RNA–Protein interactions for RNA: ENST00000461819.5

CCDC28B-203, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 780 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-203ENST00000461819 MCM9Q9NXL9 1143 aa27.45■■□□□ 1.98
CCDC28B-203ENST00000461819 HERC5Q9UII4 1024 aaKnown RBP27.45■■□□□ 1.98
CCDC28B-203ENST00000461819 MYH8P13535 1937 aa27.44■■□□□ 1.98
CCDC28B-203ENST00000461819 TBC1D12O60347 775 aa27.44■■□□□ 1.98
CCDC28B-203ENST00000461819 POLR3DP05423 398 aaPredicted RBP27.44■■□□□ 1.98
CCDC28B-203ENST00000461819 SLURP2P0DP57 97 aa27.44■■□□□ 1.98
CCDC28B-203ENST00000461819 INPP5BP32019 993 aa27.44■■□□□ 1.98
CCDC28B-203ENST00000461819 STRBPQ96SI9 672 aaKnown RBP27.44■■□□□ 1.98
CCDC28B-203ENST00000461819 SEC62Q99442 399 aaKnown RBP27.44■■□□□ 1.98
CCDC28B-203ENST00000461819 DCP1AQ9NPI6 582 aaPredicted RBP27.44■■□□□ 1.98
CCDC28B-203ENST00000461819 ZNF112Q9UJU3 913 aa27.44■■□□□ 1.98
CCDC28B-203ENST00000461819 LAMB1P07942 1786 aa27.44■■□□□ 1.98
CCDC28B-203ENST00000461819 PCNTO95613 3336 aa27.44■■□□□ 1.98
CCDC28B-203ENST00000461819 MAP3K10Q02779 954 aa27.43■■□□□ 1.98
CCDC28B-203ENST00000461819 TTC6Q86TZ1 520 aa27.43■■□□□ 1.98
CCDC28B-203ENST00000461819 TICAM2Q86XR7 235 aa27.43■■□□□ 1.98
CCDC28B-203ENST00000461819 WNK4Q96J92 1243 aa27.43■■□□□ 1.98
CCDC28B-203ENST00000461819 PPP4R2Q9NY27 417 aa27.43■■□□□ 1.98
CCDC28B-203ENST00000461819 SNCAIPQ9Y6H5 919 aa27.43■■□□□ 1.98
CCDC28B-203ENST00000461819 GNAT2P19087 354 aa27.42■■□□□ 1.98
CCDC28B-203ENST00000461819 SPRYD7Q5W111 196 aa27.42■■□□□ 1.98
CCDC28B-203ENST00000461819 FOXP4Q8IVH2 680 aaPredicted RBP27.42■■□□□ 1.98
CCDC28B-203ENST00000461819 OPTNQ96CV9 577 aa27.42■■□□□ 1.98
CCDC28B-203ENST00000461819 PHF20L1A8MW92 1017 aa27.41■■□□□ 1.98
CCDC28B-203ENST00000461819 ZBTB48P10074 688 aaPredicted RBP27.41■■□□□ 1.98
CCDC28B-203ENST00000461819 GSPT1P15170 499 aaKnown RBP27.41■■□□□ 1.98
CCDC28B-203ENST00000461819 KIF23Q02241 960 aaPredicted RBP27.41■■□□□ 1.98
CCDC28B-203ENST00000461819 AMOTL1Q8IY63 956 aa27.41■■□□□ 1.98
CCDC28B-203ENST00000461819 ZIC5Q96T25 663 aa27.41■■□□□ 1.98
CCDC28B-203ENST00000461819 MAP2K1Q02750 393 aaPredicted RBP27.4■■□□□ 1.98
CCDC28B-203ENST00000461819 NOL9Q5SY16 702 aaKnown RBP27.4■■□□□ 1.98
CCDC28B-203ENST00000461819 OTUD5Q96G74 571 aa27.4■■□□□ 1.98
CCDC28B-203ENST00000461819 SERPINB13Q9UIV8 391 aa27.4■■□□□ 1.98
CCDC28B-203ENST00000461819 APPP05067 770 aa27.39■■□□□ 1.98
CCDC28B-203ENST00000461819 CNKSR2Q8WXI2 1034 aa27.39■■□□□ 1.98
CCDC28B-203ENST00000461819 FAM227BQ96M60 508 aa27.39■■□□□ 1.98
CCDC28B-203ENST00000461819 EHD4Q9H223 541 aa27.39■■□□□ 1.98
CCDC28B-203ENST00000461819 PICK1Q9NRD5 415 aa27.39■■□□□ 1.98
CCDC28B-203ENST00000461819 HELLSQ9NRZ9 838 aa27.39■■□□□ 1.98
CCDC28B-203ENST00000461819 DIAPH3Q9NSV4 1193 aa27.39■■□□□ 1.98
CCDC28B-203ENST00000461819 SPDYE5A6NIY4 337 aa27.38■■□□□ 1.97
CCDC28B-203ENST00000461819 CTNND1O60716 968 aaKnown RBP27.38■■□□□ 1.97
CCDC28B-203ENST00000461819 SDSP20132 328 aa27.38■■□□□ 1.97
CCDC28B-203ENST00000461819 PLCD1P51178 756 aa27.38■■□□□ 1.97
CCDC28B-203ENST00000461819 NMIQ13287 307 aaPredicted RBP27.38■■□□□ 1.97
CCDC28B-203ENST00000461819 CCDC129Q6ZRS4 1044 aa27.38■■□□□ 1.97
CCDC28B-203ENST00000461819 METTL16Q86W50 562 aaKnown RBP27.38■■□□□ 1.97
CCDC28B-203ENST00000461819 ERO1BQ86YB8 467 aa27.38■■□□□ 1.97
CCDC28B-203ENST00000461819 SCYL3Q8IZE3 742 aa27.38■■□□□ 1.97
CCDC28B-203ENST00000461819 DNAJC18Q9H819 358 aa27.38■■□□□ 1.97
CCDC28B-203ENST00000461819 A0A0D9SFI3 127 aa27.37■■□□□ 1.97
CCDC28B-203ENST00000461819 GSG1L2A8MUP6 293 aa27.37■■□□□ 1.97
CCDC28B-203ENST00000461819 HIP1O00291 1037 aa27.37■■□□□ 1.97
CCDC28B-203ENST00000461819 GJA5P36382 358 aa27.37■■□□□ 1.97
CCDC28B-203ENST00000461819 BEGAINQ9BUH8 593 aa27.37■■□□□ 1.97
CCDC28B-203ENST00000461819 CYP2D6P10635 497 aa27.36■■□□□ 1.97
CCDC28B-203ENST00000461819 TDO2P48775 406 aa27.36■■□□□ 1.97
CCDC28B-203ENST00000461819 MCMDC2Q4G0Z9 681 aa27.36■■□□□ 1.97
CCDC28B-203ENST00000461819 GIMAP6Q6P9H5 292 aa27.36■■□□□ 1.97
CCDC28B-203ENST00000461819 SKAP1Q86WV1 359 aa27.36■■□□□ 1.97
CCDC28B-203ENST00000461819 REM2Q8IYK8 340 aaPredicted RBP27.36■■□□□ 1.97
CCDC28B-203ENST00000461819 NACAP1Q9BZK3 213 aa27.36■■□□□ 1.97
CCDC28B-203ENST00000461819 ARPP21Q9UBL0 812 aaPredicted RBP27.36■■□□□ 1.97
CCDC28B-203ENST00000461819 PHIPQ8WWQ0 1821 aa27.36■■□□□ 1.97
CCDC28B-203ENST00000461819 USP17L12C9JPN9 530 aa27.35■■□□□ 1.97
CCDC28B-203ENST00000461819 USP17L21D6R901 530 aa27.35■■□□□ 1.97
CCDC28B-203ENST00000461819 SREBF2Q12772 1141 aa27.35■■□□□ 1.97
CCDC28B-203ENST00000461819 MANSC4A6NHS7 340 aaPredicted RBP27.34■■□□□ 1.97
CCDC28B-203ENST00000461819 PATL2C9JE40 543 aaKnown RBP27.34■■□□□ 1.97
CCDC28B-203ENST00000461819 PPATQ06203 517 aa27.34■■□□□ 1.97
CCDC28B-203ENST00000461819 PPIL2Q13356 520 aa27.34■■□□□ 1.97
CCDC28B-203ENST00000461819 EPB41L4AQ9HCS5 686 aaPredicted RBP27.34■■□□□ 1.97
CCDC28B-203ENST00000461819 CYP2D7A0A087X1C5 515 aa27.33■■□□□ 1.97
CCDC28B-203ENST00000461819 HSPA1AP0DMV8 641 aaKnown RBP27.33■■□□□ 1.97
CCDC28B-203ENST00000461819 HSPA1BP0DMV9 641 aaKnown RBP27.33■■□□□ 1.97
CCDC28B-203ENST00000461819 CAP2P40123 477 aa27.33■■□□□ 1.97
CCDC28B-203ENST00000461819 EVX2Q03828 476 aa27.33■■□□□ 1.97
CCDC28B-203ENST00000461819 CTR9Q6PD62 1173 aa27.33■■□□□ 1.97
CCDC28B-203ENST00000461819 CWC27Q6UX04 472 aaKnown RBP27.33■■□□□ 1.97
CCDC28B-203ENST00000461819 WBP1LQ9NX94 342 aa27.33■■□□□ 1.97
CCDC28B-203ENST00000461819 GDF11O95390 407 aa27.32■■□□□ 1.96
CCDC28B-203ENST00000461819 PTPRAP18433 802 aa27.32■■□□□ 1.96
CCDC28B-203ENST00000461819 MFAP1P55081 439 aaKnown RBP27.32■■□□□ 1.96
CCDC28B-203ENST00000461819 RRP1BQ14684 758 aaKnown RBP27.32■■□□□ 1.96
CCDC28B-203ENST00000461819 C12orf60Q5U649 245 aa27.32■■□□□ 1.96
CCDC28B-203ENST00000461819 IFNL3Q8IZI9 196 aa27.32■■□□□ 1.96
CCDC28B-203ENST00000461819 NAPBQ9H115 298 aa27.32■■□□□ 1.96
CCDC28B-203ENST00000461819 IRF6O14896 467 aa27.31■■□□□ 1.96
CCDC28B-203ENST00000461819 FRMD4AQ9P2Q2 1039 aaPredicted RBP27.31■■□□□ 1.96
CCDC28B-203ENST00000461819 SWAP70Q9UH65 585 aa27.31■■□□□ 1.96
CCDC28B-203ENST00000461819 CCDC171Q6TFL3 1326 aa27.31■■□□□ 1.96
CCDC28B-203ENST00000461819 PTPRFP10586 1907 aa27.31■■□□□ 1.96
CCDC28B-203ENST00000461819 MINDY4BA8MYZ0 360 aa27.3■■□□□ 1.96
CCDC28B-203ENST00000461819 GTF2A2P52657 109 aa27.3■■□□□ 1.96
CCDC28B-203ENST00000461819 GABPAQ06546 454 aa27.3■■□□□ 1.96
CCDC28B-203ENST00000461819 SBK1Q52WX2 424 aa27.3■■□□□ 1.96
CCDC28B-203ENST00000461819 TATDN1Q6P1N9 297 aa27.3■■□□□ 1.96
CCDC28B-203ENST00000461819 ZNF589Q86UQ0 364 aaPredicted RBP27.3■■□□□ 1.96
CCDC28B-203ENST00000461819 DYNLL2Q96FJ2 89 aa27.3■■□□□ 1.96
CCDC28B-203ENST00000461819 ZHX2Q9Y6X8 837 aa27.3■■□□□ 1.96
Retrieved 100 of 20,778 RNA–protein pairs in 80.8 ms