RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 MCMDC2Q4G0Z9 681 aa17.11■□□□□ 0.33
NUP54-216ENST00000514901 RASAL3Q86YV0 1011 aa17.11■□□□□ 0.33
NUP54-216ENST00000514901 CRACR2BQ8N4Y2 399 aaPredicted RBP17.11■□□□□ 0.33
NUP54-216ENST00000514901 JMYQ8N9B5 988 aa17.11■□□□□ 0.33
NUP54-216ENST00000514901 EHD4Q9H223 541 aa17.11■□□□□ 0.33
NUP54-216ENST00000514901 PATL2C9JE40 543 aaKnown RBP17.1■□□□□ 0.33
NUP54-216ENST00000514901 M0R2C6 588 aa17.1■□□□□ 0.33
NUP54-216ENST00000514901 CTNND1O60716 968 aaKnown RBP17.1■□□□□ 0.33
NUP54-216ENST00000514901 GSPT1P15170 499 aaKnown RBP17.1■□□□□ 0.33
NUP54-216ENST00000514901 VGLL4Q14135 290 aa17.1■□□□□ 0.33
NUP54-216ENST00000514901 NOL9Q5SY16 702 aaKnown RBP17.1■□□□□ 0.33
NUP54-216ENST00000514901 CLMNQ96JQ2 1002 aa17.1■□□□□ 0.33
NUP54-216ENST00000514901 NACAP1Q9BZK3 213 aa17.1■□□□□ 0.33
NUP54-216ENST00000514901 SERPINB13Q9UIV8 391 aa17.1■□□□□ 0.33
NUP54-216ENST00000514901 MYH1P12882 1939 aa17.09■□□□□ 0.33
NUP54-216ENST00000514901 GSG1L2A8MUP6 293 aa17.09■□□□□ 0.33
NUP54-216ENST00000514901 APPP05067 770 aa17.09■□□□□ 0.33
NUP54-216ENST00000514901 ZBTB48P10074 688 aaPredicted RBP17.09■□□□□ 0.33
NUP54-216ENST00000514901 INPP5BP32019 993 aa17.09■□□□□ 0.33
NUP54-216ENST00000514901 MFAP1P55081 439 aaKnown RBP17.09■□□□□ 0.33
NUP54-216ENST00000514901 SPRYD7Q5W111 196 aa17.09■□□□□ 0.33
NUP54-216ENST00000514901 ERO1BQ86YB8 467 aa17.09■□□□□ 0.33
NUP54-216ENST00000514901 ZKSCAN4Q969J2 545 aaPredicted RBP17.09■□□□□ 0.33
NUP54-216ENST00000514901 SEC62Q99442 399 aaKnown RBP17.09■□□□□ 0.33
NUP54-216ENST00000514901 ELP3Q9H9T3 547 aa17.09■□□□□ 0.33
NUP54-216ENST00000514901 DIAPH3Q9NSV4 1193 aa17.09■□□□□ 0.33
NUP54-216ENST00000514901 MAP2K1Q02750 393 aaPredicted RBP17.08■□□□□ 0.32
NUP54-216ENST00000514901 SBK1Q52WX2 424 aa17.08■□□□□ 0.32
NUP54-216ENST00000514901 WNK4Q96J92 1243 aa17.08■□□□□ 0.32
NUP54-216ENST00000514901 FAM227BQ96M60 508 aa17.08■□□□□ 0.32
NUP54-216ENST00000514901 PICK1Q9NRD5 415 aa17.08■□□□□ 0.32
NUP54-216ENST00000514901 GINM1Q9NU53 330 aa17.08■□□□□ 0.32
NUP54-216ENST00000514901 SNCAIPQ9Y6H5 919 aa17.08■□□□□ 0.32
NUP54-216ENST00000514901 SPDYE5A6NIY4 337 aa17.07■□□□□ 0.32
NUP54-216ENST00000514901 USP17L12C9JPN9 530 aa17.07■□□□□ 0.32
NUP54-216ENST00000514901 USP17L21D6R901 530 aa17.07■□□□□ 0.32
NUP54-216ENST00000514901 AOC2O75106 756 aa17.07■□□□□ 0.32
NUP54-216ENST00000514901 PLCD1P51178 756 aa17.07■□□□□ 0.32
NUP54-216ENST00000514901 INHBEP58166 350 aa17.07■□□□□ 0.32
NUP54-216ENST00000514901 PPATQ06203 517 aa17.07■□□□□ 0.32
NUP54-216ENST00000514901 NMIQ13287 307 aaPredicted RBP17.07■□□□□ 0.32
NUP54-216ENST00000514901 C12orf60Q5U649 245 aa17.07■□□□□ 0.32
NUP54-216ENST00000514901 SCYL3Q8IZE3 742 aa17.07■□□□□ 0.32
NUP54-216ENST00000514901 OPTNQ96CV9 577 aa17.07■□□□□ 0.32
NUP54-216ENST00000514901 ARPP21Q9UBL0 812 aaPredicted RBP17.07■□□□□ 0.32
NUP54-216ENST00000514901 SWAP70Q9UH65 585 aa17.07■□□□□ 0.32
NUP54-216ENST00000514901 A0A0D9SFI3 127 aa17.06■□□□□ 0.32
NUP54-216ENST00000514901 MANSC4A6NHS7 340 aaPredicted RBP17.06■□□□□ 0.32
NUP54-216ENST00000514901 CAP2P40123 477 aa17.06■□□□□ 0.32
NUP54-216ENST00000514901 KIF23Q02241 960 aaPredicted RBP17.06■□□□□ 0.32
NUP54-216ENST00000514901 TATDN1Q6P1N9 297 aa17.06■□□□□ 0.32
NUP54-216ENST00000514901 CTR9Q6PD62 1173 aa17.06■□□□□ 0.32
NUP54-216ENST00000514901 IFNL3Q8IZI9 196 aa17.06■□□□□ 0.32
NUP54-216ENST00000514901 TBC1D2Q9BYX2 928 aa17.06■□□□□ 0.32
NUP54-216ENST00000514901 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.06■□□□□ 0.32
NUP54-216ENST00000514901 PCNTO95613 3336 aa17.06■□□□□ 0.32
NUP54-216ENST00000514901 FAM196BA6NMK8 535 aa17.05■□□□□ 0.32
NUP54-216ENST00000514901 TDO2P48775 406 aa17.05■□□□□ 0.32
NUP54-216ENST00000514901 GABPAQ06546 454 aa17.05■□□□□ 0.32
NUP54-216ENST00000514901 SREBF2Q12772 1141 aa17.05■□□□□ 0.32
NUP54-216ENST00000514901 PPIL2Q13356 520 aa17.05■□□□□ 0.32
NUP54-216ENST00000514901 SLC4A8Q2Y0W8 1093 aa17.05■□□□□ 0.32
NUP54-216ENST00000514901 BMP2KLQ5H9B9 411 aa17.05■□□□□ 0.32
NUP54-216ENST00000514901 CWC27Q6UX04 472 aaKnown RBP17.05■□□□□ 0.32
NUP54-216ENST00000514901 RUFY2Q8WXA3 655 aa17.05■□□□□ 0.32
NUP54-216ENST00000514901 DNAJC18Q9H819 358 aa17.05■□□□□ 0.32
NUP54-216ENST00000514901 NAV1Q8NEY1 1877 aa17.05■□□□□ 0.32
NUP54-216ENST00000514901 CCDC171Q6TFL3 1326 aa17.04■□□□□ 0.32
NUP54-216ENST00000514901 ASNSP08243 561 aa17.04■□□□□ 0.32
NUP54-216ENST00000514901 SLURP2P0DP57 97 aa17.04■□□□□ 0.32
NUP54-216ENST00000514901 PTPRAP18433 802 aa17.04■□□□□ 0.32
NUP54-216ENST00000514901 TM4SF4P48230 202 aa17.04■□□□□ 0.32
NUP54-216ENST00000514901 GTF2A2P52657 109 aa17.04■□□□□ 0.32
NUP54-216ENST00000514901 ALX1Q15699 326 aa17.04■□□□□ 0.32
NUP54-216ENST00000514901 CERKLQ49MI3 558 aaPredicted RBP17.04■□□□□ 0.32
NUP54-216ENST00000514901 CCDC129Q6ZRS4 1044 aa17.04■□□□□ 0.32
NUP54-216ENST00000514901 BEGAINQ9BUH8 593 aa17.04■□□□□ 0.32
NUP54-216ENST00000514901 NAPBQ9H115 298 aa17.04■□□□□ 0.32
NUP54-216ENST00000514901 BAZ2AQ9UIF9 1905 aaKnown RBP17.04■□□□□ 0.32
NUP54-216ENST00000514901 OTOFQ9HC10 1997 aa17.03■□□□□ 0.32
NUP54-216ENST00000514901 CXCL11O14625 94 aa17.03■□□□□ 0.32
NUP54-216ENST00000514901 CYP2D6P10635 497 aa17.03■□□□□ 0.32
NUP54-216ENST00000514901 CHMLP26374 656 aa17.03■□□□□ 0.32
NUP54-216ENST00000514901 GJA5P36382 358 aa17.03■□□□□ 0.32
NUP54-216ENST00000514901 MKRN3Q13064 507 aaKnown RBP17.03■□□□□ 0.32
NUP54-216ENST00000514901 OTUD5Q96G74 571 aa17.03■□□□□ 0.32
NUP54-216ENST00000514901 ZIC5Q96T25 663 aa17.03■□□□□ 0.32
NUP54-216ENST00000514901 ZNF287Q9HBT7 754 aa17.03■□□□□ 0.32
NUP54-216ENST00000514901 EPB41L4AQ9HCS5 686 aaPredicted RBP17.03■□□□□ 0.32
NUP54-216ENST00000514901 RAD50Q92878 1312 aa17.02■□□□□ 0.32
NUP54-216ENST00000514901 MINDY4BA8MYZ0 360 aa17.02■□□□□ 0.32
NUP54-216ENST00000514901 CA12O43570 354 aa17.02■□□□□ 0.32
NUP54-216ENST00000514901 SLC3A2P08195 630 aaKnown RBP17.02■□□□□ 0.32
NUP54-216ENST00000514901 HSPD1P10809 573 aaKnown RBP17.02■□□□□ 0.32
NUP54-216ENST00000514901 SHMT1P34896 483 aa17.02■□□□□ 0.32
NUP54-216ENST00000514901 SNAPC2Q13487 334 aa17.02■□□□□ 0.32
NUP54-216ENST00000514901 C16orf86Q6ZW13 317 aa17.02■□□□□ 0.32
NUP54-216ENST00000514901 ZNF589Q86UQ0 364 aaPredicted RBP17.02■□□□□ 0.32
NUP54-216ENST00000514901 CNKSR2Q8WXI2 1034 aa17.02■□□□□ 0.32
NUP54-216ENST00000514901 CCDC17Q96LX7 622 aa17.02■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 75.2 ms