RNA–Protein interactions for RNA: ENST00000330188.13

TPM3-206, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 2,108 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-206ENST00000330188 PTF1AQ7RTS3 328 aa16.84■□□□□ 0.29
TPM3-206ENST00000330188 TRIM22Q8IYM9 498 aa16.84■□□□□ 0.29
TPM3-206ENST00000330188 ZNF384Q8TF68 577 aa16.84■□□□□ 0.29
TPM3-206ENST00000330188 BTAF1O14981 1849 aa16.83■□□□□ 0.29
TPM3-206ENST00000330188 MYH6P13533 1939 aa16.83■□□□□ 0.29
TPM3-206ENST00000330188 SYKP43405 635 aa16.83■□□□□ 0.28
TPM3-206ENST00000330188 NLRP12P59046 1061 aa16.83■□□□□ 0.28
TPM3-206ENST00000330188 DYNLL1P63167 89 aaKnown RBP16.83■□□□□ 0.28
TPM3-206ENST00000330188 RBM6P78332 1123 aaKnown RBP16.83■□□□□ 0.28
TPM3-206ENST00000330188 CRACR2BQ8N4Y2 399 aaPredicted RBP16.83■□□□□ 0.28
TPM3-206ENST00000330188 CACTINQ8WUQ7 758 aaKnown RBP16.83■□□□□ 0.28
TPM3-206ENST00000330188 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.83■□□□□ 0.28
TPM3-206ENST00000330188 DLEC1Q9Y238 1755 aa16.83■□□□□ 0.28
TPM3-206ENST00000330188 ZRSR1Q15695 479 aaKnown RBP16.82■□□□□ 0.28
TPM3-206ENST00000330188 VPS72Q15906 364 aa16.82■□□□□ 0.28
TPM3-206ENST00000330188 RESP18Q5W5W9 173 aa16.82■□□□□ 0.28
TPM3-206ENST00000330188 FBXO33Q7Z6M2 555 aa16.82■□□□□ 0.28
TPM3-206ENST00000330188 NOSTRINQ8IVI9 506 aa16.82■□□□□ 0.28
TPM3-206ENST00000330188 ESR2Q92731 530 aa16.82■□□□□ 0.28
TPM3-206ENST00000330188 UBAC1Q9BSL1 405 aa16.82■□□□□ 0.28
TPM3-206ENST00000330188 SRP68Q9UHB9 627 aaKnown RBP16.82■□□□□ 0.28
TPM3-206ENST00000330188 NARFQ9UHQ1 456 aa16.82■□□□□ 0.28
TPM3-206ENST00000330188 TNKSO95271 1327 aa16.82■□□□□ 0.28
TPM3-206ENST00000330188 CCDC196A0A1B0GTZ2 297 aa16.82■□□□□ 0.28
TPM3-206ENST00000330188 BTBD18B2RXH4 712 aa16.82■□□□□ 0.28
TPM3-206ENST00000330188 DEXIO95424 95 aa16.82■□□□□ 0.28
TPM3-206ENST00000330188 KLRK1P26718 216 aa16.82■□□□□ 0.28
TPM3-206ENST00000330188 HSP90AA2PQ14568 343 aaPredicted RBP16.82■□□□□ 0.28
TPM3-206ENST00000330188 RC3H1Q5TC82 1133 aaKnown RBP16.82■□□□□ 0.28
TPM3-206ENST00000330188 DIS3L2Q8IYB7 885 aaKnown RBP16.82■□□□□ 0.28
TPM3-206ENST00000330188 FANCBQ8NB91 859 aa16.82■□□□□ 0.28
TPM3-206ENST00000330188 CLIC6Q96NY7 704 aa16.82■□□□□ 0.28
TPM3-206ENST00000330188 BRIP1Q9BX63 1249 aa16.82■□□□□ 0.28
TPM3-206ENST00000330188 NYXQ9GZU5 481 aa16.82■□□□□ 0.28
TPM3-206ENST00000330188 KCNJ14Q9UNX9 436 aa16.82■□□□□ 0.28
TPM3-206ENST00000330188 BIN1O00499 593 aa16.81■□□□□ 0.28
TPM3-206ENST00000330188 CUTAO60888 179 aa16.81■□□□□ 0.28
TPM3-206ENST00000330188 RPS6KA4O75676 772 aa16.81■□□□□ 0.28
TPM3-206ENST00000330188 CMTR1Q8N1G2 835 aaKnown RBP16.81■□□□□ 0.28
TPM3-206ENST00000330188 NUP133Q8WUM0 1156 aa16.81■□□□□ 0.28
TPM3-206ENST00000330188 SEMA3EO15041 775 aa16.81■□□□□ 0.28
TPM3-206ENST00000330188 RPS8P62241 208 aaKnown RBP16.81■□□□□ 0.28
TPM3-206ENST00000330188 SAFBQ15424 915 aaKnown RBP eCLIP16.81■□□□□ 0.28
TPM3-206ENST00000330188 CCDC82Q8N4S0 544 aa16.81■□□□□ 0.28
TPM3-206ENST00000330188 FOXP1Q9H334 677 aaPredicted RBP16.81■□□□□ 0.28
TPM3-206ENST00000330188 CYP2D7A0A087X1C5 515 aa16.8■□□□□ 0.28
TPM3-206ENST00000330188 TOB1P50616 345 aaPredicted RBP16.8■□□□□ 0.28
TPM3-206ENST00000330188 C8orf37Q96NL8 207 aa16.8■□□□□ 0.28
TPM3-206ENST00000330188 NLRP3Q96P20 1036 aa16.8■□□□□ 0.28
TPM3-206ENST00000330188 SETDB2Q96T68 719 aa16.8■□□□□ 0.28
TPM3-206ENST00000330188 TUBE1Q9UJT0 475 aa16.8■□□□□ 0.28
TPM3-206ENST00000330188 LAMB1P07942 1786 aa16.8■□□□□ 0.28
TPM3-206ENST00000330188 MAST2Q6P0Q8 1798 aa16.8■□□□□ 0.28
TPM3-206ENST00000330188 RBM10P98175 930 aaKnown RBP16.79■□□□□ 0.28
TPM3-206ENST00000330188 LRRC8AQ8IWT6 810 aa16.79■□□□□ 0.28
TPM3-206ENST00000330188 ENAHQ8N8S7 591 aaPredicted RBP16.79■□□□□ 0.28
TPM3-206ENST00000330188 NSUN4Q96CB9 384 aaKnown RBP16.79■□□□□ 0.28
TPM3-206ENST00000330188 NHSQ6T4R5 1651 aa16.79■□□□□ 0.28
TPM3-206ENST00000330188 PDS5AQ29RF7 1337 aaKnown RBP16.79■□□□□ 0.28
TPM3-206ENST00000330188 TOM1O60784 492 aa16.79■□□□□ 0.28
TPM3-206ENST00000330188 GTF2F1P35269 517 aaKnown RBP eCLIP16.79■□□□□ 0.28
TPM3-206ENST00000330188 NCAPHQ15003 741 aa16.79■□□□□ 0.28
TPM3-206ENST00000330188 NBPF5PQ86XG9 351 aaPredicted RBP16.79■□□□□ 0.28
TPM3-206ENST00000330188 ZSCAN10Q96SZ4 725 aaPredicted RBP16.79■□□□□ 0.28
TPM3-206ENST00000330188 RNF26Q9BY78 433 aaPredicted RBP16.79■□□□□ 0.28
TPM3-206ENST00000330188 GNPATO15228 680 aa16.78■□□□□ 0.28
TPM3-206ENST00000330188 FGRP09769 529 aa16.78■□□□□ 0.28
TPM3-206ENST00000330188 ARID5BQ14865 1188 aa16.78■□□□□ 0.28
TPM3-206ENST00000330188 PPP2R5BQ15173 497 aa16.78■□□□□ 0.28
TPM3-206ENST00000330188 CTR9Q6PD62 1173 aa16.78■□□□□ 0.28
TPM3-206ENST00000330188 KRI1Q8N9T8 703 aaKnown RBP16.78■□□□□ 0.28
TPM3-206ENST00000330188 NGLY1Q96IV0 654 aa16.78■□□□□ 0.28
TPM3-206ENST00000330188 CCDC88AQ3V6T2 1871 aa16.78■□□□□ 0.28
TPM3-206ENST00000330188 NEMFO60524 1076 aa16.78■□□□□ 0.28
TPM3-206ENST00000330188 MECOMQ03112 1051 aa16.78■□□□□ 0.28
TPM3-206ENST00000330188 NR5A1Q13285 461 aa16.78■□□□□ 0.28
TPM3-206ENST00000330188 ANKRD2Q9GZV1 360 aa16.78■□□□□ 0.28
TPM3-206ENST00000330188 TFCP2L1Q9NZI6 479 aa16.78■□□□□ 0.28
TPM3-206ENST00000330188 TAF1LQ8IZX4 1826 aa16.77■□□□□ 0.28
TPM3-206ENST00000330188 ZPR1O75312 459 aa16.77■□□□□ 0.28
TPM3-206ENST00000330188 PCP11498 1178 aaKnown RBP16.77■□□□□ 0.28
TPM3-206ENST00000330188 HIBADHP31937 336 aaKnown RBP16.77■□□□□ 0.28
TPM3-206ENST00000330188 PNOCQ13519 176 aa16.77■□□□□ 0.28
TPM3-206ENST00000330188 RILPL1Q5EBL4 403 aa16.77■□□□□ 0.28
TPM3-206ENST00000330188 CCDC24Q8N4L8 307 aa16.77■□□□□ 0.28
TPM3-206ENST00000330188 SHISA4Q96DD7 197 aa16.77■□□□□ 0.28
TPM3-206ENST00000330188 KCNH3Q9ULD8 1083 aa16.77■□□□□ 0.28
TPM3-206ENST00000330188 TNRC6CQ9HCJ0 1690 aaKnown RBP16.77■□□□□ 0.27
TPM3-206ENST00000330188 SMTNL1A8MU46 457 aa16.76■□□□□ 0.27
TPM3-206ENST00000330188 PRDM1O75626 825 aa16.76■□□□□ 0.27
TPM3-206ENST00000330188 FUT2Q10981 343 aa16.76■□□□□ 0.27
TPM3-206ENST00000330188 LONRF3Q496Y0 759 aa16.76■□□□□ 0.27
TPM3-206ENST00000330188 IFIT1BQ5T764 474 aaKnown RBP16.76■□□□□ 0.27
TPM3-206ENST00000330188 ISM2Q6H9L7 571 aa16.76■□□□□ 0.27
TPM3-206ENST00000330188 KRBA2Q6ZNG9 492 aa16.76■□□□□ 0.27
TPM3-206ENST00000330188 METTL16Q86W50 562 aaKnown RBP16.76■□□□□ 0.27
TPM3-206ENST00000330188 OXER1Q8TDS5 423 aa16.76■□□□□ 0.27
TPM3-206ENST00000330188 FAM13BQ9NYF5 915 aa16.76■□□□□ 0.27
TPM3-206ENST00000330188 FBXO2Q9UK22 296 aaPredicted RBP16.76■□□□□ 0.27
TPM3-206ENST00000330188 KIAA1551Q9HCM1 1747 aa16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms