RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 BICC1Q9H694 974 aaKnown RBP15.48■□□□□ 0.07
SHMT2-230ENST00000557427 AK9Q5TCS8 1911 aa15.48■□□□□ 0.07
SHMT2-230ENST00000557427 LHX8Q68G74 356 aa15.47■□□□□ 0.07
SHMT2-230ENST00000557427 VPS37DQ86XT2 251 aa15.47■□□□□ 0.07
SHMT2-230ENST00000557427 AGTPBP1Q9UPW5 1226 aa15.47■□□□□ 0.07
SHMT2-230ENST00000557427 DAGLAQ9Y4D2 1042 aa15.47■□□□□ 0.07
SHMT2-230ENST00000557427 UTYO14607 1347 aa15.46■□□□□ 0.07
SHMT2-230ENST00000557427 TRIM75PA6NK02 468 aa15.46■□□□□ 0.07
SHMT2-230ENST00000557427 TNFRSF10AO00220 468 aa15.46■□□□□ 0.07
SHMT2-230ENST00000557427 FRAT2O75474 233 aaPredicted RBP15.46■□□□□ 0.07
SHMT2-230ENST00000557427 PLA2G5P39877 138 aa15.46■□□□□ 0.07
SHMT2-230ENST00000557427 SH3BP5LQ7L8J4 393 aa15.46■□□□□ 0.07
SHMT2-230ENST00000557427 API5Q9BZZ5 524 aaKnown RBP15.46■□□□□ 0.07
SHMT2-230ENST00000557427 SUGT1Q9Y2Z0 365 aa15.46■□□□□ 0.07
SHMT2-230ENST00000557427 MAST3O60307 1309 aa15.45■□□□□ 0.06
SHMT2-230ENST00000557427 PRKAR2AP13861 404 aaKnown RBP15.45■□□□□ 0.06
SHMT2-230ENST00000557427 DIXDC1Q155Q3 683 aa15.45■□□□□ 0.06
SHMT2-230ENST00000557427 ANKRD44Q8N8A2 993 aa15.45■□□□□ 0.06
SHMT2-230ENST00000557427 PICK1Q9NRD5 415 aa15.45■□□□□ 0.06
SHMT2-230ENST00000557427 CYP2B6P20813 491 aa15.44■□□□□ 0.06
SHMT2-230ENST00000557427 MAP3K10Q02779 954 aa15.44■□□□□ 0.06
SHMT2-230ENST00000557427 SHHQ15465 462 aa15.44■□□□□ 0.06
SHMT2-230ENST00000557427 LRRC24Q50LG9 513 aa15.44■□□□□ 0.06
SHMT2-230ENST00000557427 CAVIN4Q5BKX8 364 aa15.44■□□□□ 0.06
SHMT2-230ENST00000557427 C9orf50Q5SZB4 431 aa15.44■□□□□ 0.06
SHMT2-230ENST00000557427 VGLL2Q8N8G2 317 aa15.44■□□□□ 0.06
SHMT2-230ENST00000557427 KLHDC4Q8TBB5 520 aa15.44■□□□□ 0.06
SHMT2-230ENST00000557427 FRAT1Q92837 279 aaPredicted RBP15.44■□□□□ 0.06
SHMT2-230ENST00000557427 MROH5Q6ZUA9 1318 aa15.43■□□□□ 0.06
SHMT2-230ENST00000557427 CCND3P30281 292 aaPredicted RBP15.43■□□□□ 0.06
SHMT2-230ENST00000557427 CACNB2Q08289 660 aaPredicted RBP15.43■□□□□ 0.06
SHMT2-230ENST00000557427 USP38Q8NB14 1042 aa15.43■□□□□ 0.06
SHMT2-230ENST00000557427 USP40Q9NVE5 1235 aa15.43■□□□□ 0.06
SHMT2-230ENST00000557427 PEX10O60683 326 aa15.42■□□□□ 0.06
SHMT2-230ENST00000557427 FOSL2P15408 326 aa15.42■□□□□ 0.06
SHMT2-230ENST00000557427 AAMPQ13685 434 aa15.42■□□□□ 0.06
SHMT2-230ENST00000557427 RABL6Q3YEC7 729 aaPredicted RBP15.42■□□□□ 0.06
SHMT2-230ENST00000557427 TJAP1Q5JTD0 557 aa15.42■□□□□ 0.06
SHMT2-230ENST00000557427 LBHD1Q9BQE6 289 aaPredicted RBP15.42■□□□□ 0.06
SHMT2-230ENST00000557427 RBM19Q9Y4C8 960 aaKnown RBP15.42■□□□□ 0.06
SHMT2-230ENST00000557427 MAST2Q6P0Q8 1798 aa15.41■□□□□ 0.06
SHMT2-230ENST00000557427 LTBP2Q14767 1821 aa15.41■□□□□ 0.06
SHMT2-230ENST00000557427 DOCK2Q92608 1830 aa15.41■□□□□ 0.06
SHMT2-230ENST00000557427 IPO8O15397 1037 aaKnown RBP15.41■□□□□ 0.06
SHMT2-230ENST00000557427 CTNND1O60716 968 aaKnown RBP15.41■□□□□ 0.06
SHMT2-230ENST00000557427 PDE8BO95263 885 aa15.41■□□□□ 0.06
SHMT2-230ENST00000557427 UBTFL1P0CB47 393 aaPredicted RBP15.41■□□□□ 0.06
SHMT2-230ENST00000557427 PNMA3Q9UL41 463 aa15.41■□□□□ 0.06
SHMT2-230ENST00000557427 TNNQ9UQP3 1299 aa15.41■□□□□ 0.06
SHMT2-230ENST00000557427 DOCK1Q14185 1865 aa15.41■□□□□ 0.06
SHMT2-230ENST00000557427 DDTLA6NHG4 134 aaPredicted RBP15.4■□□□□ 0.06
SHMT2-230ENST00000557427 MS4A1P11836 297 aa15.4■□□□□ 0.06
SHMT2-230ENST00000557427 PRDX5P30044 214 aa15.4■□□□□ 0.06
SHMT2-230ENST00000557427 HOXD11P31277 338 aaPredicted RBP15.4■□□□□ 0.06
SHMT2-230ENST00000557427 GCLCP48506 637 aaPredicted RBP15.4■□□□□ 0.06
SHMT2-230ENST00000557427 RGS3P49796 1198 aa15.4■□□□□ 0.06
SHMT2-230ENST00000557427 CCL14Q16627 93 aa15.4■□□□□ 0.06
SHMT2-230ENST00000557427 METTL24Q5JXM2 366 aa15.4■□□□□ 0.06
SHMT2-230ENST00000557427 ARHGAP45Q92619 1136 aa15.4■□□□□ 0.06
SHMT2-230ENST00000557427 CLUAP1Q96AJ1 413 aa15.4■□□□□ 0.06
SHMT2-230ENST00000557427 FAM122AQ96E09 287 aa15.4■□□□□ 0.06
SHMT2-230ENST00000557427 SENP6Q9GZR1 1112 aaPredicted RBP15.4■□□□□ 0.06
SHMT2-230ENST00000557427 LRRFIP2Q9Y608 721 aaKnown RBP15.4■□□□□ 0.06
SHMT2-230ENST00000557427 XRCC5P13010 732 aaKnown RBP15.39■□□□□ 0.05
SHMT2-230ENST00000557427 FGFR2P21802 821 aa15.39■□□□□ 0.05
SHMT2-230ENST00000557427 SMAD3P84022 425 aaKnown RBP15.39■□□□□ 0.05
SHMT2-230ENST00000557427 CENPQQ7L2Z9 268 aaPredicted RBP15.39■□□□□ 0.05
SHMT2-230ENST00000557427 PROCA1Q8NCQ7 364 aaPredicted RBP15.39■□□□□ 0.05
SHMT2-230ENST00000557427 USP6NLQ92738 828 aa15.39■□□□□ 0.05
SHMT2-230ENST00000557427 IDI2Q9BXS1 227 aa15.39■□□□□ 0.05
SHMT2-230ENST00000557427 ASCC2Q9H1I8 757 aaPredicted RBP15.39■□□□□ 0.05
SHMT2-230ENST00000557427 MORF4L1Q9UBU8 362 aa15.39■□□□□ 0.05
SHMT2-230ENST00000557427 KIF16BQ96L93 1317 aa15.39■□□□□ 0.05
SHMT2-230ENST00000557427 LOC285556D6RIA3 1793 aa15.39■□□□□ 0.05
SHMT2-230ENST00000557427 RFX7Q2KHR2 1363 aa15.38■□□□□ 0.05
SHMT2-230ENST00000557427 TMEM265A0A087WTH1 108 aa15.38■□□□□ 0.05
SHMT2-230ENST00000557427 ATN1P54259 1190 aaPredicted RBP15.38■□□□□ 0.05
SHMT2-230ENST00000557427 SPP2Q13103 211 aa15.38■□□□□ 0.05
SHMT2-230ENST00000557427 MEIS3Q99687 375 aa15.38■□□□□ 0.05
SHMT2-230ENST00000557427 TXNRD2Q9NNW7 524 aa15.38■□□□□ 0.05
SHMT2-230ENST00000557427 DDX4Q9NQI0 724 aaKnown RBP15.38■□□□□ 0.05
SHMT2-230ENST00000557427 ENTPD3O75355 529 aa15.37■□□□□ 0.05
SHMT2-230ENST00000557427 TRIM27P14373 513 aa15.37■□□□□ 0.05
SHMT2-230ENST00000557427 RFX5P48382 616 aaPredicted RBP15.37■□□□□ 0.05
SHMT2-230ENST00000557427 HMGCS2P54868 508 aa15.37■□□□□ 0.05
SHMT2-230ENST00000557427 ZKSCAN2Q63HK3 967 aa15.37■□□□□ 0.05
SHMT2-230ENST00000557427 ATF7IPQ6VMQ6 1270 aa15.37■□□□□ 0.05
SHMT2-230ENST00000557427 WDR66Q8TBY9 1149 aa15.37■□□□□ 0.05
SHMT2-230ENST00000557427 NUDT12Q9BQG2 462 aa15.37■□□□□ 0.05
SHMT2-230ENST00000557427 SIL1Q9H173 461 aa15.37■□□□□ 0.05
SHMT2-230ENST00000557427 FRMPD3Q5JV73 1810 aa15.36■□□□□ 0.05
SHMT2-230ENST00000557427 EYA2O00167 538 aa15.36■□□□□ 0.05
SHMT2-230ENST00000557427 MAP3K12Q12852 859 aa15.36■□□□□ 0.05
SHMT2-230ENST00000557427 ZSCAN29Q8IWY8 852 aaPredicted RBP15.36■□□□□ 0.05
SHMT2-230ENST00000557427 HDAC5Q9UQL6 1122 aa15.36■□□□□ 0.05
SHMT2-230ENST00000557427 FAM196BA6NMK8 535 aa15.35■□□□□ 0.05
SHMT2-230ENST00000557427 ZKSCAN1P17029 563 aaPredicted RBP15.35■□□□□ 0.05
SHMT2-230ENST00000557427 RTP1P59025 263 aa15.35■□□□□ 0.05
SHMT2-230ENST00000557427 RRP1BQ14684 758 aaKnown RBP15.35■□□□□ 0.05
SHMT2-230ENST00000557427 GRIN2CQ14957 1233 aa15.35■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms