATDN1Q6P1N9 297 aa26.25■■□□□ 1.79
CLN3-234ENST00000568472 CCDC129Q6ZRS4 1044 aa26.25■■□□□ 1.79
CLN3-234ENST00000568472 NAPBQ9H115 298 aa26.25■■□□□ 1.79
CLN3-234ENST00000568472 ELP3Q9H9T3 547 aa26.25■■□□□ 1.79
CLN3-234ENST00000568472 SPDYE5A6NIY4 337 aa26.24■■□□□ 1.79
CLN3-234ENST00000568472 CAP2P40123 477 aa26.24■■□□□ 1.79
CLN3-234ENST00000568472 PPATQ06203 517 aa26.24■■□□□ 1.79
CLN3-234ENST00000568472 SKAP1Q86WV1 359 aa26.24■■□□□ 1.79
CLN3-234ENST00000568472 JMYQ8N9B5 988 aa26.24■■□□□ 1.79
CLN3-234ENST00000568472 WNK4Q96J92 1243 aa26.24■■□□□ 1.79
CLN3-234ENST00000568472 FAM196BA6NMK8 535 aa26.23■■□□□ 1.79
CLN3-234ENST00000568472 SLC4A8Q2Y0W8 1093 aa26.23■■□□□ 1.79
CLN3-234ENST00000568472 OPTNQ96CV9 577 aa26.23■■□□□ 1.79
CLN3-234ENST00000568472 DNAJC18Q9H819 358 aa26.23■■□□□ 1.79
CLN3-234ENST00000568472 EPB41L4AQ9HCS5 686 aaPredicted RBP26.23■■□□□ 1.79
CLN3-234ENST00000568472 HSPD1P10809 573 aaKnown RBP26.22■■□□□ 1.79
CLN3-234ENST00000568472 INHBEP58166 350 aa26.22■■□□□ 1.79
CLN3-234ENST00000568472 ZNF589Q86UQ0 364 aaPredicted RBP26.22■■□□□ 1.79
CLN3-234ENST00000568472 TBC1D2Q9BYX2 928 aa26.22■■□□□ 1.79
CLN3-234ENST00000568472 ZNF287Q9HBT7 754 aa26.22■■□□□ 1.79
CLN3-234ENST00000568472 SLC3A2P08195 630 aaKnown RBP26.21■■□□□ 1.79
CLN3-234ENST00000568472 ASNSP08243 561 aa26.21■■□□□ 1.79
CLN3-234ENST00000568472 CYP2D6P10635 497 aa26.21■■□□□ 1.79
CLN3-234ENST00000568472 ZMYM6O95789 1325 aa26.2■■□□□ 1.79
CLN3-234ENST00000568472 MYH1P12882 1939 aa26.2■■□□□ 1.79
CLN3-234ENST00000568472 MANSC4A6NHS7 340 aaPredicted RBP26.2■■□□□ 1.78
CLN3-234ENST00000568472 MINDY4BA8MYZ0 360 aa26.2■■□□□ 1.78
CLN3-234ENST00000568472 SLURP2P0DP57 97 aa26.2■■□□□ 1.78
CLN3-234ENST00000568472 MAP2K1Q02750 393 aaPredicted RBP26.2■■□□□ 1.78
CLN3-234ENST00000568472 PPIL2Q13356 520 aa26.2■■□□□ 1.78
CLN3-234ENST00000568472 CERKLQ49MI3 558 aaPredicted RBP26.2■■□□□ 1.78
CLN3-234ENST00000568472 CASC1Q6TDU7 716 aa26.2■■□□□ 1.78
CLN3-234ENST00000568472 C16orf86Q6ZW13 317 aa26.2■■□□□ 1.78
CLN3-234ENST00000568472 ZBTB4Q9P1Z0 1013 aaPredicted RBP26.2■■□□□ 1.78
CLN3-234ENST00000568472 DDX60LQ5H9U9 1706 aaKnown RBP26.19■■□□□ 1.78
CLN3-234ENST00000568472 NAV1Q8NEY1 1877 aa26.19■■□□□ 1.78
CLN3-234ENST00000568472 FOXP2O15409 715 aa26.19■■□□□ 1.78
CLN3-234ENST00000568472 AOC2O75106 756 aa26.19■■□□□ 1.78
CLN3-234ENST00000568472 PTPRAP18433 802 aa26.19■■□□□ 1.78
CLN3-234ENST00000568472 SHMT1P34896 483 aa26.19■■□□□ 1.78
CLN3-234ENST00000568472 KIF23Q02241 960 aaPredicted RBP26.19■■□□□ 1.78
CLN3-234ENST00000568472 SREBF2Q12772 1141 aa26.19■■□□□ 1.78
CLN3-234ENST00000568472 VPS53Q5VIR6 699 aa26.19■■□□□ 1.78
CLN3-234ENST00000568472 OTUD5Q96G74 571 aa26.19■■□□□ 1.78
CLN3-234ENST00000568472 CCDC17Q96LX7 622 aa26.19■■□□□ 1.78
CLN3-234ENST00000568472 DSCC1Q9BVC3 393 aa26.19■■□□□ 1.78
CLN3-234ENST00000568472 CYP2D7A0A087X1C5 515 aa26.18■■□□□ 1.78
CLN3-234ENST00000568472 FGAP02671 866 aa26.18■■□□□ 1.78
CLN3-234ENST00000568472 GTF2A2P52657 109 aa26.18■■□□□ 1.78
CLN3-234ENST00000568472 CABP5Q9NP86 173 aa26.18■■□□□ 1.78
CLN3-234ENST00000568472 ROBO3Q96MS0 1386 aa26.18■■□□□ 1.78
CLN3-234ENST00000568472 CXCL11O14625 94 aa26.17■■□□□ 1.78
CLN3-234ENST00000568472 CDK8P49336 464 aa26.17■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms