RNA–Protein interactions for RNA: ENST00000474665.1

LIMD1-204, Transcript of LIM domains containing 1, humanhuman

TSL 3

Gene LIMD1, Length 513 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-204ENST00000474665 LDHCP07864 332 aa8.45□□□□□ -1.06
LIMD1-204ENST00000474665 HOXD11P31277 338 aaPredicted RBP8.45□□□□□ -1.06
LIMD1-204ENST00000474665 RGS3P49796 1198 aa8.45□□□□□ -1.06
LIMD1-204ENST00000474665 GSTO1P78417 241 aa8.45□□□□□ -1.06
LIMD1-204ENST00000474665 TTLL12Q14166 644 aaPredicted RBP8.45□□□□□ -1.06
LIMD1-204ENST00000474665 UBE3CQ15386 1083 aa8.45□□□□□ -1.06
LIMD1-204ENST00000474665 SLC9C1Q4G0N8 1177 aa8.45□□□□□ -1.06
LIMD1-204ENST00000474665 ZMYM1Q5SVZ6 1142 aa8.45□□□□□ -1.06
LIMD1-204ENST00000474665 FKBP1CQ5VVH2 108 aa8.45□□□□□ -1.06
LIMD1-204ENST00000474665 SH3BP5LQ7L8J4 393 aa8.45□□□□□ -1.06
LIMD1-204ENST00000474665 NBPF11Q86T75 865 aa8.45□□□□□ -1.06
LIMD1-204ENST00000474665 EVI5LQ96CN4 794 aa8.45□□□□□ -1.06
LIMD1-204ENST00000474665 IDI2Q9BXS1 227 aa8.45□□□□□ -1.06
LIMD1-204ENST00000474665 IL25Q9H293 177 aa8.45□□□□□ -1.06
LIMD1-204ENST00000474665 USP40Q9NVE5 1235 aa8.45□□□□□ -1.06
LIMD1-204ENST00000474665 GTF3C3Q9Y5Q9 886 aa8.45□□□□□ -1.06
LIMD1-204ENST00000474665 NR2E3Q9Y5X4 410 aa8.45□□□□□ -1.06
LIMD1-204ENST00000474665 PTCH2Q9Y6C5 1203 aa8.45□□□□□ -1.06
LIMD1-204ENST00000474665 DDX60LQ5H9U9 1706 aaKnown RBP8.44□□□□□ -1.06
LIMD1-204ENST00000474665 A0A0D9SFI3 127 aa8.44□□□□□ -1.06
LIMD1-204ENST00000474665 TCP10L2B9ZVM9 353 aa8.44□□□□□ -1.06
LIMD1-204ENST00000474665 M0R2C6 588 aa8.44□□□□□ -1.06
LIMD1-204ENST00000474665 PRKAB2O43741 272 aa8.44□□□□□ -1.06
LIMD1-204ENST00000474665 ALDH1A1P00352 501 aa8.44□□□□□ -1.06
LIMD1-204ENST00000474665 SLURP2P0DP57 97 aa8.44□□□□□ -1.06
LIMD1-204ENST00000474665 EVX2Q03828 476 aa8.44□□□□□ -1.06
LIMD1-204ENST00000474665 RASA3Q14644 834 aa8.44□□□□□ -1.06
LIMD1-204ENST00000474665 GPR153Q6NV75 609 aa8.44□□□□□ -1.06
LIMD1-204ENST00000474665 IFNL1Q8IU54 200 aa8.44□□□□□ -1.06
LIMD1-204ENST00000474665 LCORLQ8N3X6 602 aa8.44□□□□□ -1.06
LIMD1-204ENST00000474665 SH3TC2Q8TF17 1288 aa8.44□□□□□ -1.06
LIMD1-204ENST00000474665 SHISA4Q96DD7 197 aa8.44□□□□□ -1.06
LIMD1-204ENST00000474665 FAM227BQ96M60 508 aa8.44□□□□□ -1.06
LIMD1-204ENST00000474665 FSD1Q9BTV5 496 aa8.44□□□□□ -1.06
LIMD1-204ENST00000474665 TMEM39BQ9GZU3 492 aa8.44□□□□□ -1.06
LIMD1-204ENST00000474665 DEFB129Q9H1M3 183 aa8.44□□□□□ -1.06
LIMD1-204ENST00000474665 ARMT1Q9H993 441 aa8.44□□□□□ -1.06
LIMD1-204ENST00000474665 VEZTQ9HBM0 779 aa8.44□□□□□ -1.06
LIMD1-204ENST00000474665 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.44□□□□□ -1.06
LIMD1-204ENST00000474665 TRIM6-TRIM34B2RNG4 842 aa8.43□□□□□ -1.06
LIMD1-204ENST00000474665 SMIM22K7EJ46 135 aa8.43□□□□□ -1.06
LIMD1-204ENST00000474665 NPM3O75607 178 aaKnown RBP8.43□□□□□ -1.06
LIMD1-204ENST00000474665 MBD4O95243 580 aa8.43□□□□□ -1.06
LIMD1-204ENST00000474665 TCP10Q12799 353 aa8.43□□□□□ -1.06
LIMD1-204ENST00000474665 NMIQ13287 307 aaPredicted RBP8.43□□□□□ -1.06
LIMD1-204ENST00000474665 BMP2KLQ5H9B9 411 aa8.43□□□□□ -1.06
LIMD1-204ENST00000474665 NBPF12Q5TAG4 269 aaPredicted RBP8.43□□□□□ -1.06
LIMD1-204ENST00000474665 TMED8Q6PL24 325 aaPredicted RBP8.43□□□□□ -1.06
LIMD1-204ENST00000474665 SLF2Q8IX21 1173 aa8.43□□□□□ -1.06
LIMD1-204ENST00000474665 APPBP2Q92624 585 aa8.43□□□□□ -1.06
LIMD1-204ENST00000474665 RILPL2Q969X0 211 aa8.43□□□□□ -1.06
LIMD1-204ENST00000474665 STRBPQ96SI9 672 aaKnown RBP8.43□□□□□ -1.06
LIMD1-204ENST00000474665 DDX24Q9GZR7 859 aaKnown RBP eCLIP8.43□□□□□ -1.066e-7■■□□□ 12
LIMD1-204ENST00000474665 ATRNL1Q5VV63 1379 aa8.43□□□□□ -1.06
LIMD1-204ENST00000474665 VCANP13611 3396 aa8.43□□□□□ -1.06
LIMD1-204ENST00000474665 LAMA3Q16787 3333 aa8.42□□□□□ -1.06
LIMD1-204ENST00000474665 MAGEB6P1A0A0J9YX57 407 aa8.42□□□□□ -1.06
LIMD1-204ENST00000474665 DDTLA6NHG4 134 aaPredicted RBP8.42□□□□□ -1.06
LIMD1-204ENST00000474665 IGF2BP3O00425 579 aaKnown RBP eCLIP8.42□□□□□ -1.06
LIMD1-204ENST00000474665 MYO1BO43795 1136 aa8.42□□□□□ -1.06
LIMD1-204ENST00000474665 CHMLP26374 656 aa8.42□□□□□ -1.06
LIMD1-204ENST00000474665 SP3Q02447 781 aa8.42□□□□□ -1.06
LIMD1-204ENST00000474665 PRKG1Q13976 671 aa8.42□□□□□ -1.06
LIMD1-204ENST00000474665 SPRYD7Q5W111 196 aa8.42□□□□□ -1.06
LIMD1-204ENST00000474665 CCDC129Q6ZRS4 1044 aa8.42□□□□□ -1.06
LIMD1-204ENST00000474665 ZNF589Q86UQ0 364 aaPredicted RBP8.42□□□□□ -1.06
LIMD1-204ENST00000474665 FAM83AQ86UY5 434 aa8.42□□□□□ -1.06
LIMD1-204ENST00000474665 TICAM2Q86XR7 235 aa8.42□□□□□ -1.06
LIMD1-204ENST00000474665 APOBEC3FQ8IUX4 373 aaKnown RBP8.42□□□□□ -1.06
LIMD1-204ENST00000474665 TEX11Q8IYF3 940 aa8.42□□□□□ -1.06
LIMD1-204ENST00000474665 TGFBRAP1Q8WUH2 860 aa8.42□□□□□ -1.06
LIMD1-204ENST00000474665 SDR42E1Q8WUS8 393 aa8.42□□□□□ -1.06
LIMD1-204ENST00000474665 HTATIP2Q9BUP3 242 aa8.42□□□□□ -1.06
LIMD1-204ENST00000474665 FZD1Q9UP38 647 aa8.42□□□□□ -1.06
LIMD1-204ENST00000474665 FLT1P17948 1338 aa8.42□□□□□ -1.06
LIMD1-204ENST00000474665 NAV1Q8NEY1 1877 aa8.42□□□□□ -1.06
LIMD1-204ENST00000474665 SPTBN5Q9NRC6 3674 aaKnown RBP8.42□□□□□ -1.06
LIMD1-204ENST00000474665 OTOFQ9HC10 1997 aa8.41□□□□□ -1.06
LIMD1-204ENST00000474665 RPAP1Q9BWH6 1393 aaPredicted RBP8.41□□□□□ -1.06
LIMD1-204ENST00000474665 RPTORQ8N122 1335 aa8.41□□□□□ -1.06
LIMD1-204ENST00000474665 GSG1L2A8MUP6 293 aa8.41□□□□□ -1.06
LIMD1-204ENST00000474665 GPAA1O43292 621 aa8.41□□□□□ -1.06
LIMD1-204ENST00000474665 ENTPD3O75355 529 aa8.41□□□□□ -1.06
LIMD1-204ENST00000474665 BAG3O95817 575 aa8.41□□□□□ -1.06
LIMD1-204ENST00000474665 ZFYP08048 801 aaPredicted RBP8.41□□□□□ -1.06
LIMD1-204ENST00000474665 CRHR2Q13324 411 aa8.41□□□□□ -1.06
LIMD1-204ENST00000474665 PICALMQ13492 652 aa8.41□□□□□ -1.06
LIMD1-204ENST00000474665 MTFR1Q15390 333 aa8.41□□□□□ -1.06
LIMD1-204ENST00000474665 VPS53Q5VIR6 699 aa8.41□□□□□ -1.06
LIMD1-204ENST00000474665 ZSCAN25Q6NSZ9 544 aa8.41□□□□□ -1.06
LIMD1-204ENST00000474665 MAPKAPK5Q8IW41 473 aa8.41□□□□□ -1.06
LIMD1-204ENST00000474665 FAM151AQ8WW52 585 aa8.41□□□□□ -1.06
LIMD1-204ENST00000474665 OSBPL5Q9H0X9 879 aaPredicted RBP8.41□□□□□ -1.06
LIMD1-204ENST00000474665 EPB41L4AQ9HCS5 686 aaPredicted RBP8.41□□□□□ -1.06
LIMD1-204ENST00000474665 DCP1AQ9NPI6 582 aaPredicted RBP8.41□□□□□ -1.06
LIMD1-204ENST00000474665 COL2A1P02458 1487 aaPredicted RBP8.4□□□□□ -1.06
LIMD1-204ENST00000474665 ECM2O94769 699 aaPredicted RBP8.4□□□□□ -1.06
LIMD1-204ENST00000474665 CYP2D6P10635 497 aa8.4□□□□□ -1.06
LIMD1-204ENST00000474665 PLCG2P16885 1265 aa8.4□□□□□ -1.06
LIMD1-204ENST00000474665 MAP3K10Q02779 954 aa8.4□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 235.1 ms